Wall clock time and date at job start Tue Mar 31 2020 12:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86808 * 119.99585 * 2 1 4 4 H 1.48497 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47266 * 300.00307 * 3 2 1 6 6 H 1.48503 * 109.46689 * 60.00162 * 3 2 1 7 7 C 1.38630 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00091 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.35775 * 117.00059 * 174.98261 * 9 7 2 11 11 C 1.38735 * 120.08573 * 5.16824 * 10 9 7 12 12 C 1.38342 * 119.97616 * 180.02562 * 11 10 9 13 13 F 1.35095 * 119.92662 * 180.02562 * 12 11 10 14 14 C 1.38555 * 120.15211 * 0.02562 * 12 11 10 15 15 C 1.38186 * 120.17850 * 359.67735 * 14 12 11 16 16 C 1.38714 * 120.01766 * 0.60261 * 15 14 12 17 17 N 1.40084 * 120.07589 * 179.69912 * 16 15 14 18 18 C 1.34780 * 120.00147 * 335.18897 * 17 16 15 19 19 O 1.21295 * 119.99651 * 354.44959 * 18 17 16 20 20 C 1.50696 * 120.00009 * 174.16993 * 18 17 16 21 21 C 1.53002 * 109.46997 * 180.28143 * 20 18 17 22 22 C 1.50696 * 109.46997 * 179.97438 * 21 20 18 23 23 C 1.34518 * 125.79524 * 89.99548 * 22 21 20 24 24 C 1.41382 * 106.84667 * 179.97438 * 23 22 21 25 25 C 1.34515 * 106.83716 * 0.02562 * 24 23 22 26 26 O 1.34304 * 108.42452 * 359.73244 * 25 24 23 27 27 H 0.96995 * 120.00679 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.01663 * 359.97438 * 11 10 9 29 29 H 1.08007 * 119.91294 * 179.97438 * 14 12 11 30 30 H 1.07994 * 119.99328 * 180.29863 * 15 14 12 31 31 H 0.97001 * 120.00128 * 155.19935 * 17 16 15 32 32 H 1.09010 * 109.47253 * 300.27722 * 20 18 17 33 33 H 1.08997 * 109.47203 * 60.27746 * 20 18 17 34 34 H 1.08997 * 109.46874 * 299.99307 * 21 20 18 35 35 H 1.08997 * 109.47468 * 59.99765 * 21 20 18 36 36 H 1.08006 * 126.57464 * 0.03876 * 23 22 21 37 37 H 1.07995 * 126.58141 * 179.97438 * 24 23 22 38 38 H 1.07997 * 125.78869 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 3.7096 1.3466 -0.0006 5 1 1.8908 2.3966 -1.2124 6 1 1.8908 2.3965 1.2126 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2004 -0.0010 9 8 1.3350 -2.3680 -0.0005 10 6 2.0706 -3.5044 -0.1069 11 6 3.4563 -3.4389 -0.1013 12 6 4.2035 -4.5980 -0.2104 13 9 5.5529 -4.5332 -0.2043 14 6 3.5711 -5.8254 -0.3257 15 6 2.1912 -5.8986 -0.3258 16 6 1.4349 -4.7404 -0.2227 17 7 0.0359 -4.8126 -0.2290 18 6 -0.5824 -5.8578 -0.8135 19 8 0.0660 -6.6835 -1.4211 20 6 -2.0784 -6.0041 -0.7070 21 6 -2.5212 -7.2683 -1.4463 22 6 -4.0172 -7.4149 -1.3392 23 6 -4.9206 -6.9124 -2.2000 24 6 -6.1965 -7.2867 -1.7195 25 6 -5.9966 -7.9950 -0.5936 26 8 -4.6745 -8.0742 -0.3711 27 1 -0.4851 0.8399 -0.0004 28 1 3.9517 -2.4833 -0.0128 29 1 4.1583 -6.7280 -0.4110 30 1 1.7014 -6.8573 -0.4110 31 1 -0.4879 -4.1102 0.1873 32 1 -2.3624 -6.0789 0.3428 33 1 -2.5612 -5.1345 -1.1528 34 1 -2.2374 -7.1935 -2.4960 35 1 -2.0384 -8.1379 -1.0005 36 1 -4.7112 -6.3349 -3.0883 37 1 -7.1489 -7.0487 -2.1697 38 1 -6.7681 -8.4305 0.0239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178021222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:41 Heat of formation + Delta-G solvation = -69.148365 kcal Electronic energy + Delta-G solvation = -25284.619064 eV Core-core repulsion = 21202.262873 eV Total energy + Delta-G solvation = -4082.356191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.27153 -42.66975 -40.21774 -38.69137 -36.40504 -34.24118 -34.04707 -32.89511 -32.43977 -29.70594 -29.22401 -28.00183 -25.56858 -24.65647 -22.46144 -21.86692 -21.58627 -20.46596 -19.93417 -18.39269 -17.93165 -17.59465 -16.79166 -16.63834 -16.03029 -15.74913 -15.27002 -15.06837 -14.98105 -14.55052 -14.30557 -14.03866 -13.75325 -13.63231 -13.48046 -12.99128 -12.92931 -12.74118 -12.49154 -12.34928 -12.17637 -12.12842 -11.69868 -11.43285 -11.15875 -11.03786 -10.75135 -10.53410 -10.04668 -9.84655 -9.83950 -9.38098 -8.99666 -8.57065 -7.91688 -7.11014 -6.63600 -4.21305 1.59364 1.75056 2.08202 2.48863 2.84510 2.89296 3.03854 3.06481 3.11713 3.47214 3.82409 4.31752 4.52657 4.77901 4.82739 4.86494 4.92668 4.94383 5.03370 5.09361 5.15448 5.45182 5.58908 5.61509 5.69682 5.71685 5.84502 5.88853 5.98253 6.04348 6.18811 6.38423 6.51480 6.69302 6.87862 6.91332 7.00377 7.02421 7.15618 7.60612 7.79226 7.85921 8.44012 8.82563 9.42414 10.53567 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.003254 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.576701 B = 8602.209862 C =10810.852021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.095 0.905 9 O -0.170 6.170 10 C 0.156 3.844 11 C -0.257 4.257 12 C 0.127 3.873 13 F -0.151 7.151 14 C -0.226 4.226 15 C -0.061 4.061 16 C 0.062 3.938 17 N -0.647 5.647 18 C 0.510 3.490 19 O -0.537 6.537 20 C -0.137 4.137 21 C -0.023 4.023 22 C -0.006 4.006 23 C -0.211 4.211 24 C -0.214 4.214 25 C -0.047 4.047 26 O -0.176 6.176 27 H 0.272 0.728 28 H 0.143 0.857 29 H 0.123 0.877 30 H 0.148 0.852 31 H 0.418 0.582 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 -10.964 -0.526 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.113 0.887 9 O -0.074 6.074 10 C 0.100 3.900 11 C -0.278 4.278 12 C 0.107 3.893 13 F -0.130 7.130 14 C -0.247 4.247 15 C -0.081 4.081 16 C -0.032 4.032 17 N -0.290 5.290 18 C 0.298 3.702 19 O -0.415 6.415 20 C -0.177 4.177 21 C -0.061 4.061 22 C -0.056 4.056 23 C -0.230 4.230 24 C -0.233 4.233 25 C -0.115 4.115 26 O -0.072 6.072 27 H 0.082 0.918 28 H 0.161 0.839 29 H 0.141 0.859 30 H 0.165 0.835 31 H 0.255 0.745 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.166 0.834 37 H 0.164 0.836 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.127 -11.461 -0.676 14.067 hybrid contribution 0.209 1.473 0.041 1.489 sum -7.918 -9.988 -0.635 12.761 Atomic orbital electron populations 1.70009 1.05931 1.27952 1.45446 1.25283 0.95916 0.98853 0.96132 0.85613 0.79286 0.80032 0.78379 1.18949 1.20011 1.20000 1.21392 0.92016 0.80301 1.53058 0.88742 1.83891 1.33998 1.11309 1.78159 1.18720 0.89519 0.86941 0.94851 1.20851 0.93428 0.98466 1.15065 1.17471 0.75958 0.94379 1.01474 1.91410 1.30138 1.97377 1.94095 1.20503 0.94650 0.95859 1.13640 1.20775 0.92260 0.97418 0.97673 1.16938 0.82309 0.91399 1.12585 1.43216 1.05300 1.24816 1.55662 1.20541 0.89968 0.81406 0.78259 1.90638 1.66959 1.42374 1.41525 1.21647 0.92454 0.99996 1.03578 1.19848 0.84659 0.98387 1.03173 1.22505 0.95192 0.98404 0.89534 1.21658 0.92078 1.06420 1.02838 1.21846 0.99067 1.04089 0.98273 1.24005 0.82724 1.04604 1.00154 1.84030 1.18731 1.59520 1.44934 0.91835 0.83934 0.85914 0.83473 0.74546 0.88253 0.87999 0.87862 0.89164 0.83364 0.83568 0.78266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.15 13.67 55.48 0.76 -22.39 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.50 29.55 -169.99 -5.02 14.48 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.39 -10.20 9.49 30.88 0.29 -9.91 16 8 H 0.10 2.32 5.20 -52.48 -0.27 2.05 16 9 O -0.17 -4.37 9.17 0.03 0.00 -4.37 16 10 C 0.16 3.53 6.66 -38.94 -0.26 3.27 16 11 C -0.26 -5.56 9.14 -39.36 -0.36 -5.92 16 12 C 0.13 2.52 7.29 -39.43 -0.29 2.23 16 13 F -0.15 -2.88 17.26 2.25 0.04 -2.84 16 14 C -0.23 -4.16 10.02 -39.48 -0.40 -4.55 16 15 C -0.06 -1.15 8.72 -39.42 -0.34 -1.49 16 16 C 0.06 1.26 6.45 -83.45 -0.54 0.72 16 17 N -0.65 -11.36 5.29 -9.72 -0.05 -11.41 16 18 C 0.51 7.96 7.64 -10.99 -0.08 7.88 16 19 O -0.54 -9.59 13.15 5.54 0.07 -9.52 16 20 C -0.14 -1.58 5.68 -27.88 -0.16 -1.74 16 21 C -0.02 -0.26 5.04 -27.88 -0.14 -0.40 16 22 C -0.01 -0.07 6.58 -35.63 -0.23 -0.31 16 23 C -0.21 -2.28 10.81 -39.70 -0.43 -2.71 16 24 C -0.21 -2.06 10.91 -39.70 -0.43 -2.49 16 25 C -0.05 -0.44 12.09 29.42 0.36 -0.08 16 26 O -0.18 -2.03 10.65 5.68 0.06 -1.97 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 28 H 0.14 3.08 5.63 -52.49 -0.30 2.79 16 29 H 0.12 1.94 8.06 -52.48 -0.42 1.52 16 30 H 0.15 2.66 5.79 -52.49 -0.30 2.35 16 31 H 0.42 7.10 8.34 -40.82 -0.34 6.76 16 32 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 35 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.15 1.41 8.06 -52.48 -0.42 0.98 16 37 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 340.06 15.07 5.12 5.12 Total: -1.00 -30.10 340.06 -5.86 -35.96 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -3.73 Total: 11.43 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -3.11 Total: -14.49 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.71 Total: -33.81 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: 0.13 Total: -15.86 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.10 -5.86 -35.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178021222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.192 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds