Wall clock time and date at job start Tue Mar 31 2020 12:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00118 * 2 1 4 4 H 1.48502 * 109.47287 * 269.99954 * 3 2 1 5 5 H 1.48496 * 109.47221 * 29.99585 * 3 2 1 6 6 H 1.48499 * 109.47383 * 150.00057 * 3 2 1 7 7 C 1.37875 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00181 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00061 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47094 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00080 * 270.00148 * 10 9 7 12 12 C 1.50703 * 109.47157 * 274.41838 * 11 10 9 13 13 C 1.34516 * 125.78545 * 84.71090 * 12 11 10 14 14 C 1.41387 * 106.83825 * 180.02562 * 13 12 11 15 15 C 1.34510 * 106.83963 * 0.02562 * 14 13 12 16 16 O 1.34301 * 125.79330 * 264.40590 * 12 11 10 17 17 C 1.34772 * 119.99709 * 90.00353 * 10 9 7 18 18 O 1.21608 * 120.00213 * 4.91568 * 17 10 9 19 19 C 1.47388 * 120.00033 * 184.91868 * 17 10 9 20 20 C 1.40235 * 120.21249 * 85.33996 * 19 17 10 21 21 O 1.35655 * 120.13674 * 359.70406 * 20 19 17 22 22 C 1.38587 * 119.72531 * 179.72750 * 20 19 17 23 23 C 1.38176 * 120.15896 * 359.97438 * 22 20 19 24 24 C 1.38366 * 120.43304 * 0.02562 * 23 22 20 25 25 C 1.38171 * 120.27328 * 359.97438 * 24 23 22 26 26 F 1.35106 * 120.08445 * 179.97438 * 25 24 23 27 27 H 0.96998 * 119.99993 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46536 * 59.99960 * 9 7 2 29 29 H 1.08995 * 109.46911 * 300.00134 * 9 7 2 30 30 H 1.09002 * 109.47696 * 34.41935 * 11 10 9 31 31 H 1.09002 * 109.47323 * 154.42235 * 11 10 9 32 32 H 1.07997 * 126.58243 * 0.04071 * 13 12 11 33 33 H 1.08005 * 126.57911 * 179.97438 * 14 13 12 34 34 H 1.08004 * 125.78813 * 180.02562 * 15 14 13 35 35 H 0.96699 * 114.00285 * 95.22237 * 21 20 19 36 36 H 1.08003 * 119.91990 * 180.02562 * 22 20 19 37 37 H 1.08006 * 119.78166 * 180.02562 * 23 22 20 38 38 H 1.08004 * 119.86411 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2434 -3.2651 1.2714 12 6 5.6309 -2.9401 1.7616 13 6 5.9783 -1.8555 2.4775 14 6 7.3682 -1.9517 2.7183 15 6 7.7870 -3.0890 2.1347 16 8 6.7293 -3.6869 1.5627 17 6 4.2249 -3.2114 -1.1644 18 8 4.1089 -2.6119 -2.2161 19 6 4.6116 -4.6337 -1.1658 20 6 3.6282 -5.6324 -1.1201 21 8 2.3156 -5.2939 -1.0685 22 6 4.0029 -6.9666 -1.1276 23 6 5.3398 -7.3119 -1.1803 24 6 6.3155 -6.3319 -1.2255 25 6 5.9620 -4.9962 -1.2189 26 9 6.9179 -4.0424 -1.2627 27 1 -0.4850 0.8400 -0.0004 28 1 3.8744 -0.6800 0.8912 29 1 3.8751 -0.6805 -0.8888 30 1 3.5113 -2.9374 2.0095 31 1 4.1533 -4.3413 1.1233 32 1 5.3216 -1.0635 2.8056 33 1 7.9770 -1.2468 3.2652 34 1 8.8009 -3.4612 2.1320 35 1 1.8791 -5.2784 -1.9312 36 1 3.2482 -7.7383 -1.0929 37 1 5.6250 -8.3536 -1.1862 38 1 7.3578 -6.6121 -1.2661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123164297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:02 Heat of formation + Delta-G solvation = -63.442057 kcal Electronic energy + Delta-G solvation = -27581.715803 eV Core-core repulsion = 23499.607056 eV Total energy + Delta-G solvation = -4082.108747 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.84822 -42.31931 -40.12792 -38.38528 -36.54105 -35.34787 -32.78650 -32.64264 -31.11280 -30.28907 -29.82517 -27.98185 -25.56079 -24.08671 -22.70934 -22.09457 -21.44658 -20.51881 -19.27676 -18.52276 -17.51192 -17.10332 -16.80980 -16.66507 -16.34739 -15.97429 -15.65704 -15.28729 -15.02369 -14.60760 -14.56470 -14.11397 -13.85331 -13.52805 -13.04982 -12.70806 -12.62778 -12.52788 -12.38306 -12.31888 -12.05696 -11.69182 -11.67833 -11.48742 -10.99327 -10.86080 -10.56098 -10.21014 -9.71649 -9.59898 -9.35286 -8.88049 -8.73887 -8.59479 -8.32427 -7.91065 -6.09378 -4.08467 0.87092 1.00305 1.89149 2.79317 2.96867 3.22216 3.29483 3.35459 3.35525 3.38345 3.74493 3.94741 4.38643 4.39642 4.65499 4.77941 4.88602 4.98208 5.10200 5.17398 5.23534 5.24144 5.47033 5.51892 5.79010 5.86962 5.92086 5.99149 6.05306 6.12837 6.15259 6.28428 6.57949 6.65249 6.70898 6.90752 7.17374 7.36664 7.57560 7.64479 8.04028 8.44069 8.73829 8.96464 9.50502 11.03550 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.006152 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.786612 B = 4550.352145 C = 6058.377236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.871 3.129 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.215 3.785 10 N -0.572 5.572 11 C 0.192 3.808 12 C -0.027 4.027 13 C -0.195 4.195 14 C -0.215 4.215 15 C -0.046 4.046 16 O -0.171 6.171 17 C 0.570 3.430 18 O -0.525 6.525 19 C -0.181 4.181 20 C 0.171 3.829 21 O -0.481 6.481 22 C -0.165 4.165 23 C -0.065 4.065 24 C -0.169 4.169 25 C 0.155 3.845 26 F -0.125 7.125 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.039 0.961 30 H 0.119 0.881 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.197 0.803 35 H 0.402 0.598 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.642 -14.562 2.604 20.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.127 4.127 3 Si 0.698 3.302 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.568 4.568 8 H 0.099 0.901 9 C 0.095 3.905 10 N -0.301 5.301 11 C 0.067 3.933 12 C -0.079 4.079 13 C -0.215 4.215 14 C -0.234 4.234 15 C -0.114 4.114 16 O -0.066 6.066 17 C 0.355 3.645 18 O -0.401 6.401 19 C -0.185 4.185 20 C 0.125 3.875 21 O -0.292 6.292 22 C -0.184 4.184 23 C -0.083 4.083 24 C -0.188 4.188 25 C 0.135 3.865 26 F -0.103 7.103 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.137 0.863 31 H 0.105 0.895 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.214 0.786 35 H 0.260 0.740 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 13.507 -14.261 2.473 19.797 hybrid contribution 0.571 1.346 -0.277 1.488 sum 14.078 -12.915 2.196 19.230 Atomic orbital electron populations 1.69885 1.06111 1.26969 1.50348 1.24806 0.94725 0.98764 0.94414 0.86927 0.80303 0.84009 0.78987 1.19882 1.20985 1.18983 1.21324 0.88786 0.95129 1.51557 0.90124 1.19774 0.95861 0.76980 0.97842 1.47829 1.62876 1.16007 1.03422 1.19841 0.87149 0.98349 0.87927 1.23201 0.89086 0.93359 1.02212 1.21691 0.95943 0.99923 1.03933 1.21798 0.95598 0.99786 1.06245 1.23918 0.91659 0.95449 1.00356 1.84021 1.15835 1.45608 1.61156 1.17661 0.77362 0.84968 0.84468 1.90790 1.51583 1.66892 1.30872 1.20565 0.92878 0.96133 1.08966 1.18195 0.83853 0.90042 0.95393 1.84789 1.18178 1.91134 1.35107 1.21452 0.97152 0.95282 1.04514 1.20909 0.91695 0.99403 0.96343 1.21029 1.01317 0.90469 1.06006 1.17434 0.83957 0.85946 0.99142 1.91553 1.62213 1.63414 1.93098 0.92538 0.94859 0.94308 0.86338 0.89542 0.83317 0.83784 0.78610 0.73957 0.84254 0.84419 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.28 13.96 55.43 0.77 -26.50 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 8 H 0.08 2.50 8.06 -52.48 -0.42 2.07 16 9 C 0.22 5.38 4.29 -5.19 -0.02 5.36 16 10 N -0.57 -12.51 2.44 -177.72 -0.43 -12.94 16 11 C 0.19 3.44 5.88 -5.20 -0.03 3.41 16 12 C -0.03 -0.46 6.90 -35.62 -0.25 -0.70 16 13 C -0.19 -3.15 10.74 -39.70 -0.43 -3.58 16 14 C -0.22 -2.95 10.91 -39.70 -0.43 -3.39 16 15 C -0.05 -0.59 12.09 29.41 0.36 -0.24 16 16 O -0.17 -2.67 9.77 5.72 0.06 -2.62 16 17 C 0.57 12.61 6.28 -12.54 -0.08 12.53 16 18 O -0.52 -13.63 16.66 5.27 0.09 -13.54 16 19 C -0.18 -3.15 3.87 -104.79 -0.41 -3.56 16 20 C 0.17 2.52 6.24 -38.70 -0.24 2.28 16 21 O -0.48 -7.41 12.95 -18.66 -0.24 -7.65 16 22 C -0.17 -1.79 9.97 -39.48 -0.39 -2.18 16 23 C -0.07 -0.61 10.02 -39.56 -0.40 -1.01 16 24 C -0.17 -1.92 10.00 -39.56 -0.40 -2.31 16 25 C 0.16 2.41 7.04 -38.97 -0.27 2.14 16 26 F -0.12 -2.16 16.20 2.25 0.04 -2.12 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.03 0.79 7.06 -51.93 -0.37 0.43 16 29 H 0.04 1.05 6.79 -51.93 -0.35 0.70 16 30 H 0.12 2.06 8.11 -51.93 -0.42 1.64 16 31 H 0.09 1.44 6.27 -51.93 -0.33 1.11 16 32 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 33 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 34 H 0.20 1.71 8.06 -52.48 -0.42 1.29 16 35 H 0.40 4.69 9.06 45.56 0.41 5.10 16 36 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -36.25 341.85 -5.85 -42.10 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.18 Total: 5.76 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -3.43 Total: -4.58 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.34 Total: -39.44 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.10 Total: -23.81 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.25 -5.85 -42.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123164297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.342 kcal (2) G-P(sol) polarization free energy of solvation -36.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds