Wall clock time and date at job start Tue Mar 31 2020 12:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99763 * 2 1 4 4 H 1.48498 * 109.46637 * 239.99844 * 3 2 1 5 5 H 1.48498 * 109.47245 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47130 * 120.00247 * 3 2 1 7 7 C 1.37876 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99889 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47126 * 180.02562 * 9 7 2 11 11 C 1.46506 * 119.99936 * 89.99796 * 10 9 7 12 12 C 1.53000 * 109.46992 * 90.00137 * 11 10 9 13 13 F 1.39907 * 109.47186 * 59.99884 * 12 11 10 14 14 F 1.39895 * 109.47130 * 179.97438 * 12 11 10 15 15 F 1.39901 * 109.47123 * 299.99918 * 12 11 10 16 16 C 1.34773 * 120.00036 * 270.27831 * 10 9 7 17 17 O 1.21283 * 120.00092 * 359.71995 * 16 10 9 18 18 C 1.50702 * 120.00430 * 179.72648 * 16 10 9 19 19 C 1.50698 * 109.47465 * 179.97438 * 18 16 10 20 20 C 1.38269 * 119.98313 * 269.72731 * 19 18 16 21 21 C 1.38229 * 120.04719 * 179.72883 * 20 19 18 22 22 C 1.38221 * 120.02328 * 0.54025 * 21 20 19 23 23 C 1.38438 * 119.97885 * 359.73110 * 22 21 20 24 24 F 1.35099 * 120.02905 * 180.02562 * 23 22 21 25 25 C 1.38171 * 119.98845 * 89.99646 * 19 18 16 26 26 H 0.96995 * 119.99689 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47398 * 60.00031 * 9 7 2 28 28 H 1.09005 * 109.46700 * 299.99953 * 9 7 2 29 29 H 1.09000 * 109.46803 * 209.99571 * 11 10 9 30 30 H 1.09000 * 109.47214 * 330.00364 * 11 10 9 31 31 H 1.09009 * 109.46564 * 299.99895 * 18 16 10 32 32 H 1.09001 * 109.47030 * 59.99569 * 18 16 10 33 33 H 1.07996 * 119.97505 * 359.97385 * 20 19 18 34 34 H 1.07994 * 119.98616 * 180.27312 * 21 20 19 35 35 H 1.08004 * 120.00779 * 179.75344 * 22 21 20 36 36 H 1.08007 * 120.01401 * 359.97438 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6792 -4.1694 1.2683 12 6 1.7485 -5.3006 1.7099 13 9 1.7385 -6.3039 0.7349 14 9 2.2034 -5.8326 2.9212 15 9 0.4528 -4.8000 1.8772 16 6 2.6453 -4.1212 -1.1677 17 8 2.2512 -3.6603 -2.2180 18 6 3.6294 -5.2625 -1.1678 19 6 3.9596 -5.6411 -2.5886 20 6 3.2074 -6.6008 -3.2405 21 6 3.5056 -6.9450 -4.5456 22 6 4.5632 -6.3381 -5.1966 23 6 5.3204 -5.3812 -4.5429 24 9 6.3540 -4.7870 -5.1783 25 6 5.0172 -5.0331 -3.2373 26 1 -0.4849 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8902 28 1 0.6248 -2.5570 0.8897 29 1 3.6886 -4.5594 1.1378 30 1 2.6869 -3.3877 2.0279 31 1 4.5398 -4.9573 -0.6517 32 1 3.1916 -6.1197 -0.6561 33 1 2.3839 -7.0789 -2.7311 34 1 2.9147 -7.6916 -5.0554 35 1 4.7984 -6.6102 -6.2150 36 1 5.6070 -4.2863 -2.7264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080858163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:10 Heat of formation + Delta-G solvation = -229.343810 kcal Electronic energy + Delta-G solvation = -27148.790055 eV Core-core repulsion = 22517.630528 eV Total energy + Delta-G solvation = -4631.159527 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.05971 -49.89599 -48.59403 -48.53646 -41.12575 -39.63219 -36.95031 -34.91587 -33.80837 -31.50466 -30.93022 -29.63596 -28.02211 -24.99274 -24.54979 -23.69178 -22.76295 -20.51721 -19.52299 -19.43256 -19.03154 -18.34004 -18.30568 -17.64511 -17.30770 -17.10913 -17.00742 -16.57143 -16.18665 -15.87823 -15.46959 -15.42935 -14.97563 -14.91924 -14.81380 -14.69170 -14.55265 -14.45153 -14.17083 -14.13109 -13.64449 -13.39237 -13.17186 -13.09780 -12.91713 -12.81769 -12.56581 -12.48204 -12.21052 -11.98157 -11.78100 -10.85072 -10.63491 -9.90561 -9.76565 -9.62208 -8.22933 -6.36967 0.17892 0.26536 1.38756 1.42446 1.48622 1.49771 1.85578 2.05195 2.39672 2.62670 2.90488 3.06103 3.08985 3.24474 3.29265 3.58738 3.75937 3.82364 4.05384 4.10823 4.26151 4.31630 4.40417 4.46150 4.58604 4.86682 4.99683 5.10729 5.15899 5.21459 5.35304 5.42042 5.52045 5.73989 5.95671 6.02382 6.46129 6.72213 7.20999 7.36358 8.84968 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.009655 B = 0.005133 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.286054 B = 5453.706672 C = 7617.686527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.965 3.035 4 H -0.280 1.280 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.260 3.740 10 N -0.603 5.603 11 C 0.068 3.932 12 C 0.435 3.565 13 F -0.184 7.184 14 F -0.174 7.174 15 F -0.195 7.195 16 C 0.509 3.491 17 O -0.569 6.569 18 C -0.108 4.108 19 C -0.046 4.046 20 C -0.124 4.124 21 C -0.088 4.088 22 C -0.157 4.157 23 C 0.075 3.925 24 F -0.150 7.150 25 C -0.154 4.154 26 H 0.267 0.733 27 H 0.000 1.000 28 H 0.031 0.969 29 H 0.161 0.839 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.164 0.836 35 H 0.155 0.845 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.905 -16.389 0.446 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.140 3.860 10 N -0.334 5.334 11 C -0.058 4.058 12 C 0.379 3.621 13 F -0.165 7.165 14 F -0.155 7.155 15 F -0.177 7.177 16 C 0.298 3.702 17 O -0.447 6.447 18 C -0.147 4.147 19 C -0.047 4.047 20 C -0.143 4.143 21 C -0.106 4.106 22 C -0.176 4.176 23 C 0.056 3.944 24 F -0.129 7.129 25 C -0.173 4.173 26 H 0.075 0.925 27 H 0.018 0.982 28 H 0.049 0.951 29 H 0.179 0.821 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.159 0.841 34 H 0.182 0.818 35 H 0.173 0.827 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.543 -16.014 -0.127 18.642 hybrid contribution -0.122 1.220 -0.101 1.230 sum 9.421 -14.794 -0.228 17.541 Atomic orbital electron populations 1.70050 1.07634 1.28221 1.50811 1.25822 0.95680 1.02981 0.94468 0.85509 0.78289 0.78250 0.79018 1.20539 1.20814 1.18121 1.21677 0.93580 0.91522 1.51421 0.91986 1.18881 0.87580 0.83157 0.96400 1.48070 1.45846 1.34574 1.04904 1.23005 0.98163 0.95146 0.89467 1.21588 0.81126 0.84292 0.75100 1.93086 1.96411 1.64072 1.62949 1.93191 1.88583 1.87724 1.46041 1.93196 1.41746 1.87368 1.95351 1.21218 0.82066 0.83989 0.82886 1.90701 1.59200 1.62466 1.32351 1.21072 1.00177 0.97670 0.95732 1.19279 0.94348 0.95641 0.95431 1.21406 0.99337 0.97688 0.95823 1.21329 0.95911 0.99336 0.93974 1.21430 0.96919 0.97276 1.01963 1.17905 0.88105 0.96592 0.91836 1.91459 1.56594 1.82883 1.81981 1.21131 1.00213 1.01756 0.94211 0.92451 0.98193 0.95111 0.82127 0.84650 0.84637 0.84717 0.84129 0.81836 0.82698 0.84754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.54 -29.54 9.38 25.60 0.24 -29.30 16 8 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 9 C 0.26 13.23 4.95 85.63 0.42 13.66 16 10 N -0.60 -22.90 2.37 -826.14 -1.96 -24.86 16 11 C 0.07 1.74 5.33 86.38 0.46 2.20 16 12 C 0.43 11.21 3.29 71.98 0.24 11.45 16 13 F -0.18 -4.56 14.33 44.97 0.64 -3.91 16 14 F -0.17 -3.86 17.32 44.97 0.78 -3.09 16 15 F -0.19 -6.50 16.23 44.97 0.73 -5.77 16 16 C 0.51 19.16 7.34 87.66 0.64 19.81 16 17 O -0.57 -27.84 15.62 -3.04 -0.05 -27.89 16 18 C -0.11 -2.65 4.31 29.10 0.13 -2.52 16 19 C -0.05 -1.24 4.37 -19.87 -0.09 -1.33 16 20 C -0.12 -2.95 9.70 22.27 0.22 -2.74 16 21 C -0.09 -1.79 10.04 22.26 0.22 -1.56 16 22 C -0.16 -3.49 10.03 22.31 0.22 -3.26 16 23 C 0.07 2.02 7.30 22.38 0.16 2.18 16 24 F -0.15 -4.25 17.27 44.97 0.78 -3.47 16 25 C -0.15 -4.29 9.68 22.31 0.22 -4.07 16 26 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 27 H 0.00 0.00 7.43 -2.39 -0.02 -0.02 16 28 H 0.03 1.61 7.25 -2.38 -0.02 1.59 16 29 H 0.16 2.51 6.43 -2.39 -0.02 2.50 16 30 H 0.14 3.39 8.07 -2.39 -0.02 3.37 16 31 H 0.14 2.39 7.35 -2.38 -0.02 2.38 16 32 H 0.14 2.68 5.46 -2.39 -0.01 2.67 16 33 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.13 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -73.42 328.81 7.92 -65.51 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: 1.13 Total: 7.10 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 3.55 Total: 5.52 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.67 Total: -79.59 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.05 Total: -27.89 kcal Atomic # 9 Polarization: -19.17 SS G_CDS: 2.93 Total: -16.24 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -73.42 7.92 -65.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080858163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.835 kcal (2) G-P(sol) polarization free energy of solvation -73.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds