Wall clock time and date at job start Tue Mar 31 2020 13:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47419 * 2 1 4 4 H 1.08999 * 109.46996 * 54.99832 * 3 2 1 5 5 C 1.50696 * 109.47180 * 174.99336 * 3 2 1 6 6 H 1.08007 * 119.99990 * 120.00049 * 5 3 2 7 7 C 1.37880 * 120.00580 * 300.00472 * 5 3 2 8 8 N 1.31516 * 119.99488 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00421 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46931 * 90.00099 * 9 7 5 11 11 H 1.48500 * 109.47257 * 209.99628 * 9 7 5 12 12 H 1.48494 * 109.47052 * 330.00231 * 9 7 5 13 13 N 1.46490 * 109.47494 * 294.99853 * 3 2 1 14 14 C 1.34773 * 120.00134 * 84.99437 * 13 3 2 15 15 O 1.21567 * 120.00370 * 0.02562 * 14 13 3 16 16 C 1.47696 * 120.00221 * 180.02562 * 14 13 3 17 17 C 1.39659 * 120.16483 * 0.26130 * 16 14 13 18 18 C 1.37862 * 119.87840 * 180.27413 * 17 16 14 19 19 C 1.38459 * 120.21698 * 359.74294 * 18 17 16 20 20 C 1.38205 * 120.33697 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.93962 * 180.02562 * 20 19 18 22 22 F 1.39908 * 109.46970 * 359.97403 * 21 20 19 23 23 F 1.39896 * 109.47577 * 119.97708 * 21 20 19 24 24 F 1.39899 * 109.46866 * 239.98032 * 21 20 19 25 25 C 1.38312 * 120.12113 * 359.97438 * 20 19 18 26 26 F 1.35104 * 120.11223 * 180.02562 * 25 20 19 27 27 H 1.09005 * 109.46518 * 60.00121 * 1 2 3 28 28 H 1.08996 * 109.47610 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47378 * 300.00531 * 1 2 3 30 30 H 1.08999 * 109.47378 * 239.99469 * 2 1 3 31 31 H 1.09005 * 109.46518 * 119.99879 * 2 1 3 32 32 H 0.97003 * 119.99795 * 180.02562 * 8 7 5 33 33 H 0.97005 * 120.00310 * 265.00417 * 13 3 2 34 34 H 1.07998 * 120.06282 * 359.97438 * 17 16 14 35 35 H 1.07994 * 119.88918 * 179.77131 * 18 17 16 36 36 H 1.07995 * 119.82884 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1240 6 1 4.1473 1.8887 -0.6521 7 6 4.1433 0.8782 1.2281 8 7 3.4061 0.3373 2.1734 9 14 6.0050 0.8798 1.3814 10 1 6.4427 2.1127 2.0841 11 1 6.4390 -0.3113 2.1549 12 1 6.6131 0.8393 0.0274 13 7 1.6526 2.0975 -1.2517 14 6 0.4354 2.6644 -1.3669 15 8 -0.3410 2.6326 -0.4320 16 6 0.0445 3.3243 -2.6291 17 6 0.9316 3.3581 -3.7073 18 6 0.5628 3.9806 -4.8808 19 6 -0.6860 4.5676 -4.9956 20 6 -1.5726 4.5352 -3.9360 21 6 -2.9297 5.1765 -4.0709 22 9 -3.0570 5.7344 -5.3476 23 9 -3.9232 4.2096 -3.8833 24 9 -3.0687 6.1810 -3.1072 25 6 -1.2171 3.9145 -2.7522 26 9 -2.0842 3.8825 -1.7166 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 3.8291 -0.0606 2.9504 33 1 2.2721 2.1231 -1.9977 34 1 1.9065 2.9017 -3.6203 35 1 1.2500 4.0101 -5.7134 36 1 -0.9682 5.0540 -5.9176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094599344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:09 Heat of formation + Delta-G solvation = -208.389319 kcal Electronic energy + Delta-G solvation = -27126.257276 eV Core-core repulsion = 22496.006404 eV Total energy + Delta-G solvation = -4630.250872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.40271 -49.03330 -47.86673 -47.78690 -39.95198 -38.39939 -35.16729 -33.04451 -32.12890 -31.25099 -30.55696 -27.14572 -26.28861 -24.32701 -22.93645 -22.44442 -20.74730 -19.55020 -18.95333 -18.69085 -18.63836 -17.46012 -17.18140 -16.47493 -15.88668 -15.78441 -15.27869 -15.08483 -14.66317 -14.63117 -14.49379 -14.42570 -14.24648 -13.96356 -13.95742 -13.64449 -13.33495 -12.92362 -12.74246 -12.72151 -12.32044 -12.05398 -11.68665 -11.56671 -11.30945 -11.03174 -10.89979 -10.38184 -10.25710 -9.72709 -9.63338 -9.27609 -9.12789 -9.10154 -8.56597 -7.95864 -6.18387 -4.28685 0.35622 0.60333 2.35215 2.72970 3.20575 3.27306 3.28616 3.38187 3.51471 3.75432 3.88462 3.90407 4.17314 4.29249 4.47843 4.52167 4.70838 4.95074 5.13269 5.25434 5.49853 5.59279 5.72169 5.85846 6.28109 6.35013 6.40956 6.60703 6.98076 7.13457 7.25844 7.33081 7.53862 7.63405 7.81674 8.10387 8.48823 8.67344 8.94005 9.38478 10.86937 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.025263 B = 0.003335 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.068162 B = 8394.667659 C = 8947.287448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.696 5.696 14 C 0.540 3.460 15 O -0.526 6.526 16 C -0.160 4.160 17 C -0.029 4.029 18 C -0.139 4.139 19 C -0.031 4.031 20 C -0.238 4.238 21 C 0.516 3.484 22 F -0.175 7.175 23 F -0.171 7.171 24 F -0.171 7.171 25 C 0.204 3.796 26 F -0.098 7.098 27 H 0.036 0.964 28 H 0.024 0.976 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.101 0.899 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.149 0.851 35 H 0.147 0.853 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.795 7.609 -16.675 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.345 5.345 14 C 0.324 3.676 15 O -0.404 6.404 16 C -0.164 4.164 17 C -0.048 4.048 18 C -0.157 4.157 19 C -0.049 4.049 20 C -0.240 4.240 21 C 0.462 3.538 22 F -0.156 7.156 23 F -0.153 7.153 24 F -0.152 7.152 25 C 0.183 3.817 26 F -0.076 7.076 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.386 7.469 -15.718 18.905 hybrid contribution 0.897 0.083 -0.122 0.910 sum -6.489 7.552 -15.840 18.709 Atomic orbital electron populations 1.21851 0.98277 0.98226 1.01249 1.21944 0.92639 0.99584 1.02448 1.18878 0.94419 0.89272 0.80531 0.92987 1.21188 0.90459 1.39417 1.06498 0.92030 1.24883 0.98686 0.94681 0.95331 1.69892 1.35226 1.37337 1.09268 0.86440 0.84684 0.77712 0.78216 1.20533 1.21035 1.19834 1.46441 1.13857 1.55329 1.18837 1.17765 0.83672 0.80048 0.86141 1.90840 1.51105 1.59206 1.39230 1.20556 0.93787 1.04105 0.97998 1.21614 0.98804 0.93388 0.90991 1.21157 0.96424 0.99500 0.98659 1.21047 0.92282 0.94725 0.96859 1.20022 0.96318 1.10366 0.97339 1.17955 0.85347 0.76678 0.73866 1.93163 1.96435 1.86053 1.39984 1.93250 1.64090 1.63049 1.94863 1.93252 1.96376 1.61916 1.63690 1.17276 0.87311 0.93934 0.83205 1.91673 1.67103 1.93220 1.55571 0.94457 0.95676 0.93010 0.94920 0.88098 0.92450 0.77922 0.83351 0.83519 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.00 5.45 -26.73 -0.15 -3.15 16 3 C 0.27 6.54 2.24 -69.09 -0.15 6.38 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -13.57 8.73 -34.44 -0.30 -13.87 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.02 11.29 55.43 0.63 -23.39 16 9 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 N -0.70 -13.62 4.97 -55.94 -0.28 -13.89 16 14 C 0.54 10.53 6.34 -12.40 -0.08 10.45 16 15 O -0.53 -12.29 12.48 5.31 0.07 -12.22 16 16 C -0.16 -2.41 5.88 -104.91 -0.62 -3.03 16 17 C -0.03 -0.31 9.54 -39.19 -0.37 -0.68 16 18 C -0.14 -1.11 10.03 -39.64 -0.40 -1.51 16 19 C -0.03 -0.27 9.42 -39.51 -0.37 -0.64 16 20 C -0.24 -2.86 5.37 -104.61 -0.56 -3.43 16 21 C 0.52 6.20 3.03 36.01 0.11 6.31 16 22 F -0.18 -1.79 15.96 2.25 0.04 -1.75 16 23 F -0.17 -2.25 17.05 2.25 0.04 -2.21 16 24 F -0.17 -2.26 17.05 2.25 0.04 -2.22 16 25 C 0.20 3.10 7.11 -38.96 -0.28 2.82 16 26 F -0.10 -1.77 14.74 2.25 0.03 -1.73 16 27 H 0.04 0.80 5.65 -51.93 -0.29 0.51 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 32 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.39 6.25 6.57 -40.82 -0.27 5.98 16 34 H 0.15 1.28 6.41 -52.49 -0.34 0.94 16 35 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 36 H 0.15 0.89 7.14 -52.49 -0.37 0.52 16 LS Contribution 318.86 15.07 4.81 4.81 Total: -1.00 -30.09 318.86 -5.79 -35.89 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -3.19 Total: 3.26 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.95 Total: -1.42 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.35 Total: -37.29 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 0.15 Total: -7.92 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.09 -5.79 -35.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094599344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.501 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds