Wall clock time and date at job start Tue Mar 31 2020 13:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46883 * 2 1 4 4 H 1.08997 * 109.46967 * 303.41571 * 3 2 1 5 5 C 1.50693 * 109.47131 * 183.41440 * 3 2 1 6 6 H 1.08000 * 120.00221 * 240.00354 * 5 3 2 7 7 C 1.37880 * 120.00187 * 59.99751 * 5 3 2 8 8 N 1.31521 * 119.99863 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00247 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47179 * 60.00188 * 9 7 5 11 11 H 1.48499 * 109.47276 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46894 * 299.99967 * 9 7 5 13 13 N 1.46507 * 109.47164 * 63.41374 * 3 2 1 14 14 S 1.65600 * 119.99653 * 244.16357 * 13 3 2 15 15 O 1.42106 * 106.39778 * 182.04149 * 14 13 3 16 16 O 1.42093 * 106.40286 * 49.12370 * 14 13 3 17 17 C 1.76196 * 107.22124 * 295.58042 * 14 13 3 18 18 C 1.36122 * 120.17399 * 115.78211 * 17 14 13 19 19 C 1.39337 * 120.99062 * 179.97438 * 18 17 14 20 20 C 1.36130 * 120.98727 * 0.08022 * 19 18 17 21 21 C 1.40503 * 119.65300 * 359.94340 * 20 19 18 22 22 C 1.40544 * 121.29305 * 180.02562 * 21 20 19 23 23 C 1.36088 * 119.65387 * 179.97438 * 22 21 20 24 24 C 1.39378 * 121.00020 * 0.02782 * 23 22 21 25 25 C 1.36092 * 120.98750 * 359.97340 * 24 23 22 26 26 C 1.40507 * 120.17093 * 295.76651 * 17 14 13 27 27 H 1.09000 * 109.46706 * 176.58670 * 1 2 3 28 28 H 1.08998 * 109.47059 * 296.58030 * 1 2 3 29 29 H 1.08993 * 109.47530 * 56.58749 * 1 2 3 30 30 H 1.08997 * 109.47052 * 239.99874 * 2 1 3 31 31 H 1.09000 * 109.46956 * 119.99530 * 2 1 3 32 32 H 0.96999 * 120.00122 * 179.97438 * 8 7 5 33 33 H 0.96998 * 119.99942 * 64.16437 * 13 3 2 34 34 H 1.08004 * 119.50566 * 359.97438 * 18 17 14 35 35 H 1.07998 * 119.50550 * 180.02562 * 19 18 17 36 36 H 1.07999 * 120.16983 * 180.22407 * 20 19 18 37 37 H 1.08007 * 120.17319 * 359.94540 * 22 21 20 38 38 H 1.08004 * 119.50266 * 180.02562 * 23 22 21 39 39 H 1.07993 * 119.51061 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.17377 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6275 1.9737 -0.8578 5 6 3.5445 1.4434 -0.0846 6 1 4.1294 1.8952 0.7029 7 6 4.1745 0.8674 -1.1674 8 7 3.4622 0.3176 -2.1267 9 14 6.0396 0.8679 -1.2720 10 1 6.6011 0.1438 -0.1033 11 1 6.4653 0.1930 -2.5243 12 1 6.5349 2.2678 -1.2717 13 7 1.6199 2.1090 1.2352 14 16 0.5785 3.3949 1.1692 15 8 0.4075 3.8417 2.5073 16 8 -0.5030 2.9932 0.3398 17 6 1.4065 4.6933 0.3131 18 6 0.9305 5.1370 -0.8825 19 6 1.5714 6.1630 -1.5738 20 6 2.6933 6.7505 -1.0743 21 6 3.2145 6.3190 0.1570 22 6 4.3702 6.9016 0.7049 23 6 4.8459 6.4580 1.9003 24 6 4.2045 5.4320 2.5921 25 6 3.0833 4.8443 2.0925 26 6 2.5614 5.2765 0.8612 27 1 -0.3633 -1.0259 -0.0612 28 1 -0.3633 0.4598 0.9190 29 1 -0.3634 0.5658 -0.8577 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.9054 -0.0873 -2.8886 33 1 1.9518 1.7971 2.0916 34 1 0.0427 4.6869 -1.3017 35 1 1.1728 6.4966 -2.5205 36 1 3.1774 7.5472 -1.6195 37 1 4.8785 7.6968 0.1798 38 1 5.7340 6.9077 2.3193 39 1 4.6030 5.0984 3.5387 40 1 2.5965 4.0506 2.6398 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132163391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:51 Heat of formation + Delta-G solvation = -55.074864 kcal Electronic energy + Delta-G solvation = -25540.811573 eV Core-core repulsion = 22025.278832 eV Total energy + Delta-G solvation = -3515.532742 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29663 -38.44981 -37.71452 -37.36206 -36.91492 -34.17063 -33.89638 -32.23320 -31.31659 -30.30397 -28.54324 -24.87912 -24.73858 -24.02147 -23.46269 -21.91163 -20.51284 -19.12170 -18.57510 -18.53035 -18.04291 -17.54696 -17.00896 -16.73620 -16.29280 -15.58032 -15.31204 -15.08454 -14.84086 -14.71569 -14.58951 -14.48239 -13.83186 -13.53680 -13.50457 -13.38261 -13.13903 -13.08596 -13.04879 -12.70054 -12.62680 -12.52556 -12.45428 -12.14130 -12.03439 -11.82317 -11.55899 -11.48844 -11.26062 -11.16233 -10.47871 -9.98930 -9.61794 -9.10765 -8.09213 -6.22630 -0.78570 -0.42867 0.02217 0.84378 1.43666 1.44245 1.51275 1.90524 2.14035 2.46079 2.69923 3.06926 3.18523 3.44006 3.70190 3.81176 3.88464 4.04478 4.19221 4.37743 4.39821 4.48068 4.52796 4.56189 4.60953 4.67871 4.85377 4.91301 4.98222 5.13257 5.14351 5.20534 5.24099 5.37228 5.47247 5.51112 5.52766 5.68454 5.76411 5.80649 6.02693 6.07670 6.16715 6.43857 6.85928 7.46025 8.94420 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.007472 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.999642 B = 3746.187595 C = 5025.942969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.291 3.709 4 H 0.020 0.980 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.276 1.276 13 N -1.096 6.096 14 S 2.701 3.299 15 O -0.993 6.993 16 O -0.985 6.985 17 C -0.683 4.683 18 C -0.009 4.009 19 C -0.156 4.156 20 C -0.041 4.041 21 C -0.100 4.100 22 C -0.094 4.094 23 C -0.129 4.129 24 C -0.094 4.094 25 C -0.159 4.159 26 C 0.011 3.989 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.415 0.585 34 H 0.142 0.858 35 H 0.166 0.834 36 H 0.176 0.824 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 12.641 3.570 13.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C 0.186 3.814 4 H 0.037 0.963 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.177 4.177 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.856 5.856 14 S 2.793 3.207 15 O -0.983 6.983 16 O -0.975 6.975 17 C -0.771 4.771 18 C -0.028 4.028 19 C -0.175 4.175 20 C -0.059 4.059 21 C -0.101 4.101 22 C -0.112 4.112 23 C -0.146 4.146 24 C -0.111 4.111 25 C -0.178 4.178 26 C 0.010 3.990 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.250 0.750 34 H 0.160 0.840 35 H 0.184 0.816 36 H 0.193 0.807 37 H 0.184 0.816 38 H 0.179 0.821 39 H 0.168 0.832 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.039 12.626 3.567 13.162 hybrid contribution 1.306 -0.364 -0.243 1.378 sum 2.345 12.262 3.324 12.919 Atomic orbital electron populations 1.21747 0.96951 1.00446 1.00594 1.21810 0.93794 0.98890 1.02019 1.18247 0.93607 0.89991 0.79591 0.96269 1.21621 0.91986 1.37212 1.06370 0.92012 1.25557 1.01972 0.94874 0.95333 1.69976 1.36545 1.38412 1.10119 0.85748 0.81147 0.78145 0.77434 1.19534 1.21114 1.20161 1.55275 1.67072 1.47134 1.16138 1.01250 0.73489 0.73188 0.72747 1.93505 1.86280 1.82186 1.36344 1.93515 1.51842 1.81952 1.70174 1.30654 1.12296 1.22382 1.11761 1.21108 0.97693 0.93309 0.90736 1.21345 0.97245 0.97070 1.01829 1.21810 0.93860 0.97422 0.92768 1.18584 0.97643 0.97267 0.96575 1.21479 0.93880 0.99688 0.96117 1.21298 1.01042 0.96900 0.95398 1.21265 0.93741 0.95405 1.00727 1.21396 0.99055 1.01847 0.95467 1.17593 0.92404 0.94754 0.94235 0.92585 0.94002 0.94246 0.90254 0.93601 0.92699 0.74976 0.83981 0.81642 0.80677 0.81623 0.82076 0.83193 0.86081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 9.00 71.98 0.65 -5.19 16 2 C -0.13 -5.81 5.44 30.60 0.17 -5.64 16 3 C 0.29 13.96 2.27 44.24 0.10 14.06 16 4 H 0.02 1.03 7.75 -2.39 -0.02 1.01 16 5 C -0.53 -27.30 8.84 25.60 0.23 -27.08 16 6 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -49.68 11.30 21.45 0.24 -49.44 16 9 Si 0.95 41.70 29.54 68.60 2.03 43.72 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 13 N -1.10 -45.17 4.35 -172.52 -0.75 -45.92 16 14 S 2.70 109.93 4.80 -56.49 -0.27 109.66 16 15 O -0.99 -41.67 16.15 -128.00 -2.07 -43.74 16 16 O -0.98 -43.30 15.44 -128.00 -1.98 -45.27 16 17 C -0.68 -26.45 5.87 22.33 0.13 -26.32 16 18 C -0.01 -0.31 9.47 22.04 0.21 -0.10 16 19 C -0.16 -4.23 9.95 22.04 0.22 -4.01 16 20 C -0.04 -1.02 9.77 22.33 0.22 -0.80 16 21 C -0.10 -3.02 5.74 -21.30 -0.12 -3.15 16 22 C -0.09 -2.19 9.77 22.33 0.22 -1.97 16 23 C -0.13 -2.91 9.95 22.04 0.22 -2.69 16 24 C -0.09 -2.57 9.95 22.05 0.22 -2.35 16 25 C -0.16 -5.57 9.02 22.33 0.20 -5.37 16 26 C 0.01 0.41 5.74 -21.30 -0.12 0.29 16 27 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.66 7.43 -2.39 -0.02 1.65 16 29 H 0.04 1.72 8.11 -2.39 -0.02 1.70 16 30 H 0.08 4.09 5.99 -2.39 -0.01 4.08 16 31 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 33 H 0.42 15.29 8.96 -96.74 -0.87 14.43 16 34 H 0.14 4.69 7.27 -2.91 -0.02 4.66 16 35 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 40 H 0.12 4.33 5.48 -2.91 -0.02 4.32 16 Total: -1.00 -68.21 342.65 0.38 -67.82 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.20 Total: 31.85 kcal Atomic # 6 Polarization: -71.66 SS G_CDS: 2.98 Total: -68.68 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -0.51 Total: -95.35 kcal Atomic # 8 Polarization: -84.97 SS G_CDS: -4.04 Total: -89.02 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 109.93 SS G_CDS: -0.27 Total: 109.66 kcal Total: -68.21 0.38 -67.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132163391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.750 kcal (2) G-P(sol) polarization free energy of solvation -68.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds