Wall clock time and date at job start Tue Mar 31 2020 12:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99763 * 2 1 4 4 H 1.48498 * 109.46637 * 239.99844 * 3 2 1 5 5 H 1.48498 * 109.47245 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47130 * 120.00247 * 3 2 1 7 7 C 1.37876 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99889 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99936 * 89.99796 * 10 9 7 12 12 C 1.53000 * 109.46992 * 90.00137 * 11 10 9 13 13 F 1.39907 * 109.47186 * 59.99884 * 12 11 10 14 14 F 1.39895 * 109.47130 * 179.97438 * 12 11 10 15 15 F 1.39901 * 109.47123 * 299.99918 * 12 11 10 16 16 C 1.34773 * 120.00036 * 270.27831 * 10 9 7 17 17 O 1.21283 * 120.00092 * 359.71995 * 16 10 9 18 18 C 1.50702 * 120.00430 * 179.72648 * 16 10 9 19 19 C 1.50698 * 109.47465 * 179.97438 * 18 16 10 20 20 C 1.38269 * 119.98313 * 269.72731 * 19 18 16 21 21 C 1.38229 * 120.04719 * 179.72883 * 20 19 18 22 22 C 1.38221 * 120.02328 * 0.54025 * 21 20 19 23 23 C 1.38438 * 119.97885 * 359.73110 * 22 21 20 24 24 F 1.35099 * 120.02905 * 180.02562 * 23 22 21 25 25 C 1.38171 * 119.98845 * 89.99646 * 19 18 16 26 26 H 0.96995 * 119.99689 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47398 * 60.00031 * 9 7 2 28 28 H 1.09005 * 109.46700 * 299.99953 * 9 7 2 29 29 H 1.09000 * 109.46803 * 209.99571 * 11 10 9 30 30 H 1.09000 * 109.47214 * 330.00364 * 11 10 9 31 31 H 1.09009 * 109.46564 * 299.99895 * 18 16 10 32 32 H 1.09001 * 109.47030 * 59.99569 * 18 16 10 33 33 H 1.07996 * 119.97505 * 359.97385 * 20 19 18 34 34 H 1.07994 * 119.98616 * 180.27312 * 21 20 19 35 35 H 1.08004 * 120.00779 * 179.75344 * 22 21 20 36 36 H 1.08007 * 120.01401 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6792 -4.1694 1.2683 12 6 1.7485 -5.3006 1.7099 13 9 1.7385 -6.3039 0.7349 14 9 2.2034 -5.8326 2.9212 15 9 0.4528 -4.8000 1.8772 16 6 2.6453 -4.1212 -1.1677 17 8 2.2512 -3.6603 -2.2180 18 6 3.6294 -5.2625 -1.1678 19 6 3.9596 -5.6411 -2.5886 20 6 3.2074 -6.6008 -3.2405 21 6 3.5056 -6.9450 -4.5456 22 6 4.5632 -6.3381 -5.1966 23 6 5.3204 -5.3812 -4.5429 24 9 6.3540 -4.7870 -5.1783 25 6 5.0172 -5.0331 -3.2373 26 1 -0.4849 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5570 0.8897 29 1 3.6886 -4.5594 1.1378 30 1 2.6869 -3.3877 2.0279 31 1 4.5398 -4.9573 -0.6517 32 1 3.1916 -6.1197 -0.6561 33 1 2.3839 -7.0789 -2.7311 34 1 2.9147 -7.6916 -5.0554 35 1 4.7984 -6.6102 -6.2150 36 1 5.6070 -4.2863 -2.7264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080858163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:11 Heat of formation + Delta-G solvation = -210.945710 kcal Electronic energy + Delta-G solvation = -27147.992254 eV Core-core repulsion = 22517.630528 eV Total energy + Delta-G solvation = -4630.361725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.92318 -48.83664 -47.49896 -47.34303 -39.79536 -38.46667 -35.37490 -33.08877 -32.52577 -30.52010 -29.40246 -28.34948 -26.44031 -23.36348 -23.21567 -22.69500 -21.58641 -19.15396 -18.37237 -18.24913 -17.58729 -17.22726 -16.63254 -16.33551 -16.15966 -16.00920 -15.52870 -15.41622 -14.62037 -14.39068 -14.28723 -14.21851 -13.89419 -13.83743 -13.62435 -13.52200 -13.28208 -13.10710 -13.00562 -12.54816 -12.32366 -12.06047 -11.96984 -11.83879 -11.43843 -11.32658 -11.03319 -11.00745 -10.66045 -10.26812 -9.83306 -9.32829 -8.87648 -8.60377 -8.51679 -8.08871 -6.13326 -4.19466 1.17922 1.24628 2.76683 3.19268 3.26947 3.32300 3.34022 3.38672 3.66197 4.05523 4.17006 4.24710 4.36927 4.45534 4.61296 4.76069 4.92623 5.00635 5.12765 5.21512 5.23430 5.31018 5.40616 5.49053 5.55974 5.84536 6.06902 6.11992 6.29611 6.50892 6.78218 6.92554 7.21786 7.31948 7.80703 8.01100 8.09236 8.68974 8.85701 9.46068 10.94988 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.005133 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.286054 B = 5453.706672 C = 7617.686527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.243 3.757 10 N -0.597 5.597 11 C 0.073 3.927 12 C 0.428 3.572 13 F -0.187 7.187 14 F -0.187 7.187 15 F -0.173 7.173 16 C 0.514 3.486 17 O -0.511 6.511 18 C -0.122 4.122 19 C -0.027 4.027 20 C -0.115 4.115 21 C -0.091 4.091 22 C -0.159 4.159 23 C 0.097 3.903 24 F -0.143 7.143 25 C -0.138 4.138 26 H 0.266 0.734 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.192 -15.159 -0.114 17.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.077 0.923 9 C 0.125 3.875 10 N -0.329 5.329 11 C -0.055 4.055 12 C 0.372 3.628 13 F -0.169 7.169 14 F -0.169 7.169 15 F -0.155 7.155 16 C 0.301 3.699 17 O -0.385 6.385 18 C -0.162 4.162 19 C -0.027 4.027 20 C -0.133 4.133 21 C -0.109 4.109 22 C -0.178 4.178 23 C 0.078 3.922 24 F -0.122 7.122 25 C -0.157 4.157 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.130 0.870 30 H 0.149 0.851 31 H 0.120 0.880 32 H 0.130 0.870 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.798 -14.743 -0.733 16.695 hybrid contribution 0.435 0.925 0.094 1.027 sum 8.232 -13.818 -0.639 16.097 Atomic orbital electron populations 1.69920 1.06019 1.27361 1.49590 1.24924 0.94878 0.99260 0.94797 0.86543 0.79531 0.82611 0.78662 1.20144 1.21098 1.20162 1.21332 0.93313 0.90465 1.52211 0.92323 1.19502 0.87130 0.81555 0.99318 1.48223 1.46633 1.35606 1.02470 1.22636 0.96137 0.94906 0.91859 1.21737 0.82155 0.84237 0.74647 1.93081 1.96503 1.64284 1.63016 1.93161 1.88897 1.87968 1.46862 1.93229 1.40054 1.86990 1.95198 1.20220 0.82175 0.83447 0.84056 1.90733 1.57070 1.60369 1.30295 1.21080 1.00572 0.99565 0.95013 1.19131 0.93877 0.94794 0.94937 1.21081 0.99320 0.97901 0.95028 1.20927 0.96216 0.99284 0.94432 1.21083 0.97444 0.98314 1.00941 1.17622 0.87543 0.95540 0.91499 1.91484 1.56186 1.82592 1.81893 1.20987 0.99651 1.01384 0.93710 0.92476 0.93307 0.94119 0.87000 0.85146 0.88012 0.87021 0.85404 0.85088 0.85048 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.34 9.38 -34.44 -0.32 -14.67 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.24 5.98 4.95 -5.19 -0.03 5.96 16 10 N -0.60 -11.45 2.37 -175.05 -0.42 -11.87 16 11 C 0.07 1.01 5.33 -4.04 -0.02 0.99 16 12 C 0.43 5.94 3.29 37.16 0.12 6.06 16 13 F -0.19 -2.55 14.33 2.25 0.03 -2.51 16 14 F -0.19 -2.34 17.32 2.25 0.04 -2.30 16 15 F -0.17 -2.91 16.23 2.25 0.04 -2.87 16 16 C 0.51 9.80 7.34 -10.99 -0.08 9.72 16 17 O -0.51 -12.16 15.62 5.55 0.09 -12.07 16 18 C -0.12 -1.65 4.31 -29.03 -0.13 -1.78 16 19 C -0.03 -0.38 4.37 -104.64 -0.46 -0.83 16 20 C -0.12 -1.47 9.70 -39.57 -0.38 -1.86 16 21 C -0.09 -1.03 10.04 -39.59 -0.40 -1.43 16 22 C -0.16 -1.91 10.03 -39.51 -0.40 -2.31 16 23 C 0.10 1.35 7.30 -39.42 -0.29 1.06 16 24 F -0.14 -2.04 17.27 2.25 0.04 -2.01 16 25 C -0.14 -1.98 9.68 -39.52 -0.38 -2.36 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.05 1.38 7.43 -51.93 -0.39 1.00 16 28 H 0.04 1.02 7.25 -51.93 -0.38 0.64 16 29 H 0.11 1.12 6.43 -51.93 -0.33 0.78 16 30 H 0.13 1.76 8.07 -51.93 -0.42 1.34 16 31 H 0.10 1.09 7.35 -51.92 -0.38 0.71 16 32 H 0.11 1.30 5.46 -51.93 -0.28 1.01 16 33 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 36 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -32.33 328.81 -5.78 -38.12 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -3.42 Total: -0.84 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -2.86 Total: 0.24 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.32 Total: -36.89 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 9 Polarization: -9.84 SS G_CDS: 0.15 Total: -9.69 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.33 -5.78 -38.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080858163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.830 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds