Wall clock time and date at job start Tue Mar 31 2020 13:11:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52992 * 109.47482 * 2 1
4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1
5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1
6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2
7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2
8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3
9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3
10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5
11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5
12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5
13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1
14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2
15 15 O 1.21745 * 120.00191 * 359.97438 * 14 13 3
16 16 C 1.46309 * 119.99599 * 179.97438 * 14 13 3
17 17 C 1.36784 * 125.15045 * 179.97438 * 16 14 13
18 18 C 1.36635 * 114.76002 * 179.97438 * 17 16 14
19 19 C 1.36878 * 114.72466 * 0.02562 * 18 17 16
20 20 C 1.46949 * 125.16814 * 180.02562 * 19 18 17
21 21 C 1.36386 * 125.97230 * 179.97438 * 20 19 18
22 22 C 1.40712 * 106.71682 * 179.97438 * 21 20 19
23 23 C 1.34883 * 107.08874 * 0.02562 * 22 21 20
24 24 C 1.50694 * 125.62956 * 180.02562 * 23 22 21
25 25 O 1.34262 * 108.73273 * 359.75381 * 23 22 21
26 26 S 1.75833 * 125.15973 * 359.69309 * 16 14 13
27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3
28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3
29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3
30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3
31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3
32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5
33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2
34 34 H 1.07997 * 122.62442 * 359.97438 * 17 16 14
35 35 H 1.07996 * 122.63488 * 179.97438 * 18 17 16
36 36 H 1.07995 * 126.63695 * 359.97438 * 21 20 19
37 37 H 1.07999 * 126.45798 * 180.02562 * 22 21 20
38 38 H 1.09001 * 109.46963 * 90.00355 * 24 23 22
39 39 H 1.09002 * 109.47274 * 209.99845 * 24 23 22
40 40 H 1.09000 * 109.47468 * 329.99923 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5419 1.4443 -0.1238
6 1 4.1473 1.8887 0.6523
7 6 4.1433 0.8784 -1.2280
8 7 3.4062 0.3374 -2.1734
9 14 6.0050 0.8801 -1.3812
10 1 6.5988 1.5453 -0.1938
11 1 6.4963 -0.5190 -1.4627
12 1 6.3999 1.6157 -2.6093
13 7 1.6525 2.0974 1.2518
14 6 0.4352 2.6643 1.3670
15 8 -0.3422 2.6326 0.4306
16 6 0.0480 3.3179 2.6174
17 6 -1.1557 3.9250 2.8488
18 6 -1.2922 4.4687 4.0949
19 6 -0.2016 4.3175 4.9081
20 6 -0.1003 4.8108 6.2886
21 6 0.9769 4.6691 7.1129
22 6 0.6391 5.2883 8.3305
23 6 -0.6126 5.7725 8.1950
24 6 -1.3852 6.5167 9.2533
25 8 -1.0540 5.4869 6.9596
26 16 1.0568 3.4361 4.0527
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 0.5138 0.8900
29 1 -0.3634 -1.0277 -0.0005
30 1 1.8933 -0.5139 0.8900
31 1 1.8934 -0.5138 -0.8899
32 1 3.8292 -0.0604 -2.9503
33 1 2.2720 2.1231 1.9978
34 1 -1.9372 3.9710 2.1048
35 1 -2.1897 4.9783 4.4128
36 1 1.9088 4.1770 6.8769
37 1 1.2641 5.3620 9.2082
38 1 -1.1901 7.5852 9.1616
39 1 -2.4513 6.3297 9.1239
40 1 -1.0733 6.1737 10.2398
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000183855326.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:11:28
Heat of formation + Delta-G solvation = -16.803225 kcal
Electronic energy + Delta-G solvation = -23229.575112 eV
Core-core repulsion = 19715.701952 eV
Total energy + Delta-G solvation = -3513.873159 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.103 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-43.57792 -40.84507 -38.53843 -36.89836 -34.39589 -34.26060 -33.56139 -32.86690
-30.81030 -29.12446 -27.57231 -25.41613 -24.78874 -23.16518 -22.59037 -21.68787
-21.39043 -20.28488 -19.83933 -18.18706 -17.60317 -17.32130 -16.99784 -16.81019
-16.37041 -16.21868 -15.68249 -15.07496 -14.72738 -14.59665 -14.36898 -14.06080
-13.92393 -13.87844 -13.65634 -13.53733 -13.41147 -13.27136 -13.19305 -12.88557
-12.71643 -12.68434 -12.18745 -12.13615 -12.08533 -11.61896 -11.12522 -11.08772
-10.97989 -10.56018 -10.46029 -9.79224 -9.68917 -8.78474 -8.17738 -6.35268
-0.99066 0.08732 0.63163 0.63356 1.32946 1.43992 1.45254 1.57049
1.78375 1.94762 2.24004 2.30540 2.52533 3.11916 3.40901 3.85306
3.89987 3.95839 4.15939 4.32082 4.47269 4.55152 4.57188 4.62764
4.72638 4.74102 4.77321 4.89196 4.95206 5.00900 5.07701 5.19997
5.20731 5.25216 5.40530 5.47772 5.53471 5.56985 5.75173 5.86022
6.04495 6.13122 6.70036 6.81685 7.26010 7.41650 8.88011
Molecular weight = 319.10amu
Principal moments of inertia in cm(-1)
A = 0.021521 B = 0.002818 C = 0.002568
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1300.750248 B = 9933.548997 C =10900.102201
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.121 4.121
3 C 0.277 3.723
4 H 0.004 0.996
5 C -0.549 4.549
6 H 0.070 0.930
7 C 0.017 3.983
8 N -0.913 5.913
9 Si 0.971 3.029
10 H -0.261 1.261
11 H -0.277 1.277
12 H -0.284 1.284
13 N -0.700 5.700
14 C 0.573 3.427
15 O -0.572 6.572
16 C -0.275 4.275
17 C -0.055 4.055
18 C -0.131 4.131
19 C -0.115 4.115
20 C 0.020 3.980
21 C -0.181 4.181
22 C -0.217 4.217
23 C -0.003 4.003
24 C -0.075 4.075
25 O -0.179 6.179
26 S 0.245 5.755
27 H 0.028 0.972
28 H 0.040 0.960
29 H 0.048 0.952
30 H 0.041 0.959
31 H 0.076 0.924
32 H 0.266 0.734
33 H 0.397 0.603
34 H 0.155 0.845
35 H 0.169 0.831
36 H 0.163 0.837
37 H 0.180 0.820
38 H 0.097 0.903
39 H 0.082 0.918
40 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.343 10.286 24.386 27.216
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.160 4.160
3 C 0.175 3.825
4 H 0.022 0.978
5 C -0.588 4.588
6 H 0.089 0.911
7 C -0.183 4.183
8 N -0.551 5.551
9 Si 0.795 3.205
10 H -0.185 1.185
11 H -0.203 1.203
12 H -0.210 1.210
13 N -0.348 5.348
14 C 0.360 3.640
15 O -0.454 6.454
16 C -0.396 4.396
17 C -0.088 4.088
18 C -0.161 4.161
19 C -0.234 4.234
20 C -0.031 4.031
21 C -0.202 4.202
22 C -0.236 4.236
23 C -0.055 4.055
24 C -0.131 4.131
25 O -0.076 6.076
26 S 0.514 5.486
27 H 0.047 0.953
28 H 0.059 0.941
29 H 0.067 0.933
30 H 0.060 0.940
31 H 0.095 0.905
32 H 0.075 0.925
33 H 0.232 0.768
34 H 0.173 0.827
35 H 0.186 0.814
36 H 0.180 0.820
37 H 0.197 0.803
38 H 0.115 0.885
39 H 0.101 0.899
40 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -5.628 9.699 23.735 26.250
hybrid contribution -0.221 0.223 -0.876 0.931
sum -5.849 9.922 22.858 25.596
Atomic orbital electron populations
1.21694 0.96966 0.99343 1.00251 1.21795 0.93790 0.98877 1.01545
1.18493 0.94015 0.89340 0.80697 0.97778 1.21556 0.91125 1.39211
1.06867 0.91149 1.25758 1.03380 0.94250 0.94919 1.70047 1.37028
1.38192 1.09813 0.85317 0.79012 0.77907 0.78237 1.18467 1.20303
1.20963 1.46221 1.14746 1.55891 1.17950 1.17266 0.82280 0.78292
0.86177 1.90787 1.52418 1.61528 1.40671 1.24628 1.01938 1.13674
0.99379 1.20572 0.95945 0.94817 0.97505 1.20568 0.99842 1.03386
0.92314 1.22578 0.99859 1.06506 0.94497 1.19186 0.89579 1.03060
0.91284 1.22200 0.99414 1.04338 0.94259 1.21853 0.96871 1.04607
1.00254 1.23510 0.95876 1.01767 0.84301 1.20582 0.99702 0.99545
0.93255 1.84014 1.40819 1.58279 1.24520 1.83776 1.13882 1.49780
1.01133 0.95251 0.94101 0.93318 0.94005 0.90541 0.92482 0.76823
0.82695 0.81375 0.81966 0.80311 0.88461 0.89876 0.86827
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.75 8.51 71.98 0.61 -5.14 16
2 C -0.12 -6.04 5.45 30.59 0.17 -5.88 16
3 C 0.28 14.46 2.24 44.24 0.10 14.56 16
4 H 0.00 0.27 7.58 -2.39 -0.02 0.25 16
5 C -0.55 -29.25 8.73 25.60 0.22 -29.02 16
6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16
7 C 0.02 0.93 5.29 84.65 0.45 1.38 16
8 N -0.91 -52.00 11.30 21.45 0.24 -51.76 16
9 Si 0.97 41.99 29.54 68.60 2.03 44.02 16
10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16
11 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16
12 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16
13 N -0.70 -30.42 5.02 -450.41 -2.26 -32.68 16
14 C 0.57 24.28 6.34 86.34 0.55 24.83 16
15 O -0.57 -28.17 13.94 -4.49 -0.06 -28.23 16
16 C -0.28 -9.16 6.43 24.03 0.15 -9.00 16
17 C -0.06 -1.61 9.87 21.55 0.21 -1.40 16
18 C -0.13 -3.21 10.12 21.58 0.22 -2.99 16
19 C -0.12 -2.86 6.45 24.23 0.16 -2.70 16
20 C 0.02 0.46 7.12 24.12 0.17 0.63 16
21 C -0.18 -3.55 10.62 22.44 0.24 -3.32 16
22 C -0.22 -3.37 10.78 22.10 0.24 -3.13 16
23 C 0.00 -0.05 7.32 24.91 0.18 0.13 16
24 C -0.07 -0.50 10.41 71.23 0.74 0.24 16
25 O -0.18 -3.90 10.66 -6.93 -0.07 -3.97 16
26 S 0.25 6.32 22.05 -56.49 -1.25 5.08 16
27 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16
28 H 0.04 1.83 5.64 -2.39 -0.01 1.82 16
29 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16
30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16
31 H 0.08 4.22 5.95 -2.39 -0.01 4.21 16
32 H 0.27 14.30 8.31 -92.71 -0.77 13.52 16
33 H 0.40 15.06 7.62 -92.71 -0.71 14.35 16
34 H 0.16 4.40 8.03 -2.91 -0.02 4.38 16
35 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16
36 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16
37 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16
38 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16
39 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16
40 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16
Total: -1.00 -68.18 353.08 3.40 -64.78
By element:
Atomic # 1 Polarization: 23.22 SS G_CDS: 0.37 Total: 23.58 kcal
Atomic # 6 Polarization: -25.23 SS G_CDS: 4.41 Total: -20.82 kcal
Atomic # 7 Polarization: -82.42 SS G_CDS: -2.02 Total: -84.43 kcal
Atomic # 8 Polarization: -32.07 SS G_CDS: -0.14 Total: -32.20 kcal
Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal
Atomic # 16 Polarization: 6.32 SS G_CDS: -1.25 Total: 5.08 kcal
Total: -68.18 3.40 -64.78 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183855326.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.972 kcal
(2) G-P(sol) polarization free energy of solvation -68.180 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.208 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.776 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.803 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds