Wall clock time and date at job start Tue Mar 31 2020 13:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42903 * 109.46809 * 27.58758 * 3 2 1 5 5 C 1.42901 * 113.99742 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47364 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47513 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99898 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00342 * 180.02562 * 7 6 5 10 10 C 1.40134 * 120.00068 * 185.53129 * 9 7 6 11 11 C 1.38648 * 120.10201 * 24.81560 * 10 9 7 12 12 C 1.38254 * 120.00935 * 180.02562 * 11 10 9 13 13 C 1.38304 * 120.20737 * 359.97261 * 12 11 10 14 14 C 1.38191 * 120.20073 * 0.02728 * 13 12 11 15 15 C 1.38782 * 119.99201 * 359.97438 * 14 13 12 16 16 S 1.76198 * 120.10682 * 180.02562 * 15 14 13 17 17 C 1.81399 * 103.00125 * 359.95629 * 16 15 14 18 18 C 1.50695 * 109.47411 * 179.97438 * 17 16 15 19 19 H 1.08008 * 119.99843 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00093 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00238 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00203 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47214 * 89.99814 * 22 20 18 24 24 H 1.48496 * 109.47166 * 209.99956 * 22 20 18 25 25 H 1.48496 * 109.46623 * 329.99754 * 22 20 18 26 26 H 4.38443 * 5.44384 * 180.02562 * 4 1 2 27 27 H 1.08993 * 109.47023 * 267.58546 * 3 2 1 28 28 H 1.09006 * 109.46978 * 147.58015 * 3 2 1 29 29 H 1.09008 * 109.47247 * 60.00014 * 5 4 3 30 30 H 1.09000 * 109.47241 * 300.00087 * 5 4 3 31 31 H 1.09003 * 109.46813 * 59.99739 * 6 5 4 32 32 H 1.09001 * 109.46927 * 300.00502 * 6 5 4 33 33 H 0.97000 * 119.99717 * 5.52573 * 9 7 6 34 34 H 1.08003 * 119.99520 * 359.97438 * 11 10 9 35 35 H 1.07995 * 119.89520 * 179.97438 * 12 11 10 36 36 H 1.08001 * 119.89265 * 179.74764 * 13 12 11 37 37 H 1.08006 * 120.00386 * 180.02562 * 14 13 12 38 38 H 1.09003 * 109.46737 * 300.00429 * 17 16 15 39 39 H 1.09002 * 109.46929 * 59.99775 * 17 16 15 40 40 H 0.96999 * 120.00173 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.1933 -0.6240 5 6 4.5474 -1.2924 -0.6767 6 6 4.9426 -2.6027 -1.3607 7 6 6.4448 -2.7076 -1.4158 8 8 7.1320 -1.8216 -0.9531 9 7 7.0250 -3.7858 -1.9793 10 6 8.4169 -3.9395 -1.9279 11 6 9.1472 -3.3296 -0.9194 12 6 10.5204 -3.4822 -0.8709 13 6 11.1702 -4.2427 -1.8259 14 6 10.4509 -4.8544 -2.8349 15 6 9.0721 -4.7068 -2.8916 16 16 8.1518 -5.4860 -4.1764 17 6 9.4334 -6.3358 -5.1386 18 6 8.7950 -7.0628 -6.2939 19 1 7.7252 -7.0177 -6.4355 20 6 9.5765 -7.7855 -7.1702 21 7 9.0194 -8.4195 -8.1789 22 14 11.4267 -7.8640 -6.9250 23 1 11.7625 -9.0229 -6.0593 24 1 12.0944 -8.0203 -8.2422 25 1 11.8939 -6.6114 -6.2787 26 1 -1.0498 -0.0002 -0.0003 27 1 3.0093 0.0441 1.0267 28 1 3.0090 0.8684 -0.5510 29 1 4.9506 -1.2756 0.3359 30 1 4.9495 -0.4515 -1.2419 31 1 4.5393 -2.6200 -2.3733 32 1 4.5405 -3.4434 -0.7952 33 1 6.4790 -4.4553 -2.4202 34 1 8.6433 -2.7346 -0.1721 35 1 11.0874 -3.0060 -0.0848 36 1 12.2436 -4.3552 -1.7855 37 1 10.9615 -5.4480 -3.5789 38 1 10.1471 -5.6048 -5.5185 39 1 9.9516 -7.0520 -4.5008 40 1 9.5691 -8.9282 -8.7952 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132576707.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:36 Heat of formation + Delta-G solvation = -20.232209 kcal Electronic energy + Delta-G solvation = -22463.457341 eV Core-core repulsion = 18949.435490 eV Total energy + Delta-G solvation = -3514.021851 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68145 -39.63776 -38.93847 -35.94856 -35.25468 -34.47223 -32.82007 -32.26558 -31.31201 -30.40665 -27.94940 -25.44192 -24.74507 -24.06055 -22.97181 -21.34017 -19.59521 -19.34887 -18.77191 -18.43809 -17.92451 -17.50322 -17.14010 -16.65907 -16.43466 -16.15002 -15.87060 -15.54956 -15.22654 -14.97056 -14.93113 -14.64870 -14.44928 -14.32383 -13.87890 -13.61880 -13.16425 -12.81449 -12.74027 -12.66592 -12.49528 -12.21599 -12.11394 -11.77639 -11.59485 -11.54295 -11.45092 -11.01218 -10.94924 -10.90454 -10.59313 -10.56778 -9.33196 -8.41306 -8.23678 -6.52201 0.17550 0.32670 0.67331 1.32799 1.34072 1.40571 1.43945 1.47828 1.71419 1.82133 1.98034 2.26073 2.77532 2.91800 2.93491 3.52838 3.61141 3.86729 4.01137 4.08628 4.18392 4.30207 4.37398 4.44583 4.45233 4.48313 4.50823 4.53182 4.64116 4.76336 4.79208 4.88207 5.03148 5.13193 5.24583 5.29065 5.43165 5.55401 5.99603 6.00611 6.05991 6.28073 6.51609 6.59605 6.92965 7.11060 8.73863 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.002539 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.481882 B =11023.209093 C =12663.452168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.239 4.239 3 C 0.168 3.832 4 O -0.402 6.402 5 C 0.082 3.918 6 C -0.134 4.134 7 C 0.523 3.477 8 O -0.549 6.549 9 N -0.661 5.661 10 C 0.148 3.852 11 C -0.125 4.125 12 C -0.106 4.106 13 C -0.115 4.115 14 C -0.133 4.133 15 C -0.126 4.126 16 S -0.141 6.141 17 C 0.036 3.964 18 C -0.533 4.533 19 H 0.043 0.957 20 C 0.025 3.975 21 N -0.934 5.934 22 Si 0.946 3.054 23 H -0.260 1.260 24 H -0.277 1.277 25 H -0.245 1.245 26 H 0.252 0.748 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.420 0.580 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.121 0.879 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 14.980 19.750 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.239 4.239 3 C 0.093 3.907 4 O -0.322 6.322 5 C 0.006 3.994 6 C -0.173 4.173 7 C 0.313 3.687 8 O -0.427 6.427 9 N -0.305 5.305 10 C 0.047 3.953 11 C -0.146 4.146 12 C -0.127 4.127 13 C -0.136 4.136 14 C -0.157 4.157 15 C -0.241 4.241 16 S 0.104 5.896 17 C -0.112 4.112 18 C -0.571 4.571 19 H 0.062 0.938 20 C -0.176 4.176 21 N -0.573 5.573 22 Si 0.768 3.232 23 H -0.185 1.185 24 H -0.202 1.202 25 H -0.168 1.168 26 H 0.268 0.732 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.258 0.742 34 H 0.166 0.834 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.139 0.861 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.785 15.304 19.539 25.730 hybrid contribution 1.557 -0.698 -0.610 1.812 sum -5.228 14.606 18.929 24.474 Atomic orbital electron populations 1.25861 0.96868 0.96632 0.98676 1.23128 0.94952 1.03374 1.02439 1.19252 0.84444 0.88004 0.99031 1.87836 1.21823 1.41491 1.81056 1.22103 0.79701 0.96728 1.00912 1.21454 0.89087 1.00921 1.05834 1.20963 0.91454 0.80034 0.76279 1.90654 1.65787 1.39141 1.47149 1.43624 1.05373 1.25038 1.56476 1.17403 0.83479 0.99500 0.94904 1.21439 0.95035 1.00711 0.97435 1.21403 0.93570 0.98263 0.99496 1.21350 1.01129 0.97032 0.94051 1.21259 0.91942 1.01853 1.00643 1.21851 0.97554 1.05350 0.99387 1.84979 1.17892 1.59648 1.27059 1.21475 0.95219 0.97689 0.96785 1.20572 0.94877 1.31694 1.09993 0.93842 1.25820 1.04359 0.93646 0.93823 1.69997 1.38501 1.32723 1.16046 0.85720 0.78460 0.80383 0.78622 1.18455 1.20242 1.16813 0.73160 0.89121 0.89452 0.91442 0.92109 0.86367 0.85566 0.74200 0.83358 0.82471 0.83001 0.86090 0.93558 0.93448 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 19.25 74.32 1.43 -0.85 16 2 C -0.24 -4.21 13.73 31.13 0.43 -3.78 16 3 C 0.17 2.55 6.41 70.18 0.45 3.00 16 4 O -0.40 -7.67 10.30 -148.98 -1.53 -9.20 16 5 C 0.08 1.39 5.23 71.98 0.38 1.77 16 6 C -0.13 -2.24 6.07 29.85 0.18 -2.06 16 7 C 0.52 12.33 7.64 87.66 0.67 13.00 16 8 O -0.55 -15.49 13.15 -3.08 -0.04 -15.53 16 9 N -0.66 -17.37 5.17 -303.01 -1.57 -18.94 16 10 C 0.15 4.55 6.44 38.22 0.25 4.80 16 11 C -0.12 -3.43 8.72 22.37 0.20 -3.24 16 12 C -0.11 -2.50 10.04 22.29 0.22 -2.27 16 13 C -0.12 -2.90 10.04 22.27 0.22 -2.68 16 14 C -0.13 -4.24 9.36 22.39 0.21 -4.04 16 15 C -0.13 -4.36 6.12 22.71 0.14 -4.23 16 16 S -0.14 -5.62 20.55 -56.49 -1.16 -6.79 16 17 C 0.04 1.67 3.16 71.23 0.23 1.90 16 18 C -0.53 -29.88 9.68 25.60 0.25 -29.63 16 19 H 0.04 2.72 7.96 -2.91 -0.02 2.70 16 20 C 0.02 1.37 5.47 84.65 0.46 1.83 16 21 N -0.93 -56.22 13.96 21.45 0.30 -55.92 16 22 Si 0.95 41.41 27.47 68.60 1.88 43.29 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 26 H 0.25 1.38 7.80 -4.43 -0.03 1.35 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.07 1.07 8.10 -2.38 -0.02 1.05 16 30 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 31 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.42 10.27 7.65 -92.71 -0.71 9.56 16 34 H 0.15 3.99 5.79 -2.91 -0.02 3.97 16 35 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.12 4.01 5.88 -2.91 -0.02 3.99 16 38 H 0.05 2.09 6.81 -2.39 -0.02 2.07 16 39 H 0.05 2.08 7.17 -2.39 -0.02 2.07 16 40 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -70.78 360.97 3.88 -66.89 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.30 Total: 22.66 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 5.71 Total: -26.47 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -1.27 Total: -74.86 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -1.58 Total: -24.73 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.88 Total: 43.29 kcal Atomic # 16 Polarization: -5.62 SS G_CDS: -1.16 Total: -6.79 kcal Total: -70.78 3.88 -66.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132576707.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.661 kcal (2) G-P(sol) polarization free energy of solvation -70.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds