Wall clock time and date at job start Tue Mar 31 2020 12:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00118 * 2 1 4 4 H 1.48502 * 109.47287 * 269.99954 * 3 2 1 5 5 H 1.48496 * 109.47221 * 29.99585 * 3 2 1 6 6 H 1.48499 * 109.47383 * 150.00057 * 3 2 1 7 7 C 1.37875 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00181 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00061 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47094 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00080 * 270.00148 * 10 9 7 12 12 C 1.50703 * 109.47157 * 274.41838 * 11 10 9 13 13 C 1.34516 * 125.78545 * 84.71090 * 12 11 10 14 14 C 1.41387 * 106.83825 * 180.02562 * 13 12 11 15 15 C 1.34510 * 106.83963 * 0.02562 * 14 13 12 16 16 O 1.34301 * 125.79330 * 264.40590 * 12 11 10 17 17 C 1.34772 * 119.99709 * 90.00353 * 10 9 7 18 18 O 1.21608 * 120.00213 * 4.91568 * 17 10 9 19 19 C 1.47388 * 120.00033 * 184.91868 * 17 10 9 20 20 C 1.40235 * 120.21249 * 85.33996 * 19 17 10 21 21 O 1.35655 * 120.13674 * 359.70406 * 20 19 17 22 22 C 1.38587 * 119.72531 * 179.72750 * 20 19 17 23 23 C 1.38176 * 120.15896 * 359.97438 * 22 20 19 24 24 C 1.38366 * 120.43304 * 0.02562 * 23 22 20 25 25 C 1.38171 * 120.27328 * 359.97438 * 24 23 22 26 26 F 1.35106 * 120.08445 * 179.97438 * 25 24 23 27 27 H 0.96998 * 119.99993 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46536 * 59.99960 * 9 7 2 29 29 H 1.08995 * 109.46911 * 300.00134 * 9 7 2 30 30 H 1.09002 * 109.47696 * 34.41935 * 11 10 9 31 31 H 1.09002 * 109.47323 * 154.42235 * 11 10 9 32 32 H 1.07997 * 126.58243 * 0.04071 * 13 12 11 33 33 H 1.08005 * 126.57911 * 179.97438 * 14 13 12 34 34 H 1.08004 * 125.78813 * 180.02562 * 15 14 13 35 35 H 0.96699 * 114.00285 * 95.22237 * 21 20 19 36 36 H 1.08003 * 119.91990 * 180.02562 * 22 20 19 37 37 H 1.08006 * 119.78166 * 180.02562 * 23 22 20 38 38 H 1.08004 * 119.86411 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2434 -3.2651 1.2714 12 6 5.6309 -2.9401 1.7616 13 6 5.9783 -1.8555 2.4775 14 6 7.3682 -1.9517 2.7183 15 6 7.7870 -3.0890 2.1347 16 8 6.7293 -3.6869 1.5627 17 6 4.2249 -3.2114 -1.1644 18 8 4.1089 -2.6119 -2.2161 19 6 4.6116 -4.6337 -1.1658 20 6 3.6282 -5.6324 -1.1201 21 8 2.3156 -5.2939 -1.0685 22 6 4.0029 -6.9666 -1.1276 23 6 5.3398 -7.3119 -1.1803 24 6 6.3155 -6.3319 -1.2255 25 6 5.9620 -4.9962 -1.2189 26 9 6.9179 -4.0424 -1.2627 27 1 -0.4850 0.8400 -0.0004 28 1 3.8744 -0.6800 0.8912 29 1 3.8751 -0.6805 -0.8888 30 1 3.5113 -2.9374 2.0095 31 1 4.1533 -4.3413 1.1233 32 1 5.3216 -1.0635 2.8056 33 1 7.9770 -1.2468 3.2652 34 1 8.8009 -3.4612 2.1320 35 1 1.8791 -5.2784 -1.9312 36 1 3.2482 -7.7383 -1.0929 37 1 5.6250 -8.3536 -1.1862 38 1 7.3578 -6.6121 -1.2661 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123164297.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:01 Heat of formation + Delta-G solvation = -89.801435 kcal Electronic energy + Delta-G solvation = -27582.858831 eV Core-core repulsion = 23499.607056 eV Total energy + Delta-G solvation = -4083.251775 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.03455 -43.47660 -41.45258 -39.81754 -37.60513 -37.09665 -34.86581 -33.88063 -32.41405 -31.71160 -30.81785 -29.77237 -26.94408 -25.62988 -23.78322 -23.66289 -22.63492 -21.75838 -20.71897 -19.68063 -19.23078 -18.72367 -18.12665 -17.97561 -17.63939 -17.39659 -16.85547 -16.62591 -16.37027 -16.03395 -15.85180 -15.61114 -15.09627 -14.90448 -14.73972 -14.39943 -14.15985 -13.79869 -13.64380 -13.57697 -13.29409 -13.19216 -13.03771 -12.72982 -12.70431 -12.54405 -12.17295 -12.00596 -11.78204 -11.05107 -10.86400 -10.84134 -10.00466 -9.78254 -9.71901 -9.44757 -8.36315 -6.41447 -0.16006 0.03336 0.69899 1.28847 1.32386 1.39092 1.40856 1.65739 2.03591 2.24360 2.27471 2.39857 2.86512 2.96461 3.32881 3.41504 3.71003 3.90622 3.93389 4.00241 4.13029 4.25841 4.29120 4.45117 4.51766 4.66305 4.76415 4.85302 4.89775 5.00352 5.01989 5.15842 5.17470 5.23578 5.34486 5.40239 5.60081 5.69657 6.18391 6.18913 6.37035 6.60357 6.62347 7.01243 7.23148 8.79977 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.006152 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.786612 B = 4550.352145 C = 6058.377236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.021 3.979 3 Si 0.937 3.063 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.244 1.244 7 C -0.534 4.534 8 H 0.039 0.961 9 C 0.227 3.773 10 N -0.578 5.578 11 C 0.195 3.805 12 C -0.051 4.051 13 C -0.205 4.205 14 C -0.227 4.227 15 C -0.031 4.031 16 O -0.178 6.178 17 C 0.564 3.436 18 O -0.583 6.583 19 C -0.214 4.214 20 C 0.153 3.847 21 O -0.504 6.504 22 C -0.149 4.149 23 C -0.040 4.040 24 C -0.155 4.155 25 C 0.132 3.868 26 F -0.143 7.143 27 H 0.270 0.730 28 H 0.049 0.951 29 H 0.016 0.984 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.145 0.855 33 H 0.171 0.829 34 H 0.243 0.757 35 H 0.411 0.589 36 H 0.172 0.828 37 H 0.192 0.808 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.748 -16.835 3.605 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.194 1.194 6 H -0.168 1.168 7 C -0.573 4.573 8 H 0.057 0.943 9 C 0.106 3.894 10 N -0.307 5.307 11 C 0.072 3.928 12 C -0.102 4.102 13 C -0.226 4.226 14 C -0.246 4.246 15 C -0.098 4.098 16 O -0.074 6.074 17 C 0.353 3.647 18 O -0.464 6.464 19 C -0.218 4.218 20 C 0.107 3.893 21 O -0.318 6.318 22 C -0.167 4.167 23 C -0.058 4.058 24 C -0.173 4.173 25 C 0.112 3.888 26 F -0.122 7.122 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.034 0.966 30 H 0.132 0.868 31 H 0.115 0.885 32 H 0.163 0.837 33 H 0.189 0.811 34 H 0.259 0.741 35 H 0.271 0.729 36 H 0.190 0.810 37 H 0.209 0.791 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 16.625 -16.571 3.514 23.735 hybrid contribution -0.383 1.884 -0.582 2.009 sum 16.242 -14.687 2.932 22.093 Atomic orbital electron populations 1.70016 1.07867 1.28311 1.51478 1.25686 0.95600 1.02718 0.93806 0.85872 0.79912 0.79157 0.79045 1.20228 1.19407 1.16768 1.21433 0.90619 0.93752 1.51462 0.94253 1.19391 0.93475 0.79386 0.97174 1.47886 1.62491 1.15067 1.05233 1.19825 0.88456 0.98551 0.85978 1.22793 0.89034 0.94480 1.03926 1.21920 0.97566 0.99440 1.03631 1.22121 0.94510 1.00919 1.07012 1.24860 0.92442 0.94670 0.97875 1.84008 1.16037 1.45785 1.61532 1.18472 0.75868 0.86959 0.83439 1.90722 1.54165 1.68823 1.32663 1.20363 0.94830 0.93357 1.13285 1.18511 0.82822 0.91241 0.96679 1.84753 1.19144 1.91569 1.36297 1.21813 0.98963 0.93690 1.02276 1.21544 0.90227 1.01438 0.92560 1.21471 1.03613 0.88478 1.03774 1.17807 0.82755 0.87341 1.00896 1.91495 1.62620 1.64554 1.93506 0.92115 0.93340 0.96592 0.86825 0.88461 0.83747 0.81138 0.74130 0.72910 0.81038 0.79109 0.80951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.31 13.96 21.45 0.30 -59.01 16 2 C 0.02 1.25 5.47 84.65 0.46 1.71 16 3 Si 0.94 45.54 27.47 68.60 1.88 47.42 16 4 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.24 -10.94 6.54 99.48 0.65 -10.29 16 7 C -0.53 -32.17 9.94 25.60 0.25 -31.92 16 8 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 9 C 0.23 11.91 4.29 85.63 0.37 12.28 16 10 N -0.58 -26.74 2.44 -834.43 -2.04 -28.77 16 11 C 0.19 7.29 5.88 85.64 0.50 7.80 16 12 C -0.05 -1.73 6.90 24.83 0.17 -1.56 16 13 C -0.21 -6.54 10.74 22.19 0.24 -6.30 16 14 C -0.23 -5.70 10.91 22.19 0.24 -5.45 16 15 C -0.03 -0.71 12.09 66.97 0.81 0.10 16 16 O -0.18 -5.31 9.77 -2.44 -0.02 -5.33 16 17 C 0.56 26.51 6.28 86.65 0.54 27.06 16 18 O -0.58 -32.57 16.66 -4.06 -0.07 -32.64 16 19 C -0.21 -7.63 3.87 -19.97 -0.08 -7.71 16 20 C 0.15 4.48 6.24 22.84 0.14 4.62 16 21 O -0.50 -16.34 12.95 -89.70 -1.16 -17.50 16 22 C -0.15 -2.72 9.97 22.34 0.22 -2.49 16 23 C -0.04 -0.54 10.02 22.29 0.22 -0.32 16 24 C -0.15 -2.90 10.00 22.28 0.22 -2.68 16 25 C 0.13 3.98 7.04 22.66 0.16 4.14 16 26 F -0.14 -4.95 16.20 44.97 0.73 -4.22 16 27 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 28 H 0.05 2.37 7.06 -2.39 -0.02 2.35 16 29 H 0.02 0.91 6.79 -2.39 -0.02 0.89 16 30 H 0.11 4.22 8.11 -2.39 -0.02 4.20 16 31 H 0.10 3.36 6.27 -2.39 -0.01 3.35 16 32 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 33 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.24 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.41 10.50 9.06 -74.06 -0.67 9.83 16 36 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.19 0.70 8.06 -2.91 -0.02 0.67 16 38 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -86.24 341.85 4.50 -81.73 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.39 Total: 19.04 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 4.49 Total: -0.73 kcal Atomic # 7 Polarization: -86.05 SS G_CDS: -1.74 Total: -87.78 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -1.25 Total: -55.47 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.73 Total: -4.22 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -86.24 4.50 -81.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123164297.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.068 kcal (2) G-P(sol) polarization free energy of solvation -86.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds