Wall clock time and date at job start Tue Mar 31 2020 13:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21568 * 120.00022 * 0.02562 * 14 13 3 16 16 C 1.47730 * 119.99903 * 180.02562 * 14 13 3 17 17 C 1.39672 * 120.11936 * 359.97438 * 16 14 13 18 18 C 1.37810 * 119.88161 * 179.97438 * 17 16 14 19 19 C 1.38684 * 120.11823 * 0.02562 * 18 17 16 20 20 F 1.35101 * 119.88184 * 180.02562 * 19 18 17 21 21 C 1.38637 * 120.23599 * 359.97438 * 19 18 17 22 22 C 1.37856 * 120.11891 * 359.78723 * 21 19 18 23 23 C 1.50705 * 120.05906 * 180.22983 * 22 21 19 24 24 F 1.39906 * 109.47043 * 0.23749 * 23 22 21 25 25 F 1.39898 * 109.46924 * 120.23278 * 23 22 21 26 26 F 1.39899 * 109.47250 * 240.23578 * 23 22 21 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.08001 * 120.05690 * 359.97438 * 17 16 14 35 35 H 1.07998 * 119.94277 * 179.97438 * 18 17 16 36 36 H 1.08003 * 119.93546 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3410 2.6325 -0.4318 16 6 0.0442 3.3245 -2.6293 17 6 0.9343 3.3630 -3.7050 18 6 0.5643 3.9795 -4.8806 19 6 -0.6891 4.5616 -4.9966 20 9 -1.0471 5.1644 -6.1515 21 6 -1.5764 4.5263 -3.9320 22 6 -1.2183 3.9078 -2.7532 23 6 -2.1859 3.8656 -1.5985 24 9 -3.3734 4.5103 -1.9614 25 9 -2.4602 2.5341 -1.2684 26 9 -1.6224 4.5134 -0.4940 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 2.2720 2.1232 -1.9977 34 1 1.9108 2.9103 -3.6156 35 1 1.2519 4.0102 -5.7128 36 1 -2.5515 4.9808 -4.0277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183896873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:58 Heat of formation + Delta-G solvation = -205.110197 kcal Electronic energy + Delta-G solvation = -27779.973219 eV Core-core repulsion = 23149.864540 eV Total energy + Delta-G solvation = -4630.108679 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.78694 -49.29258 -47.37630 -47.07607 -40.13965 -38.21803 -35.21445 -32.85928 -32.11468 -31.55525 -30.34213 -27.18008 -26.10332 -24.01946 -23.10748 -22.26548 -20.71366 -19.54513 -18.90458 -18.26071 -18.05121 -17.71237 -16.60823 -16.38045 -16.02240 -15.97858 -15.33888 -15.01320 -14.83618 -14.43232 -14.05552 -14.03609 -13.63151 -13.50788 -13.48852 -13.39149 -13.26236 -12.91507 -12.75133 -12.68298 -12.39744 -11.96120 -11.55217 -11.35955 -11.29556 -11.01838 -10.88691 -10.37249 -10.23446 -9.71312 -9.67615 -9.30434 -9.11730 -9.09620 -8.55649 -7.95581 -6.17530 -4.27743 0.31292 0.62672 2.71181 2.75895 3.21230 3.28156 3.29231 3.67252 3.70905 3.74690 3.97636 4.16178 4.30204 4.53130 4.61598 4.72871 4.77152 4.98988 5.14158 5.21857 5.46762 5.53633 5.71552 5.81673 6.28594 6.37604 6.44257 6.63387 7.00549 7.15472 7.25604 7.34750 7.54750 7.63726 7.82731 8.11434 8.47394 8.66693 8.91867 9.39272 10.87702 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.004275 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.083693 B = 6548.247295 C = 7580.780140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.054 0.946 5 C -0.537 4.537 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.692 5.692 14 C 0.530 3.470 15 O -0.521 6.521 16 C -0.083 4.083 17 C -0.063 4.063 18 C -0.128 4.128 19 C 0.111 3.889 20 F -0.131 7.131 21 C -0.118 4.118 22 C -0.108 4.108 23 C 0.519 3.481 24 F -0.190 7.190 25 F -0.158 7.158 26 F -0.158 7.158 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.023 0.977 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.140 6.695 -13.998 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.072 0.928 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.340 5.340 14 C 0.314 3.686 15 O -0.399 6.399 16 C -0.086 4.086 17 C -0.082 4.082 18 C -0.147 4.147 19 C 0.092 3.908 20 F -0.109 7.109 21 C -0.137 4.137 22 C -0.111 4.111 23 C 0.465 3.535 24 F -0.171 7.171 25 F -0.139 7.139 26 F -0.139 7.139 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.686 6.556 -13.098 16.541 hybrid contribution 1.106 0.099 -0.390 1.177 sum -6.580 6.656 -13.487 16.417 Atomic orbital electron populations 1.21841 0.98091 0.98181 1.01373 1.21941 0.92764 0.99514 1.02390 1.18892 0.94393 0.89295 0.80472 0.92843 1.21182 0.90482 1.39402 1.06478 0.92072 1.24872 0.98631 0.94691 0.95342 1.69890 1.35200 1.37339 1.09258 0.86449 0.84755 0.77698 0.78200 1.20546 1.21053 1.19861 1.46435 1.13761 1.54963 1.18862 1.17952 0.83864 0.80322 0.86435 1.90867 1.50706 1.59055 1.39262 1.20332 0.93137 0.98658 0.96520 1.21300 0.99630 0.96396 0.90831 1.21307 0.95290 0.98490 0.99629 1.17635 0.94093 0.96746 0.82363 1.91542 1.92082 1.80901 1.46371 1.20889 1.01181 1.00362 0.91270 1.19926 0.94881 1.01962 0.94330 1.17732 0.78389 0.74974 0.82407 1.93133 1.50009 1.82245 1.91736 1.93262 1.93830 1.33690 1.93096 1.93266 1.84497 1.81224 1.54893 0.94251 0.93003 0.95821 0.88152 0.94996 0.92467 0.77885 0.83082 0.83236 0.82799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.69 16 2 C -0.13 -2.98 5.45 -26.74 -0.15 -3.12 16 3 C 0.27 6.46 2.24 -69.09 -0.15 6.31 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.54 -13.49 8.73 -34.44 -0.30 -13.79 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.94 11.29 55.43 0.63 -23.31 16 9 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 13 N -0.69 -13.30 4.97 -55.92 -0.28 -13.58 16 14 C 0.53 9.95 6.14 -12.38 -0.08 9.88 16 15 O -0.52 -11.36 8.43 5.31 0.04 -11.32 16 16 C -0.08 -1.21 5.85 -104.96 -0.61 -1.82 16 17 C -0.06 -0.68 9.54 -39.20 -0.37 -1.06 16 18 C -0.13 -1.17 10.01 -39.57 -0.40 -1.57 16 19 C 0.11 1.13 7.31 -39.27 -0.29 0.85 16 20 F -0.13 -1.31 17.26 2.25 0.04 -1.27 16 21 C -0.12 -1.32 9.40 -39.57 -0.37 -1.70 16 22 C -0.11 -1.52 5.40 -104.24 -0.56 -2.08 16 23 C 0.52 8.31 2.78 36.01 0.10 8.41 16 24 F -0.19 -2.64 15.97 2.25 0.04 -2.60 16 25 F -0.16 -2.85 15.02 2.25 0.03 -2.82 16 26 F -0.16 -2.89 15.00 2.25 0.03 -2.85 16 27 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 28 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.39 6.21 6.57 -40.82 -0.27 5.95 16 34 H 0.15 1.35 6.40 -52.49 -0.34 1.01 16 35 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.15 1.45 7.15 -52.48 -0.38 1.08 16 LS Contribution 312.98 15.07 4.72 4.72 Total: -1.00 -28.92 312.98 -5.92 -34.84 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.19 Total: 4.00 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.96 Total: -0.71 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.35 Total: -36.89 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.04 Total: -11.32 kcal Atomic # 9 Polarization: -9.69 SS G_CDS: 0.14 Total: -9.55 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.92 -5.92 -34.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183896873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.268 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds