Wall clock time and date at job start Tue Mar 31 2020 13:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47673 * 2 1 4 4 N 1.46498 * 109.47666 * 179.97438 * 3 2 1 5 5 C 1.36843 * 120.00018 * 264.63750 * 4 3 2 6 6 H 1.08001 * 120.00332 * 128.08848 * 5 4 3 7 7 C 1.38981 * 120.00080 * 308.08567 * 5 4 3 8 8 N 1.31422 * 119.99842 * 3.89873 * 7 5 4 9 9 Si 1.86804 * 120.00194 * 183.89600 * 7 5 4 10 10 H 1.48493 * 109.46755 * 60.00257 * 9 7 5 11 11 H 1.48500 * 109.47133 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47226 * 300.00453 * 9 7 5 13 13 C 1.34774 * 119.99680 * 84.63259 * 4 3 2 14 14 O 1.21814 * 120.00353 * 4.13127 * 13 4 3 15 15 C 1.46149 * 119.99953 * 184.13259 * 13 4 3 16 16 C 1.36949 * 125.16017 * 173.09585 * 15 13 4 17 17 C 1.36542 * 114.74235 * 179.82756 * 16 15 13 18 18 C 1.36976 * 114.73550 * 0.46375 * 17 16 15 19 19 C 1.46875 * 125.16023 * 179.72967 * 18 17 16 20 20 C 1.36452 * 125.97085 * 180.02562 * 19 18 17 21 21 C 1.40684 * 106.71564 * 179.97438 * 20 19 18 22 22 C 1.34909 * 107.08904 * 359.97438 * 21 20 19 23 23 C 1.50703 * 125.62656 * 180.02562 * 22 21 20 24 24 O 1.34261 * 108.74535 * 359.73802 * 22 21 20 25 25 S 1.75828 * 109.67399 * 359.75046 * 18 17 16 26 26 H 1.08990 * 109.47262 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46643 * 300.00424 * 1 2 3 28 28 H 1.08996 * 109.46629 * 59.99647 * 1 2 3 29 29 H 1.09005 * 109.46975 * 239.99937 * 2 1 3 30 30 H 1.09005 * 109.46778 * 120.00123 * 2 1 3 31 31 H 1.09005 * 109.46972 * 59.99935 * 3 2 1 32 32 H 1.09001 * 109.46808 * 300.00312 * 3 2 1 33 33 H 0.96997 * 119.99826 * 179.97438 * 8 7 5 34 34 H 1.07997 * 122.62755 * 0.02562 * 16 15 13 35 35 H 1.08002 * 122.63014 * 180.19007 * 17 16 15 36 36 H 1.07998 * 126.64827 * 359.97438 * 20 19 18 37 37 H 1.07999 * 126.45186 * 180.02562 * 21 20 19 38 38 H 1.08994 * 109.47359 * 90.00026 * 23 22 21 39 39 H 1.09001 * 109.46951 * 210.00540 * 23 22 21 40 40 H 1.09004 * 109.47194 * 329.99655 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1889 1.5534 1.1808 6 1 4.9584 0.8372 1.4285 7 6 3.8930 2.5876 2.0608 8 7 2.9057 3.4135 1.7958 9 14 4.8987 2.8038 3.6201 10 1 6.3219 3.0324 3.2634 11 1 4.3854 3.9703 4.3824 12 1 4.7878 1.5803 4.4542 13 6 4.1794 1.3331 -1.1612 14 8 3.5732 1.3100 -2.2175 15 6 5.6381 1.2421 -1.1537 16 6 6.4184 0.9947 -2.2516 17 6 7.7604 0.9585 -2.0024 18 6 8.1061 1.1657 -0.6933 19 6 9.4790 1.1693 -0.1714 20 6 9.8419 1.3732 1.1281 21 6 11.2456 1.2911 1.1738 22 6 11.6694 1.0436 -0.0828 23 6 13.1055 0.8763 -0.5079 24 8 10.6002 0.9647 -0.8911 25 16 6.6568 1.4260 0.2676 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 2.6989 4.1351 2.4102 34 1 6.0050 0.8434 -3.2378 35 1 8.4917 0.7762 -2.7760 36 1 9.1799 1.5612 1.9604 37 1 11.8668 1.4040 2.0501 38 1 13.3865 -0.1742 -0.4336 39 1 13.2206 1.2111 -1.5389 40 1 13.7483 1.4712 0.1411 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180893286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:07 Heat of formation + Delta-G solvation = -1.558727 kcal Electronic energy + Delta-G solvation = -23929.000674 eV Core-core repulsion = 20415.788566 eV Total energy + Delta-G solvation = -3513.212108 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.31533 -38.79614 -36.72198 -35.07828 -33.11333 -33.07174 -32.21103 -31.51591 -29.34453 -26.78789 -25.84917 -24.68790 -23.24821 -21.74982 -21.09133 -20.36688 -19.78497 -18.72439 -18.16802 -16.43319 -16.06877 -15.82591 -15.23975 -14.84948 -14.67780 -14.30593 -13.98572 -13.90443 -13.44398 -13.26167 -13.16720 -12.76725 -12.70133 -12.66025 -12.12520 -12.05202 -11.87750 -11.73268 -11.66627 -11.43529 -11.28158 -11.10753 -11.02759 -10.57073 -10.48555 -9.95553 -9.84196 -9.80923 -9.14720 -8.93656 -8.79075 -7.85298 -7.62762 -7.21985 -6.68112 -4.60036 0.78977 2.06696 2.08892 2.68722 2.72218 2.98812 3.03506 3.03884 3.27319 3.38139 3.81883 4.26843 4.59709 4.70673 4.74755 4.96715 5.12632 5.29659 5.31985 5.56744 5.72287 5.75356 5.83492 5.88902 5.93912 6.01080 6.11768 6.14452 6.23082 6.42650 6.49032 6.53425 6.59510 6.69330 6.74873 6.87913 6.96779 6.99230 7.07448 7.32372 7.35042 7.77482 8.04327 8.68611 9.22633 9.67560 10.28311 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.004225 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.414893 B = 6625.658772 C = 7976.219625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.137 4.137 3 C 0.121 3.879 4 N -0.435 5.435 5 C -0.345 4.345 6 H 0.098 0.902 7 C 0.068 3.932 8 N -0.837 5.837 9 Si 0.901 3.099 10 H -0.256 1.256 11 H -0.275 1.275 12 H -0.263 1.263 13 C 0.542 3.458 14 O -0.589 6.589 15 C -0.204 4.204 16 C -0.104 4.104 17 C -0.125 4.125 18 C -0.223 4.223 19 C 0.084 3.916 20 C -0.207 4.207 21 C -0.202 4.202 22 C -0.029 4.029 23 C -0.069 4.069 24 O -0.170 6.170 25 S 0.298 5.702 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.280 0.720 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.861 -3.343 1.659 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.175 4.175 3 C -0.002 4.002 4 N -0.152 5.152 5 C -0.481 4.481 6 H 0.114 0.886 7 C -0.145 4.145 8 N -0.469 5.469 9 Si 0.724 3.276 10 H -0.180 1.180 11 H -0.199 1.199 12 H -0.187 1.187 13 C 0.331 3.669 14 O -0.475 6.475 15 C -0.326 4.326 16 C -0.136 4.136 17 C -0.156 4.156 18 C -0.339 4.339 19 C 0.033 3.967 20 C -0.228 4.228 21 C -0.221 4.221 22 C -0.080 4.080 23 C -0.126 4.126 24 O -0.067 6.067 25 S 0.575 5.425 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.158 0.842 35 H 0.145 0.855 36 H 0.167 0.833 37 H 0.165 0.835 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.210 -2.928 2.439 10.898 hybrid contribution 0.733 -0.049 -0.555 0.921 sum 10.943 -2.977 1.884 11.496 Atomic orbital electron populations 1.21645 0.96377 1.00524 1.01474 1.21877 0.94945 0.99341 1.01372 1.21499 0.80722 0.94425 1.03576 1.43217 1.05092 1.62656 1.04279 1.19216 1.18984 1.12398 0.97453 0.88558 1.25685 0.95491 0.93772 0.99512 1.69751 1.25477 1.14773 1.36914 0.86356 0.81117 0.79110 0.80972 1.17994 1.19916 1.18724 1.17350 0.84604 0.80490 0.84500 1.90694 1.68938 1.56806 1.31098 1.24745 0.98399 1.12089 0.97367 1.20193 0.91896 1.02380 0.99142 1.20196 0.95824 1.04484 0.95095 1.24285 0.95785 1.12596 1.01257 1.19589 0.83977 1.03899 0.89284 1.21781 0.95563 1.09198 0.96252 1.21398 0.94956 1.08553 0.97240 1.22442 0.89014 1.07063 0.89492 1.20247 0.86475 1.03035 1.02795 1.84022 1.13943 1.70278 1.38470 1.85539 0.88084 1.62972 1.05910 0.93580 0.92900 0.93082 0.92880 0.92285 0.87584 0.92650 0.90961 0.84163 0.85485 0.83307 0.83537 0.90379 0.90771 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.14 -2.70 6.22 -26.73 -0.17 -2.86 16 3 C 0.12 2.77 4.87 -4.04 -0.02 2.76 16 4 N -0.43 -10.66 2.47 -116.49 -0.29 -10.94 16 5 C -0.34 -8.13 6.70 -15.04 -0.10 -8.24 16 6 H 0.10 2.19 5.44 -32.59 -0.18 2.01 16 7 C 0.07 1.57 5.34 -17.45 -0.09 1.48 16 8 N -0.84 -20.37 11.26 55.50 0.62 -19.75 16 9 Si 0.90 17.61 29.56 -169.99 -5.02 12.59 16 10 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 11 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 12 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 13 C 0.54 13.59 7.55 -13.09 -0.10 13.49 16 14 O -0.59 -15.90 16.47 5.09 0.08 -15.81 16 15 C -0.20 -4.56 6.29 -36.88 -0.23 -4.80 16 16 C -0.10 -2.09 9.88 -40.66 -0.40 -2.49 16 17 C -0.12 -2.31 10.12 -40.65 -0.41 -2.72 16 18 C -0.22 -4.21 6.45 -36.55 -0.24 -4.45 16 19 C 0.08 1.48 7.12 -36.73 -0.26 1.22 16 20 C -0.21 -3.31 10.62 -39.30 -0.42 -3.73 16 21 C -0.20 -2.74 10.78 -39.84 -0.43 -3.17 16 22 C -0.03 -0.39 7.32 -35.49 -0.26 -0.65 16 23 C -0.07 -0.59 10.41 36.01 0.37 -0.21 16 24 O -0.17 -2.81 10.66 4.46 0.05 -2.76 16 25 S 0.30 5.98 18.26 -107.50 -1.96 4.02 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.11 2.52 5.83 -51.93 -0.30 2.22 16 32 H 0.06 1.33 7.53 -51.93 -0.39 0.94 16 33 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 34 H 0.14 2.69 8.04 -52.49 -0.42 2.27 16 35 H 0.13 2.08 8.06 -52.49 -0.42 1.65 16 36 H 0.15 2.25 8.06 -52.49 -0.42 1.82 16 37 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 354.01 15.07 5.33 5.33 Total: -1.00 -28.01 354.01 -8.65 -36.66 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.08 Total: 6.96 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -2.38 Total: -16.30 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.34 Total: -30.69 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.13 Total: -18.58 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.02 Total: 12.59 kcal Atomic # 16 Polarization: 5.98 SS G_CDS: -1.96 Total: 4.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.01 -8.65 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180893286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.100 kcal (2) G-P(sol) polarization free energy of solvation -28.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds