Wall clock time and date at job start Tue Mar 31 2020 13:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21563 * 120.00283 * 359.72077 * 14 13 3 16 16 C 1.47730 * 119.99572 * 179.72382 * 14 13 3 17 17 C 1.39666 * 120.11728 * 359.72588 * 16 14 13 18 18 C 1.37821 * 119.87289 * 179.67598 * 17 16 14 19 19 C 1.38672 * 120.12026 * 0.61686 * 18 17 16 20 20 F 1.35102 * 119.87721 * 179.69636 * 19 18 17 21 21 C 1.38629 * 120.23953 * 359.67950 * 19 18 17 22 22 C 1.50703 * 119.94118 * 180.02562 * 21 19 18 23 23 F 1.39899 * 109.47364 * 179.97438 * 22 21 19 24 24 F 1.39902 * 109.47199 * 299.97671 * 22 21 19 25 25 F 1.39896 * 109.47122 * 59.97861 * 22 21 19 26 26 C 1.37854 * 120.12153 * 359.97438 * 21 19 18 27 27 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 29 29 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 30 30 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 31 31 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 32 32 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 34 34 H 1.07994 * 120.06343 * 359.97438 * 17 16 14 35 35 H 1.08007 * 119.93690 * 180.29676 * 18 17 16 36 36 H 1.07997 * 120.06324 * 180.02562 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4300 16 6 0.0487 3.3352 -2.6251 17 6 0.9409 3.3785 -3.6988 18 6 0.5707 3.9952 -4.8744 19 6 -0.6801 4.5830 -4.9881 20 9 -1.0355 5.1916 -6.1407 21 6 -1.5672 4.5482 -3.9233 22 6 -2.9250 5.1887 -4.0543 23 9 -3.6350 5.0254 -2.8600 24 9 -2.7730 6.5532 -4.3236 25 9 -3.6277 4.5823 -5.1010 26 6 -1.2099 3.9279 -2.7452 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8293 -0.0619 2.9495 33 1 2.2719 2.1232 -1.9977 34 1 1.9171 2.9255 -3.6096 35 1 1.2581 4.0251 -5.7070 36 1 -1.9019 3.9010 -1.9165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177530.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:52 Heat of formation + Delta-G solvation = -227.319784 kcal Electronic energy + Delta-G solvation = -26771.299587 eV Core-core repulsion = 22140.227828 eV Total energy + Delta-G solvation = -4631.071759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.38479 -50.29516 -48.81966 -48.79187 -41.35466 -39.52998 -36.94568 -34.52216 -33.57116 -32.77724 -31.78293 -28.96706 -27.24835 -25.57059 -24.50030 -23.71866 -22.16590 -21.25051 -20.15465 -19.68373 -19.62507 -18.88948 -18.34441 -17.82405 -17.36940 -16.99031 -16.81971 -16.28156 -16.18505 -15.77240 -15.65021 -15.38930 -15.21831 -15.12455 -14.94496 -14.87896 -14.65282 -14.41899 -14.23199 -14.11794 -13.65866 -13.46673 -13.28654 -13.14112 -12.86150 -12.67137 -12.40620 -12.14598 -12.04285 -11.56243 -11.03910 -10.88716 -10.65393 -10.50717 -10.14084 -9.65022 -8.13569 -6.30730 -0.67799 -0.27672 1.39462 1.48272 1.49204 1.58110 1.59325 2.27635 2.43868 2.50801 2.52949 2.66008 2.89338 3.16952 3.19840 3.46689 3.69589 3.82438 3.91415 4.28903 4.52100 4.55973 4.59446 4.60448 4.75695 4.82967 4.96472 5.09211 5.28801 5.37484 5.45094 5.55213 5.62177 5.81362 5.92524 6.18701 6.76591 6.90826 7.34085 7.50520 8.91715 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.023438 B = 0.003163 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.365342 B = 8851.152557 C = 9489.330477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.277 3.723 4 H 0.002 0.998 5 C -0.547 4.547 6 H 0.077 0.923 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.257 1.257 13 N -0.692 5.692 14 C 0.542 3.458 15 O -0.579 6.579 16 C -0.147 4.147 17 C -0.013 4.013 18 C -0.138 4.138 19 C 0.165 3.835 20 F -0.122 7.122 21 C -0.237 4.237 22 C 0.516 3.484 23 F -0.174 7.174 24 F -0.174 7.174 25 F -0.174 7.174 26 C 0.003 3.997 27 H 0.044 0.956 28 H 0.025 0.975 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.264 0.736 33 H 0.406 0.594 34 H 0.176 0.824 35 H 0.194 0.806 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.610 7.346 -17.423 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.019 0.981 5 C -0.585 4.585 6 H 0.095 0.905 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.181 1.181 13 N -0.342 5.342 14 C 0.329 3.671 15 O -0.461 6.461 16 C -0.150 4.150 17 C -0.032 4.032 18 C -0.156 4.156 19 C 0.145 3.855 20 F -0.100 7.100 21 C -0.239 4.239 22 C 0.462 3.538 23 F -0.155 7.155 24 F -0.155 7.155 25 F -0.155 7.155 26 C -0.017 4.017 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.243 0.757 34 H 0.193 0.807 35 H 0.212 0.788 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.164 7.249 -16.627 19.158 hybrid contribution 0.459 0.160 0.284 0.563 sum -5.705 7.409 -16.343 18.829 Atomic orbital electron populations 1.21699 0.97137 0.99192 1.00277 1.21794 0.93595 0.99098 1.01558 1.18438 0.93827 0.89220 0.81090 0.98051 1.21579 0.91234 1.38885 1.06791 0.90499 1.25735 1.03072 0.94428 0.95114 1.70046 1.37040 1.38342 1.09889 0.85406 0.79388 0.77197 0.78711 1.20687 1.21375 1.18103 1.46149 1.15024 1.55057 1.17924 1.18436 0.82431 0.78868 0.87347 1.90766 1.52383 1.61413 1.41521 1.20021 0.95912 1.03658 0.95401 1.21790 0.99492 0.92175 0.89736 1.21462 0.94489 0.98949 1.00700 1.17669 0.93915 0.93319 0.80576 1.91591 1.92097 1.80075 1.46213 1.19921 0.95147 1.11049 0.97820 1.17985 0.85412 0.76544 0.73910 1.93201 1.80473 1.95274 1.46589 1.93231 1.95801 1.32816 1.93685 1.93229 1.80873 1.83077 1.58309 1.20901 0.95670 0.89764 0.95319 0.93662 0.95536 0.93715 0.93646 0.90991 0.92681 0.75742 0.80651 0.78844 0.83473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.52 71.98 0.61 -4.79 16 2 C -0.12 -5.64 5.45 30.59 0.17 -5.48 16 3 C 0.28 13.25 2.24 44.25 0.10 13.35 16 4 H 0.00 0.09 7.57 -2.39 -0.02 0.07 16 5 C -0.55 -26.90 8.73 25.60 0.22 -26.68 16 6 H 0.08 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.91 -50.41 11.29 21.45 0.24 -50.17 16 9 Si 0.97 39.97 29.54 68.60 2.03 41.99 16 10 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 13 N -0.69 -25.40 4.97 -449.09 -2.23 -27.63 16 14 C 0.54 19.57 6.35 86.75 0.55 20.12 16 15 O -0.58 -25.89 13.49 -3.91 -0.05 -25.94 16 16 C -0.15 -3.82 5.87 -20.09 -0.12 -3.94 16 17 C -0.01 -0.23 9.54 22.52 0.21 -0.02 16 18 C -0.14 -1.90 10.01 22.27 0.22 -1.68 16 19 C 0.17 3.10 7.14 22.47 0.16 3.26 16 20 F -0.12 -2.33 16.44 44.97 0.74 -1.59 16 21 C -0.24 -5.34 5.37 -19.86 -0.11 -5.45 16 22 C 0.52 11.98 3.02 71.24 0.22 12.20 16 23 F -0.17 -4.30 15.96 44.97 0.72 -3.58 16 24 F -0.17 -4.06 17.05 44.97 0.77 -3.30 16 25 F -0.17 -4.03 17.05 44.97 0.77 -3.26 16 26 C 0.00 0.07 8.97 22.52 0.20 0.27 16 27 H 0.04 1.71 8.14 -2.38 -0.02 1.70 16 28 H 0.03 1.23 7.85 -2.39 -0.02 1.21 16 29 H 0.04 1.83 5.66 -2.39 -0.01 1.82 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 3.80 5.95 -2.39 -0.01 3.78 16 32 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 33 H 0.41 11.64 6.57 -92.71 -0.61 11.03 16 34 H 0.18 2.11 6.40 -2.91 -0.02 2.09 16 35 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.15 4.16 6.74 -2.91 -0.02 4.14 16 Total: -1.00 -63.21 320.73 6.42 -56.79 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.55 Total: 14.20 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 2.89 Total: 2.48 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -1.99 Total: -77.79 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -0.05 Total: -25.94 kcal Atomic # 9 Polarization: -14.72 SS G_CDS: 2.99 Total: -11.73 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 41.99 kcal Total: -63.21 6.42 -56.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177530.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.531 kcal (2) G-P(sol) polarization free energy of solvation -63.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds