Wall clock time and date at job start Tue Mar 31 2020 13:11:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52992 * 109.47482 * 2 1
4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1
5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1
6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2
7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2
8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3
9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3
10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5
11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5
12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5
13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1
14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2
15 15 O 1.21745 * 120.00191 * 359.97438 * 14 13 3
16 16 C 1.46309 * 119.99599 * 179.97438 * 14 13 3
17 17 C 1.36784 * 125.15045 * 179.97438 * 16 14 13
18 18 C 1.36635 * 114.76002 * 179.97438 * 17 16 14
19 19 C 1.36878 * 114.72466 * 0.02562 * 18 17 16
20 20 C 1.46949 * 125.16814 * 180.02562 * 19 18 17
21 21 C 1.36386 * 125.97230 * 179.97438 * 20 19 18
22 22 C 1.40712 * 106.71682 * 179.97438 * 21 20 19
23 23 C 1.34883 * 107.08874 * 0.02562 * 22 21 20
24 24 C 1.50694 * 125.62956 * 180.02562 * 23 22 21
25 25 O 1.34262 * 108.73273 * 359.75381 * 23 22 21
26 26 S 1.75833 * 125.15973 * 359.69309 * 16 14 13
27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3
28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3
29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3
30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3
31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3
32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5
33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2
34 34 H 1.07997 * 122.62442 * 359.97438 * 17 16 14
35 35 H 1.07996 * 122.63488 * 179.97438 * 18 17 16
36 36 H 1.07995 * 126.63695 * 359.97438 * 21 20 19
37 37 H 1.07999 * 126.45798 * 180.02562 * 22 21 20
38 38 H 1.09001 * 109.46963 * 90.00355 * 24 23 22
39 39 H 1.09002 * 109.47274 * 209.99845 * 24 23 22
40 40 H 1.09000 * 109.47468 * 329.99923 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5419 1.4443 -0.1238
6 1 4.1473 1.8887 0.6523
7 6 4.1433 0.8784 -1.2280
8 7 3.4062 0.3374 -2.1734
9 14 6.0050 0.8801 -1.3812
10 1 6.5988 1.5453 -0.1938
11 1 6.4963 -0.5190 -1.4627
12 1 6.3999 1.6157 -2.6093
13 7 1.6525 2.0974 1.2518
14 6 0.4352 2.6643 1.3670
15 8 -0.3422 2.6326 0.4306
16 6 0.0480 3.3179 2.6174
17 6 -1.1557 3.9250 2.8488
18 6 -1.2922 4.4687 4.0949
19 6 -0.2016 4.3175 4.9081
20 6 -0.1003 4.8108 6.2886
21 6 0.9769 4.6691 7.1129
22 6 0.6391 5.2883 8.3305
23 6 -0.6126 5.7725 8.1950
24 6 -1.3852 6.5167 9.2533
25 8 -1.0540 5.4869 6.9596
26 16 1.0568 3.4361 4.0527
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 -1.0277 -0.0005
30 1 1.8933 -0.5139 0.8900
31 1 1.8934 -0.5138 -0.8899
32 1 3.8292 -0.0604 -2.9503
33 1 2.2720 2.1231 1.9978
34 1 -1.9372 3.9710 2.1048
35 1 -2.1897 4.9783 4.4128
36 1 1.9088 4.1770 6.8769
37 1 1.2641 5.3620 9.2082
38 1 -1.1901 7.5852 9.1616
39 1 -2.4513 6.3297 9.1239
40 1 -1.0733 6.1737 10.2398
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000183855326.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:11:28
Heat of formation + Delta-G solvation = 0.439405 kcal
Electronic energy + Delta-G solvation = -23228.827415 eV
Core-core repulsion = 19715.701952 eV
Total energy + Delta-G solvation = -3513.125463 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-42.77653 -39.23266 -37.34116 -35.05810 -33.49557 -32.76505 -32.42227 -31.11227
-29.78383 -27.43824 -26.37125 -24.24908 -23.06108 -22.21183 -21.18892 -20.82726
-19.54555 -19.13203 -18.45903 -16.51544 -16.50834 -16.33125 -15.55555 -15.34411
-14.93248 -14.68300 -14.22779 -13.91660 -13.58662 -13.50582 -13.19316 -13.15877
-12.91352 -12.77346 -12.58498 -12.39971 -12.01982 -11.97065 -11.55635 -11.28506
-11.06250 -10.96180 -10.87472 -10.34452 -10.26476 -10.21803 -9.68094 -9.49024
-9.29743 -9.07986 -8.66959 -8.54009 -7.99818 -7.79964 -6.15454 -4.25067
0.10126 1.15063 1.56986 1.75505 2.21593 2.73294 2.75883 3.22315
3.30354 3.32953 3.75535 3.95128 4.24635 4.34707 4.53521 4.71095
4.95086 5.06056 5.16023 5.20521 5.28650 5.32461 5.38540 5.51353
5.66194 5.72574 5.94183 6.15733 6.22490 6.29489 6.37352 6.43965
6.63259 6.83705 7.01645 7.15834 7.28972 7.36184 7.57633 7.67575
7.85107 8.13355 8.53646 8.71255 8.97532 9.41890 10.89984
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.021521 B = 0.002818 C = 0.002568
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1300.750248 B = 9933.548997 C =10900.102201
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.128 4.128
3 C 0.270 3.730
4 H 0.053 0.947
5 C -0.535 4.535
6 H 0.062 0.938
7 C 0.067 3.933
8 N -0.881 5.881
9 Si 0.902 3.098
10 H -0.272 1.272
11 H -0.282 1.282
12 H -0.282 1.282
13 N -0.700 5.700
14 C 0.571 3.429
15 O -0.531 6.531
16 C -0.227 4.227
17 C -0.074 4.074
18 C -0.119 4.119
19 C -0.134 4.134
20 C 0.060 3.940
21 C -0.189 4.189
22 C -0.205 4.205
23 C -0.010 4.010
24 C -0.073 4.073
25 O -0.164 6.164
26 S 0.210 5.790
27 H 0.050 0.950
28 H 0.038 0.962
29 H 0.024 0.976
30 H 0.032 0.968
31 H 0.101 0.899
32 H 0.264 0.736
33 H 0.385 0.615
34 H 0.156 0.844
35 H 0.148 0.852
36 H 0.152 0.848
37 H 0.152 0.848
38 H 0.082 0.918
39 H 0.077 0.923
40 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.016 9.292 20.841 23.873
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.167 4.167
3 C 0.169 3.831
4 H 0.071 0.929
5 C -0.573 4.573
6 H 0.080 0.920
7 C -0.136 4.136
8 N -0.518 5.518
9 Si 0.729 3.271
10 H -0.197 1.197
11 H -0.208 1.208
12 H -0.208 1.208
13 N -0.347 5.347
14 C 0.355 3.645
15 O -0.411 6.411
16 C -0.348 4.348
17 C -0.106 4.106
18 C -0.150 4.150
19 C -0.252 4.252
20 C 0.008 3.992
21 C -0.209 4.209
22 C -0.224 4.224
23 C -0.061 4.061
24 C -0.130 4.130
25 O -0.061 6.061
26 S 0.479 5.521
27 H 0.070 0.930
28 H 0.057 0.943
29 H 0.043 0.957
30 H 0.051 0.949
31 H 0.119 0.881
32 H 0.075 0.925
33 H 0.218 0.782
34 H 0.173 0.827
35 H 0.165 0.835
36 H 0.170 0.830
37 H 0.170 0.830
38 H 0.101 0.899
39 H 0.096 0.904
40 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -6.310 8.700 20.159 22.845
hybrid contribution 0.049 0.400 -0.015 0.404
sum -6.261 9.100 20.144 22.973
Atomic orbital electron populations
1.21854 0.98288 0.98221 1.01254 1.21944 0.92684 0.99577 1.02467
1.18889 0.94492 0.89295 0.80468 0.92919 1.21240 0.90501 1.39177
1.06427 0.91986 1.24883 0.98700 0.94715 0.95322 1.69902 1.35090
1.37534 1.09299 0.86390 0.84735 0.77807 0.78171 1.19691 1.20829
1.20845 1.46484 1.13882 1.55527 1.18800 1.16859 0.83260 0.79178
0.85226 1.90823 1.51505 1.60059 1.38703 1.25137 0.99876 1.10459
0.99345 1.20438 0.96792 0.96438 0.96932 1.20470 0.98827 1.02602
0.93123 1.22325 1.00301 1.08565 0.94057 1.19196 0.88398 1.00459
0.91134 1.21842 0.99620 1.05598 0.93864 1.21466 0.96369 1.04723
0.99881 1.22590 0.95460 1.03281 0.84799 1.20330 0.99802 0.99169
0.93676 1.84017 1.40534 1.58097 1.23451 1.84037 1.14852 1.50115
1.03116 0.93044 0.94333 0.95676 0.94919 0.88061 0.92546 0.78218
0.82671 0.83474 0.82998 0.83036 0.89945 0.90438 0.89177
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16
2 C -0.13 -3.09 5.45 -26.74 -0.15 -3.24 16
3 C 0.27 6.76 2.24 -69.08 -0.15 6.60 16
4 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16
5 C -0.54 -14.00 8.73 -34.44 -0.30 -14.30 16
6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16
7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16
8 N -0.88 -24.39 11.30 55.43 0.63 -23.76 16
9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16
10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16
12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
13 N -0.70 -14.76 5.02 -56.36 -0.28 -15.04 16
14 C 0.57 11.67 6.34 -13.02 -0.08 11.58 16
15 O -0.53 -12.43 13.94 5.15 0.07 -12.36 16
16 C -0.23 -3.73 6.43 -36.86 -0.24 -3.97 16
17 C -0.07 -1.08 9.87 -40.69 -0.40 -1.48 16
18 C -0.12 -1.52 10.12 -40.65 -0.41 -1.93 16
19 C -0.13 -1.75 6.45 -36.55 -0.24 -1.99 16
20 C 0.06 0.75 7.12 -36.72 -0.26 0.48 16
21 C -0.19 -2.08 10.62 -39.31 -0.42 -2.50 16
22 C -0.21 -1.93 10.78 -39.84 -0.43 -2.36 16
23 C -0.01 -0.09 7.32 -35.50 -0.26 -0.35 16
24 C -0.07 -0.38 10.41 36.00 0.37 -0.01 16
25 O -0.16 -1.97 10.66 4.47 0.05 -1.92 16
26 S 0.21 2.81 22.05 -107.50 -2.37 0.44 16
27 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16
28 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16
29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16
30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
31 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16
32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16
33 H 0.39 7.22 7.62 -40.82 -0.31 6.91 16
34 H 0.16 2.16 8.03 -52.49 -0.42 1.74 16
35 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16
36 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16
37 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16
38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
39 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
40 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16
LS Contribution 353.08 15.07 5.32 5.32
Total: -1.00 -30.49 353.08 -9.41 -39.89
By element:
Atomic # 1 Polarization: 11.65 SS G_CDS: -5.06 Total: 6.59 kcal
Atomic # 6 Polarization: -11.82 SS G_CDS: -2.74 Total: -14.56 kcal
Atomic # 7 Polarization: -39.15 SS G_CDS: 0.34 Total: -38.81 kcal
Atomic # 8 Polarization: -14.40 SS G_CDS: 0.12 Total: -14.28 kcal
Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal
Atomic # 16 Polarization: 2.81 SS G_CDS: -2.37 Total: 0.44 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -30.49 -9.41 -39.89 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183855326.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 40.333 kcal
(2) G-P(sol) polarization free energy of solvation -30.486 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.846 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.893 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.439 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds