Wall clock time and date at job start Tue Mar 31 2020 13:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46883 * 2 1 4 4 H 1.08997 * 109.46967 * 303.41571 * 3 2 1 5 5 C 1.50693 * 109.47131 * 183.41440 * 3 2 1 6 6 H 1.08000 * 120.00221 * 240.00354 * 5 3 2 7 7 C 1.37880 * 120.00187 * 59.99751 * 5 3 2 8 8 N 1.31521 * 119.99863 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00247 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47179 * 60.00188 * 9 7 5 11 11 H 1.48499 * 109.47276 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46894 * 299.99967 * 9 7 5 13 13 N 1.46507 * 109.47164 * 63.41374 * 3 2 1 14 14 S 1.65600 * 119.99653 * 244.16357 * 13 3 2 15 15 O 1.42106 * 106.39778 * 182.04149 * 14 13 3 16 16 O 1.42093 * 106.40286 * 49.12370 * 14 13 3 17 17 C 1.76196 * 107.22124 * 295.58042 * 14 13 3 18 18 C 1.36122 * 120.17399 * 115.78211 * 17 14 13 19 19 C 1.39337 * 120.99062 * 179.97438 * 18 17 14 20 20 C 1.36130 * 120.98727 * 0.08022 * 19 18 17 21 21 C 1.40503 * 119.65300 * 359.94340 * 20 19 18 22 22 C 1.40544 * 121.29305 * 180.02562 * 21 20 19 23 23 C 1.36088 * 119.65387 * 179.97438 * 22 21 20 24 24 C 1.39378 * 121.00020 * 0.02782 * 23 22 21 25 25 C 1.36092 * 120.98750 * 359.97340 * 24 23 22 26 26 C 1.40507 * 120.17093 * 295.76651 * 17 14 13 27 27 H 1.09000 * 109.46706 * 176.58670 * 1 2 3 28 28 H 1.08998 * 109.47059 * 296.58030 * 1 2 3 29 29 H 1.08993 * 109.47530 * 56.58749 * 1 2 3 30 30 H 1.08997 * 109.47052 * 239.99874 * 2 1 3 31 31 H 1.09000 * 109.46956 * 119.99530 * 2 1 3 32 32 H 0.96999 * 120.00122 * 179.97438 * 8 7 5 33 33 H 0.96998 * 119.99942 * 64.16437 * 13 3 2 34 34 H 1.08004 * 119.50566 * 359.97438 * 18 17 14 35 35 H 1.07998 * 119.50550 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.16983 * 180.22407 * 20 19 18 37 37 H 1.08007 * 120.17319 * 359.94540 * 22 21 20 38 38 H 1.08004 * 119.50266 * 180.02562 * 23 22 21 39 39 H 1.07993 * 119.51061 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.17377 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6275 1.9737 -0.8578 5 6 3.5445 1.4434 -0.0846 6 1 4.1294 1.8952 0.7029 7 6 4.1745 0.8674 -1.1674 8 7 3.4622 0.3176 -2.1267 9 14 6.0396 0.8679 -1.2720 10 1 6.6011 0.1438 -0.1033 11 1 6.4653 0.1930 -2.5243 12 1 6.5349 2.2678 -1.2717 13 7 1.6199 2.1090 1.2352 14 16 0.5785 3.3949 1.1692 15 8 0.4075 3.8417 2.5073 16 8 -0.5030 2.9932 0.3398 17 6 1.4065 4.6933 0.3131 18 6 0.9305 5.1370 -0.8825 19 6 1.5714 6.1630 -1.5738 20 6 2.6933 6.7505 -1.0743 21 6 3.2145 6.3190 0.1570 22 6 4.3702 6.9016 0.7049 23 6 4.8459 6.4580 1.9003 24 6 4.2045 5.4320 2.5921 25 6 3.0833 4.8443 2.0925 26 6 2.5614 5.2765 0.8612 27 1 -0.3633 -1.0259 -0.0612 28 1 -0.3633 0.4598 0.9190 29 1 -0.3634 0.5658 -0.8577 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9054 -0.0873 -2.8886 33 1 1.9518 1.7971 2.0916 34 1 0.0427 4.6869 -1.3017 35 1 1.1728 6.4966 -2.5205 36 1 3.1774 7.5472 -1.6195 37 1 4.8785 7.6968 0.1798 38 1 5.7340 6.9077 2.3193 39 1 4.6030 5.0984 3.5387 40 1 2.5965 4.0506 2.6398 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132163391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:52 Heat of formation + Delta-G solvation = -36.400438 kcal Electronic energy + Delta-G solvation = -25540.001790 eV Core-core repulsion = 22025.278832 eV Total energy + Delta-G solvation = -3514.722958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.16514 -36.89443 -36.26092 -35.86808 -35.30863 -32.77089 -32.21403 -30.52323 -30.17267 -29.17024 -26.64428 -23.58345 -23.04557 -22.83783 -22.28183 -20.09922 -18.99909 -17.60977 -17.38652 -16.98584 -16.56028 -16.09361 -15.57234 -15.24357 -14.66277 -14.22377 -13.88703 -13.68708 -13.53130 -13.38037 -13.06236 -12.89253 -12.74571 -12.19501 -11.79555 -11.70317 -11.60847 -11.45159 -11.32142 -11.28507 -11.21202 -10.94608 -10.91766 -10.80688 -10.44229 -10.14265 -10.00481 -9.93297 -9.67715 -9.45116 -8.51385 -8.46407 -8.22968 -7.96563 -6.12002 -4.19921 0.40522 1.06685 1.17668 2.01926 3.03935 3.24970 3.29951 3.32301 3.67769 4.09329 4.35049 4.36049 4.74783 4.78255 4.96413 5.04950 5.11050 5.18209 5.20088 5.45368 5.54846 5.59301 5.68496 5.98569 6.07081 6.24276 6.26395 6.33645 6.35185 6.37345 6.40052 6.60121 6.64893 6.67976 6.86144 6.93097 7.11349 7.13932 7.26792 7.61375 7.68002 7.86233 8.02132 8.26735 8.83197 9.46453 10.92610 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.007472 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.999642 B = 3746.187595 C = 5025.942969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.282 3.718 4 H 0.046 0.954 5 C -0.526 4.526 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -1.098 6.098 14 S 2.689 3.311 15 O -0.981 6.981 16 O -0.962 6.962 17 C -0.652 4.652 18 C 0.004 3.996 19 C -0.143 4.143 20 C -0.054 4.054 21 C -0.073 4.073 22 C -0.100 4.100 23 C -0.124 4.124 24 C -0.098 4.098 25 C -0.116 4.116 26 C 0.038 3.962 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.039 0.961 32 H 0.264 0.736 33 H 0.408 0.592 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 10.636 3.684 11.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.178 3.822 4 H 0.063 0.937 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.859 5.859 14 S 2.778 3.222 15 O -0.971 6.971 16 O -0.952 6.952 17 C -0.737 4.737 18 C -0.015 4.015 19 C -0.162 4.162 20 C -0.072 4.072 21 C -0.073 4.073 22 C -0.118 4.118 23 C -0.142 4.142 24 C -0.116 4.116 25 C -0.134 4.134 26 C 0.037 3.963 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.241 0.759 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.063 10.649 3.641 11.305 hybrid contribution 1.928 0.146 -0.299 1.957 sum 0.865 10.796 3.342 11.334 Atomic orbital electron populations 1.21829 0.98486 0.99152 1.00934 1.21914 0.92405 0.99483 1.02938 1.18563 0.94524 0.89846 0.79251 0.93658 1.21374 0.90941 1.37711 1.06479 0.91888 1.24885 0.98288 0.94956 0.95485 1.69853 1.35218 1.37681 1.09713 0.86629 0.85556 0.78283 0.77409 1.20155 1.21240 1.20284 1.55494 1.67139 1.46499 1.16742 1.01886 0.73922 0.73260 0.73167 1.93535 1.86008 1.82111 1.35462 1.93558 1.50471 1.81308 1.69825 1.30952 1.10725 1.21628 1.10434 1.20808 0.97366 0.92386 0.90939 1.20947 0.96912 0.97751 1.00627 1.21249 0.94712 0.97540 0.93738 1.18108 0.96435 0.97270 0.95530 1.20975 0.95159 0.99620 0.96042 1.20825 1.00136 0.97660 0.95578 1.20829 0.95026 0.95833 0.99949 1.21290 0.97051 1.00370 0.94733 1.17296 0.92110 0.93488 0.93391 0.94874 0.94580 0.92873 0.87914 0.94246 0.92583 0.75889 0.83922 0.85144 0.85189 0.85616 0.85934 0.85579 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.00 37.16 0.33 -2.68 16 2 C -0.13 -2.89 5.44 -26.73 -0.15 -3.04 16 3 C 0.28 6.56 2.27 -69.08 -0.16 6.41 16 4 H 0.05 1.15 7.75 -51.93 -0.40 0.75 16 5 C -0.53 -13.27 8.84 -34.44 -0.30 -13.58 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -23.77 11.30 55.43 0.63 -23.14 16 9 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -1.10 -21.79 4.35 -5.88 -0.03 -21.81 16 14 S 2.69 52.30 4.80 -107.50 -0.52 51.78 16 15 O -0.98 -19.73 16.15 -57.17 -0.92 -20.65 16 16 O -0.96 -20.18 15.44 -57.17 -0.88 -21.06 16 17 C -0.65 -12.24 5.87 -39.49 -0.23 -12.47 16 18 C 0.00 0.08 9.47 -39.93 -0.38 -0.30 16 19 C -0.14 -2.06 9.95 -39.93 -0.40 -2.46 16 20 C -0.05 -0.76 9.77 -39.49 -0.39 -1.14 16 21 C -0.07 -1.17 5.74 -106.83 -0.61 -1.79 16 22 C -0.10 -1.35 9.77 -39.49 -0.39 -1.74 16 23 C -0.12 -1.62 9.95 -39.93 -0.40 -2.02 16 24 C -0.10 -1.43 9.95 -39.93 -0.40 -1.83 16 25 C -0.12 -2.02 9.02 -39.48 -0.36 -2.37 16 26 C 0.04 0.70 5.74 -106.83 -0.61 0.09 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.71 7.43 -51.93 -0.39 0.32 16 29 H 0.05 1.13 8.11 -51.93 -0.42 0.71 16 30 H 0.10 2.58 5.99 -51.93 -0.31 2.27 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.41 7.20 8.96 -34.47 -0.31 6.89 16 34 H 0.14 2.24 7.27 -52.48 -0.38 1.85 16 35 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 37 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 38 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 40 H 0.13 2.28 5.48 -52.49 -0.29 1.99 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -30.82 342.65 -11.10 -41.92 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.00 Total: 9.66 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: -4.52 Total: -37.29 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.60 Total: -44.96 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.81 Total: -41.71 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 52.30 SS G_CDS: -0.52 Total: 51.78 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.82 -11.10 -41.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132163391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.524 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds