Wall clock time and date at job start Tue Mar 31 2020 12:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86808 * 119.99585 * 2 1 4 4 H 1.48497 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47266 * 300.00307 * 3 2 1 6 6 H 1.48503 * 109.46689 * 60.00162 * 3 2 1 7 7 C 1.38630 * 120.00477 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00091 * 179.97438 * 7 2 1 9 9 O 1.34808 * 120.00027 * 359.97438 * 7 2 1 10 10 C 1.35775 * 117.00059 * 174.98261 * 9 7 2 11 11 C 1.38735 * 120.08573 * 5.16824 * 10 9 7 12 12 C 1.38342 * 119.97616 * 180.02562 * 11 10 9 13 13 F 1.35095 * 119.92662 * 180.02562 * 12 11 10 14 14 C 1.38555 * 120.15211 * 0.02562 * 12 11 10 15 15 C 1.38186 * 120.17850 * 359.67735 * 14 12 11 16 16 C 1.38714 * 120.01766 * 0.60261 * 15 14 12 17 17 N 1.40084 * 120.07589 * 179.69912 * 16 15 14 18 18 C 1.34780 * 120.00147 * 335.18897 * 17 16 15 19 19 O 1.21295 * 119.99651 * 354.44959 * 18 17 16 20 20 C 1.50696 * 120.00009 * 174.16993 * 18 17 16 21 21 C 1.53002 * 109.46997 * 180.28143 * 20 18 17 22 22 C 1.50696 * 109.46997 * 179.97438 * 21 20 18 23 23 C 1.34518 * 125.79524 * 89.99548 * 22 21 20 24 24 C 1.41382 * 106.84667 * 179.97438 * 23 22 21 25 25 C 1.34515 * 106.83716 * 0.02562 * 24 23 22 26 26 O 1.34304 * 108.42452 * 359.73244 * 25 24 23 27 27 H 0.96995 * 120.00679 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.01663 * 359.97438 * 11 10 9 29 29 H 1.08007 * 119.91294 * 179.97438 * 14 12 11 30 30 H 1.07994 * 119.99328 * 180.29863 * 15 14 12 31 31 H 0.97001 * 120.00128 * 155.19935 * 17 16 15 32 32 H 1.09010 * 109.47253 * 300.27722 * 20 18 17 33 33 H 1.08997 * 109.47203 * 60.27746 * 20 18 17 34 34 H 1.08997 * 109.46874 * 299.99307 * 21 20 18 35 35 H 1.08997 * 109.47468 * 59.99765 * 21 20 18 36 36 H 1.08006 * 126.57464 * 0.03876 * 23 22 21 37 37 H 1.07995 * 126.58141 * 179.97438 * 24 23 22 38 38 H 1.07997 * 125.78869 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6179 0.0000 4 1 3.7096 1.3466 -0.0006 5 1 1.8908 2.3966 -1.2124 6 1 1.8908 2.3965 1.2126 7 6 2.0090 -1.2005 -0.0005 8 1 3.0890 -1.2004 -0.0010 9 8 1.3350 -2.3680 -0.0005 10 6 2.0706 -3.5044 -0.1069 11 6 3.4563 -3.4389 -0.1013 12 6 4.2035 -4.5980 -0.2104 13 9 5.5529 -4.5332 -0.2043 14 6 3.5711 -5.8254 -0.3257 15 6 2.1912 -5.8986 -0.3258 16 6 1.4349 -4.7404 -0.2227 17 7 0.0359 -4.8126 -0.2290 18 6 -0.5824 -5.8578 -0.8135 19 8 0.0660 -6.6835 -1.4211 20 6 -2.0784 -6.0041 -0.7070 21 6 -2.5212 -7.2683 -1.4463 22 6 -4.0172 -7.4149 -1.3392 23 6 -4.9206 -6.9124 -2.2000 24 6 -6.1965 -7.2867 -1.7195 25 6 -5.9966 -7.9950 -0.5936 26 8 -4.6745 -8.0742 -0.3711 27 1 -0.4851 0.8399 -0.0004 28 1 3.9517 -2.4833 -0.0128 29 1 4.1583 -6.7280 -0.4110 30 1 1.7014 -6.8573 -0.4110 31 1 -0.4879 -4.1102 0.1873 32 1 -2.3624 -6.0789 0.3428 33 1 -2.5612 -5.1345 -1.1528 34 1 -2.2374 -7.1935 -2.4960 35 1 -2.0384 -8.1379 -1.0005 36 1 -4.7112 -6.3349 -3.0883 37 1 -7.1489 -7.0487 -2.1697 38 1 -6.7681 -8.4305 0.0239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178021222.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:41 Heat of formation + Delta-G solvation = -86.332056 kcal Electronic energy + Delta-G solvation = -25285.364205 eV Core-core repulsion = 21202.262873 eV Total energy + Delta-G solvation = -4083.101332 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.83401 -43.44703 -41.69238 -40.27055 -38.05443 -35.62687 -35.07494 -34.31240 -33.68421 -31.19333 -30.56781 -29.24452 -27.41406 -25.70461 -24.03765 -23.12358 -22.62984 -21.45878 -21.10108 -20.16550 -19.54138 -18.58535 -18.25337 -17.83342 -17.08524 -16.97426 -16.87212 -16.54698 -16.46415 -15.95074 -15.61460 -15.48553 -15.29564 -15.09160 -14.97006 -14.22244 -14.01386 -13.81121 -13.70194 -13.52132 -13.42842 -13.31451 -13.11105 -12.97779 -12.62227 -12.34373 -12.12778 -12.04600 -11.66619 -11.31435 -10.87759 -10.82781 -10.75275 -9.56961 -9.35165 -8.72773 -8.51890 -6.17462 0.15947 0.44720 0.81301 1.37404 1.42849 1.53235 1.56424 1.72196 1.99732 2.13354 2.27645 2.67365 3.01635 3.18569 3.44813 3.54549 3.88394 3.93786 4.04135 4.09472 4.18641 4.19161 4.33838 4.35607 4.54057 4.66628 4.75765 4.92416 4.96887 4.99378 5.02525 5.10368 5.21948 5.28135 5.30048 5.34679 5.52272 5.64978 5.92662 6.02608 6.25234 6.46322 6.93116 7.08625 7.60808 8.68911 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.011560 B = 0.003254 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.576701 B = 8602.209862 C =10810.852021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.008 4.008 3 Si 1.011 2.989 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.415 4.415 8 H 0.098 0.902 9 O -0.203 6.203 10 C 0.128 3.872 11 C -0.264 4.264 12 C 0.119 3.881 13 F -0.145 7.145 14 C -0.202 4.202 15 C -0.063 4.063 16 C 0.065 3.935 17 N -0.652 5.652 18 C 0.514 3.486 19 O -0.557 6.557 20 C -0.125 4.125 21 C -0.016 4.016 22 C -0.025 4.025 23 C -0.220 4.220 24 C -0.229 4.229 25 C -0.044 4.044 26 O -0.192 6.192 27 H 0.275 0.725 28 H 0.135 0.865 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.419 0.581 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 -12.134 -0.525 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.208 4.208 3 Si 0.831 3.169 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.491 4.491 8 H 0.116 0.884 9 O -0.109 6.109 10 C 0.075 3.925 11 C -0.284 4.284 12 C 0.099 3.901 13 F -0.124 7.124 14 C -0.221 4.221 15 C -0.083 4.083 16 C -0.031 4.031 17 N -0.296 5.296 18 C 0.304 3.696 19 O -0.436 6.436 20 C -0.165 4.165 21 C -0.053 4.053 22 C -0.075 4.075 23 C -0.239 4.239 24 C -0.248 4.248 25 C -0.110 4.110 26 O -0.089 6.089 27 H 0.084 0.916 28 H 0.153 0.847 29 H 0.175 0.825 30 H 0.179 0.821 31 H 0.256 0.744 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.173 0.827 37 H 0.184 0.816 38 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -8.360 -12.677 -0.679 15.201 hybrid contribution 0.292 1.555 0.012 1.583 sum -8.069 -11.122 -0.668 13.756 Atomic orbital electron populations 1.70111 1.07476 1.28940 1.47556 1.26353 0.96833 1.02038 0.95539 0.84625 0.78209 0.75446 0.78622 1.18124 1.19456 1.19183 1.21760 0.92487 0.81082 1.53759 0.88419 1.83871 1.34692 1.11805 1.80498 1.19085 0.90145 0.87152 0.96157 1.20930 0.93426 0.99053 1.15028 1.17479 0.76232 0.94324 1.02108 1.91425 1.29546 1.97357 1.94084 1.20910 0.94663 0.96454 1.10113 1.21012 0.92544 0.97368 0.97377 1.17229 0.83871 0.90990 1.10976 1.43380 1.04401 1.25590 1.56183 1.21210 0.91426 0.80095 0.76909 1.90615 1.67875 1.42888 1.42220 1.21637 0.89109 1.00828 1.04910 1.19734 0.84912 0.97775 1.02904 1.22475 0.95198 0.99599 0.90221 1.21945 0.92774 1.06182 1.02981 1.22186 0.99485 1.04413 0.98716 1.24783 0.82387 1.03612 1.00258 1.84020 1.19870 1.59811 1.45198 0.91587 0.84727 0.82466 0.82133 0.74406 0.86574 0.86982 0.88022 0.89442 0.82671 0.81604 0.74753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.22 13.67 21.61 0.30 -49.92 16 2 C -0.01 -0.41 5.49 84.83 0.47 0.05 16 3 Si 1.01 40.44 29.55 68.60 2.03 42.47 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.53 16 7 C -0.42 -22.34 9.49 67.91 0.64 -21.69 16 8 H 0.10 4.97 5.20 -2.91 -0.02 4.96 16 9 O -0.20 -10.83 9.17 -22.79 -0.21 -11.04 16 10 C 0.13 5.93 6.66 22.69 0.15 6.08 16 11 C -0.26 -11.50 9.14 22.41 0.20 -11.30 16 12 C 0.12 4.55 7.29 22.37 0.16 4.71 16 13 F -0.15 -5.29 17.26 44.97 0.78 -4.51 16 14 C -0.20 -6.90 10.02 22.33 0.22 -6.68 16 15 C -0.06 -2.26 8.72 22.37 0.19 -2.07 16 16 C 0.06 2.60 6.45 38.23 0.25 2.85 16 17 N -0.65 -22.91 5.29 -303.03 -1.60 -24.51 16 18 C 0.51 15.63 7.64 87.66 0.67 16.29 16 19 O -0.56 -19.26 13.15 -3.08 -0.04 -19.30 16 20 C -0.13 -2.76 5.68 29.85 0.17 -2.59 16 21 C -0.02 -0.33 5.04 29.85 0.15 -0.18 16 22 C -0.03 -0.55 6.58 24.83 0.16 -0.38 16 23 C -0.22 -4.48 10.81 22.19 0.24 -4.24 16 24 C -0.23 -3.98 10.91 22.19 0.24 -3.74 16 25 C -0.04 -0.71 12.09 66.97 0.81 0.10 16 26 O -0.19 -4.16 10.65 -2.58 -0.03 -4.19 16 27 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.14 5.99 5.63 -2.91 -0.02 5.97 16 29 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 30 H 0.16 5.44 5.79 -2.91 -0.02 5.42 16 31 H 0.42 14.54 8.34 -92.71 -0.77 13.77 16 32 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.10 2.15 8.10 -2.39 -0.02 2.13 16 35 H 0.09 1.88 8.10 -2.39 -0.02 1.86 16 36 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.24 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -65.73 340.06 6.32 -59.42 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.36 Total: 34.37 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.74 Total: -22.78 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -1.31 Total: -74.43 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.28 Total: -34.53 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.78 Total: -4.51 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -65.73 6.32 -59.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178021222.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.915 kcal (2) G-P(sol) polarization free energy of solvation -65.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds