Wall clock time and date at job start Tue Mar 31 2020 13:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21568 * 120.00022 * 0.02562 * 14 13 3 16 16 C 1.47730 * 119.99903 * 180.02562 * 14 13 3 17 17 C 1.39672 * 120.11936 * 359.97438 * 16 14 13 18 18 C 1.37810 * 119.88161 * 179.97438 * 17 16 14 19 19 C 1.38684 * 120.11823 * 0.02562 * 18 17 16 20 20 F 1.35101 * 119.88184 * 180.02562 * 19 18 17 21 21 C 1.38637 * 120.23599 * 359.97438 * 19 18 17 22 22 C 1.37856 * 120.11891 * 359.78723 * 21 19 18 23 23 C 1.50705 * 120.05906 * 180.22983 * 22 21 19 24 24 F 1.39906 * 109.47043 * 0.23749 * 23 22 21 25 25 F 1.39898 * 109.46924 * 120.23278 * 23 22 21 26 26 F 1.39899 * 109.47250 * 240.23578 * 23 22 21 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 34 34 H 1.08001 * 120.05690 * 359.97438 * 17 16 14 35 35 H 1.07998 * 119.94277 * 179.97438 * 18 17 16 36 36 H 1.08003 * 119.93546 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3410 2.6325 -0.4318 16 6 0.0442 3.3245 -2.6293 17 6 0.9343 3.3630 -3.7050 18 6 0.5643 3.9795 -4.8806 19 6 -0.6891 4.5616 -4.9966 20 9 -1.0471 5.1644 -6.1515 21 6 -1.5764 4.5263 -3.9320 22 6 -1.2183 3.9078 -2.7532 23 6 -2.1859 3.8656 -1.5985 24 9 -3.3734 4.5103 -1.9614 25 9 -2.4602 2.5341 -1.2684 26 9 -1.6224 4.5134 -0.4940 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 2.2720 2.1232 -1.9977 34 1 1.9108 2.9103 -3.6156 35 1 1.2519 4.0102 -5.7128 36 1 -2.5515 4.9808 -4.0277 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183896873.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:57 Heat of formation + Delta-G solvation = -221.675753 kcal Electronic energy + Delta-G solvation = -27780.691555 eV Core-core repulsion = 23149.864540 eV Total energy + Delta-G solvation = -4630.827015 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.05035 -50.09996 -48.61688 -48.42863 -41.37412 -39.47298 -36.95524 -34.48312 -33.30070 -33.02476 -31.66231 -28.95949 -27.30559 -25.32426 -24.65904 -23.41474 -22.17193 -21.25583 -20.06569 -19.42582 -19.34642 -19.12983 -17.74366 -17.67214 -17.33783 -16.94264 -16.79898 -16.36297 -16.25975 -15.85096 -15.36421 -15.28971 -14.96482 -14.83060 -14.63485 -14.62495 -14.57651 -14.34260 -14.13785 -13.98903 -13.55441 -13.46593 -13.23792 -13.14648 -12.85486 -12.67241 -12.31784 -12.14495 -12.04049 -11.55810 -11.03811 -10.84035 -10.57289 -10.50671 -10.07644 -9.63122 -8.13588 -6.30875 -0.67871 -0.23592 1.47736 1.48242 1.58255 1.60910 1.67911 2.28157 2.47336 2.51193 2.62922 2.93972 3.16766 3.18667 3.46096 3.62423 3.68647 3.78688 3.98316 4.22300 4.51152 4.55862 4.59647 4.70692 4.78151 4.85438 4.91262 5.09445 5.29287 5.45451 5.46852 5.55160 5.61707 5.80896 5.91939 6.18162 6.76136 6.88217 7.33239 7.49366 8.91753 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.004275 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.083693 B = 6548.247295 C = 7580.780140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.001 0.999 5 C -0.546 4.546 6 H 0.076 0.924 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.969 3.031 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.257 1.257 13 N -0.690 5.690 14 C 0.527 3.473 15 O -0.559 6.559 16 C -0.106 4.106 17 C -0.051 4.051 18 C -0.107 4.107 19 C 0.123 3.877 20 F -0.124 7.124 21 C -0.114 4.114 22 C -0.119 4.119 23 C 0.513 3.487 24 F -0.179 7.179 25 F -0.175 7.175 26 F -0.178 7.178 27 H 0.044 0.956 28 H 0.024 0.976 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.405 0.595 34 H 0.173 0.827 35 H 0.191 0.809 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.822 7.387 -17.443 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.019 0.981 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.181 1.181 13 N -0.339 5.339 14 C 0.313 3.687 15 O -0.439 6.439 16 C -0.110 4.110 17 C -0.069 4.069 18 C -0.126 4.126 19 C 0.103 3.897 20 F -0.103 7.103 21 C -0.133 4.133 22 C -0.122 4.122 23 C 0.458 3.542 24 F -0.160 7.160 25 F -0.157 7.157 26 F -0.159 7.159 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.191 0.809 35 H 0.208 0.792 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -6.367 7.267 -16.597 19.204 hybrid contribution 0.599 -0.036 0.606 0.852 sum -5.768 7.231 -15.991 18.474 Atomic orbital electron populations 1.21666 0.97088 0.98946 1.00253 1.21785 0.93527 0.99120 1.01454 1.18413 0.93808 0.89111 0.80972 0.98130 1.21561 0.91175 1.38864 1.06785 0.90568 1.25747 1.03135 0.94416 0.95086 1.70055 1.37058 1.38393 1.09844 0.85391 0.79307 0.77196 0.78710 1.20695 1.21331 1.18082 1.46092 1.14693 1.55204 1.17926 1.18555 0.82951 0.79542 0.87622 1.90850 1.51668 1.60235 1.41191 1.19981 0.94546 1.00765 0.95709 1.21515 0.99610 0.95784 0.90039 1.21668 0.95134 0.96023 0.99727 1.17690 0.94147 0.95905 0.81950 1.91573 1.92079 1.80681 1.45918 1.20997 1.02187 0.99619 0.90463 1.19771 0.94324 1.03641 0.94420 1.18074 0.79248 0.74117 0.82730 1.93140 1.49495 1.81898 1.91513 1.93214 1.94024 1.35063 1.93372 1.93215 1.84902 1.81502 1.56299 0.93745 0.95711 0.93936 0.91026 0.93734 0.92702 0.75841 0.80931 0.79205 0.81299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.51 71.98 0.61 -4.88 16 2 C -0.12 -5.74 5.45 30.59 0.17 -5.57 16 3 C 0.28 13.75 2.24 44.24 0.10 13.85 16 4 H 0.00 0.05 7.58 -2.39 -0.02 0.03 16 5 C -0.55 -27.44 8.73 25.60 0.22 -27.21 16 6 H 0.08 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.92 -51.37 11.29 21.45 0.24 -51.13 16 9 Si 0.97 40.68 29.54 68.60 2.03 42.71 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 13 N -0.69 -26.44 4.97 -449.10 -2.23 -28.67 16 14 C 0.53 20.01 6.14 86.75 0.53 20.54 16 15 O -0.56 -25.56 8.43 -3.93 -0.03 -25.59 16 16 C -0.11 -2.97 5.85 -20.09 -0.12 -3.09 16 17 C -0.05 -0.93 9.54 22.52 0.21 -0.72 16 18 C -0.11 -1.42 10.01 22.27 0.22 -1.20 16 19 C 0.12 2.00 7.31 22.47 0.16 2.16 16 20 F -0.12 -1.95 17.26 44.97 0.78 -1.17 16 21 C -0.11 -2.26 9.40 22.27 0.21 -2.05 16 22 C -0.12 -3.22 5.40 -19.62 -0.11 -3.33 16 23 C 0.51 16.72 2.78 71.24 0.20 16.92 16 24 F -0.18 -4.96 15.97 44.97 0.72 -4.24 16 25 F -0.18 -6.60 15.02 44.97 0.68 -5.92 16 26 F -0.18 -6.83 15.00 44.97 0.67 -6.15 16 27 H 0.04 1.92 5.65 -2.39 -0.01 1.91 16 28 H 0.02 1.20 7.84 -2.39 -0.02 1.18 16 29 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.07 3.88 5.95 -2.39 -0.01 3.86 16 31 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 33 H 0.40 12.31 6.57 -92.71 -0.61 11.70 16 34 H 0.17 2.35 6.40 -2.91 -0.02 2.33 16 35 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.17 2.76 7.15 -2.91 -0.02 2.74 16 Total: -1.00 -66.21 312.98 6.27 -59.94 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.55 Total: 13.52 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 2.87 Total: 6.71 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.99 Total: -79.80 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.03 Total: -25.59 kcal Atomic # 9 Polarization: -20.33 SS G_CDS: 2.84 Total: -17.49 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -66.21 6.27 -59.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183896873.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.737 kcal (2) G-P(sol) polarization free energy of solvation -66.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds