Wall clock time and date at job start Tue Mar 31 2020 12:27:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38286 * 119.93507 * 2 1
4 4 C 1.38111 * 120.07074 * 180.27700 * 3 2 1
5 5 C 1.38871 * 119.93080 * 359.46669 * 4 3 2
6 6 N 1.39921 * 120.06994 * 180.29549 * 5 4 3
7 7 C 1.46503 * 120.00067 * 150.99149 * 6 5 4
8 8 C 1.50701 * 109.47208 * 96.94196 * 7 6 5
9 9 H 1.07999 * 119.99933 * 0.02562 * 8 7 6
10 10 C 1.37874 * 119.99601 * 180.02562 * 8 7 6
11 11 N 1.31515 * 120.00436 * 359.97438 * 10 8 7
12 12 Si 1.86806 * 119.99565 * 179.97438 * 10 8 7
13 13 H 1.48501 * 109.46673 * 89.99740 * 12 10 8
14 14 H 1.48496 * 109.46965 * 209.99313 * 12 10 8
15 15 H 1.48490 * 109.47135 * 329.99989 * 12 10 8
16 16 C 1.34777 * 120.00443 * 330.99496 * 6 5 4
17 17 O 1.21292 * 119.99733 * 359.31844 * 16 6 5
18 18 C 1.50700 * 120.00439 * 179.32371 * 16 6 5
19 19 F 1.39901 * 109.46635 * 26.83903 * 18 16 6
20 20 F 1.39893 * 109.47176 * 146.83826 * 18 16 6
21 21 C 1.52996 * 109.47163 * 266.84065 * 18 16 6
22 22 F 1.39896 * 109.47449 * 183.73582 * 21 18 16
23 23 F 1.39901 * 109.47002 * 303.73646 * 21 18 16
24 24 C 1.38867 * 119.85680 * 0.28311 * 5 4 3
25 25 C 1.38116 * 119.93476 * 359.97438 * 24 5 4
26 26 H 1.08993 * 109.47267 * 270.23385 * 1 2 3
27 27 H 1.09007 * 109.46456 * 30.22926 * 1 2 3
28 28 H 1.08998 * 109.47415 * 150.22964 * 1 2 3
29 29 H 1.07996 * 119.96028 * 0.05195 * 3 2 1
30 30 H 1.07997 * 120.03076 * 179.74432 * 4 3 2
31 31 H 1.08999 * 109.47200 * 216.94841 * 7 6 5
32 32 H 1.09006 * 109.46587 * 336.94446 * 7 6 5
33 33 H 0.97001 * 119.99558 * 180.02562 * 11 10 8
34 34 H 1.08997 * 109.47246 * 63.73425 * 21 18 16
35 35 H 1.08002 * 120.03500 * 180.02562 * 24 5 4
36 36 H 1.07995 * 119.96750 * 180.02562 * 25 24 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1970 1.1984 0.0000
4 6 3.5781 1.2016 -0.0058
5 6 4.2739 -0.0002 -0.0004
6 7 5.6731 -0.0002 0.0000
7 6 6.4054 -1.1071 0.6203
8 6 6.8056 -2.1011 -0.4395
9 1 6.5413 -1.9256 -1.4718
10 6 7.5092 -3.2344 -0.0910
11 7 7.8315 -3.4479 1.1660
12 14 8.0046 -4.4668 -1.4045
13 1 9.3398 -4.1049 -1.9444
14 1 8.0628 -5.8266 -0.8107
15 1 7.0052 -4.4485 -2.5026
16 6 6.3473 1.0181 -0.5701
17 8 5.7411 1.9285 -1.0945
18 6 7.8542 1.0256 -0.5562
19 9 8.3264 -0.2896 -0.4886
20 9 8.3283 1.6318 -1.7245
21 6 8.3491 1.8084 0.6615
22 9 9.7454 1.8882 0.6287
23 9 7.8077 3.0982 0.6383
24 6 3.5780 -1.2019 0.0048
25 6 2.1969 -1.1985 0.0052
26 1 -0.3633 0.0042 1.0276
27 1 -0.3632 0.8880 -0.5174
28 1 -0.3634 -0.8920 -0.5102
29 1 1.6554 2.1327 0.0008
30 1 4.1164 2.1379 -0.0099
31 1 7.2982 -0.7216 1.1126
32 1 5.7679 -1.5974 1.3561
33 1 8.3268 -4.2452 1.4110
34 1 8.0357 1.2992 1.5728
35 1 4.1162 -2.1382 0.0095
36 1 1.6551 -2.1327 0.0097
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000267172200.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:27:59
Heat of formation + Delta-G solvation = -183.656323 kcal
Electronic energy + Delta-G solvation = -28208.914496 eV
Core-core repulsion = 23579.736128 eV
Total energy + Delta-G solvation = -4629.178369 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 319.094 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-49.65946 -48.39176 -47.27790 -46.82458 -40.31875 -38.27440 -35.67488 -32.97095
-31.82720 -30.60145 -30.20913 -27.79657 -26.32571 -24.27728 -23.40718 -22.12468
-21.44059 -19.95077 -18.28692 -18.11270 -17.77496 -17.05907 -16.82057 -16.55236
-16.13069 -15.44311 -15.02249 -14.83227 -14.43717 -14.33534 -13.98910 -13.91210
-13.66394 -13.56404 -13.48925 -13.45259 -13.31868 -13.09854 -12.83097 -12.57445
-12.49524 -12.10269 -11.95043 -11.60608 -11.20597 -11.13536 -11.05838 -10.75675
-10.72412 -10.34314 -10.14307 -9.45195 -9.16640 -8.69596 -8.55640 -7.48876
-6.32798 -4.37197 1.46614 1.77951 2.37945 2.58883 3.16967 3.20437
3.26204 3.29552 3.81241 4.01565 4.09482 4.16130 4.28323 4.33818
4.84938 5.00493 5.09415 5.12425 5.15851 5.37932 5.48552 5.67910
5.76175 5.84541 5.98666 6.05419 6.33635 6.46481 6.66019 6.74097
6.79348 6.92994 7.04134 7.37629 7.55258 7.68181 7.77166 8.09973
8.62805 9.26989 10.74844
Molecular weight = 319.09amu
Principal moments of inertia in cm(-1)
A = 0.009921 B = 0.006930 C = 0.004489
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2821.731696 B = 4039.356686 C = 6235.754363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.114 4.114
3 C -0.109 4.109
4 C -0.131 4.131
5 C 0.151 3.849
6 N -0.522 5.522
7 C 0.221 3.779
8 C -0.530 4.530
9 H 0.064 0.936
10 C 0.072 3.928
11 N -0.887 5.887
12 Si 0.897 3.103
13 H -0.276 1.276
14 H -0.284 1.284
15 H -0.272 1.272
16 C 0.484 3.516
17 O -0.499 6.499
18 C 0.238 3.762
19 F -0.113 7.113
20 F -0.165 7.165
21 C 0.240 3.760
22 F -0.178 7.178
23 F -0.178 7.178
24 C -0.121 4.121
25 C -0.107 4.107
26 H 0.064 0.936
27 H 0.061 0.939
28 H 0.062 0.938
29 H 0.119 0.881
30 H 0.139 0.861
31 H 0.047 0.953
32 H 0.052 0.948
33 H 0.268 0.732
34 H 0.146 0.854
35 H 0.145 0.855
36 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.355 6.294 1.763 9.116
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.114 4.114
3 C -0.128 4.128
4 C -0.151 4.151
5 C 0.058 3.942
6 N -0.244 5.244
7 C 0.103 3.897
8 C -0.568 4.568
9 H 0.082 0.918
10 C -0.132 4.132
11 N -0.524 5.524
12 Si 0.724 3.276
13 H -0.202 1.202
14 H -0.209 1.209
15 H -0.197 1.197
16 C 0.267 3.733
17 O -0.375 6.375
18 C 0.197 3.803
19 F -0.094 7.094
20 F -0.145 7.145
21 C 0.185 3.815
22 F -0.159 7.159
23 F -0.159 7.159
24 C -0.141 4.141
25 C -0.125 4.125
26 H 0.083 0.917
27 H 0.080 0.920
28 H 0.081 0.919
29 H 0.137 0.863
30 H 0.157 0.843
31 H 0.065 0.935
32 H 0.070 0.930
33 H 0.078 0.922
34 H 0.163 0.837
35 H 0.163 0.837
36 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -6.457 6.632 1.595 9.393
hybrid contribution 0.775 -0.830 -0.833 1.408
sum -5.682 5.802 0.762 8.157
Atomic orbital electron populations
1.20704 0.91668 1.02243 1.01774 1.19845 0.95729 0.93320 1.02544
1.20792 0.93430 0.97254 1.01289 1.21342 0.94230 0.97859 1.01623
1.17848 0.81908 0.94207 1.00225 1.46012 1.04574 1.21934 1.51851
1.20154 0.92096 0.83025 0.94450 1.21259 1.36522 1.05074 0.93956
0.91782 1.24825 0.95100 0.97659 0.95640 1.69889 1.38473 1.27854
1.16193 0.86487 0.79396 0.80162 0.81549 1.20203 1.20921 1.19660
1.20319 0.88236 0.83811 0.80884 1.90714 1.67537 1.35807 1.43418
1.21908 0.92837 0.80992 0.84610 1.93567 1.89541 1.30597 1.95653
1.93102 1.88820 1.83079 1.49547 1.22765 0.76553 0.82102 1.00103
1.93063 1.28948 1.96402 1.97534 1.93076 1.85303 1.40017 1.97508
1.21250 0.94034 0.97960 1.00851 1.20823 0.93417 0.97333 1.00956
0.91685 0.92021 0.91919 0.86303 0.84346 0.93526 0.93001 0.92237
0.83690 0.83742 0.86020
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.11 10.01 36.00 0.36 -0.75 16
2 C -0.11 -1.59 5.88 -104.59 -0.62 -2.20 16
3 C -0.11 -1.62 9.69 -39.61 -0.38 -2.00 16
4 C -0.13 -2.29 8.71 -39.39 -0.34 -2.63 16
5 C 0.15 2.90 6.08 -83.70 -0.51 2.39 16
6 N -0.52 -10.59 2.70 -114.73 -0.31 -10.90 16
7 C 0.22 4.82 4.06 -5.19 -0.02 4.79 16
8 C -0.53 -12.90 6.28 -34.44 -0.22 -13.12 16
9 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16
10 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16
11 N -0.89 -22.89 13.29 55.43 0.74 -22.15 16
12 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16
13 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
15 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16
16 C 0.48 9.83 6.27 -10.98 -0.07 9.77 16
17 O -0.50 -10.67 14.03 5.55 0.08 -10.60 16
18 C 0.24 4.58 1.64 -27.88 -0.05 4.54 16
19 F -0.11 -2.43 11.42 2.25 0.03 -2.41 16
20 F -0.16 -3.29 16.80 2.25 0.04 -3.25 16
21 C 0.24 3.85 4.78 37.16 0.18 4.03 16
22 F -0.18 -2.92 17.28 2.25 0.04 -2.88 16
23 F -0.18 -2.92 16.90 2.25 0.04 -2.88 16
24 C -0.12 -2.18 9.10 -39.39 -0.36 -2.54 16
25 C -0.11 -1.61 9.69 -39.61 -0.38 -1.99 16
26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
27 H 0.06 0.57 8.09 -51.92 -0.42 0.15 16
28 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16
29 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16
30 H 0.14 2.51 5.93 -52.49 -0.31 2.20 16
31 H 0.05 1.01 5.52 -51.93 -0.29 0.73 16
32 H 0.05 1.17 7.31 -51.93 -0.38 0.79 16
33 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16
34 H 0.15 1.91 7.49 -51.93 -0.39 1.52 16
35 H 0.14 2.78 6.76 -52.49 -0.35 2.43 16
36 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16
LS Contribution 320.49 15.07 4.83 4.83
Total: -1.00 -27.34 320.49 -5.43 -32.77
By element:
Atomic # 1 Polarization: 3.89 SS G_CDS: -3.37 Total: 0.52 kcal
Atomic # 6 Polarization: 4.48 SS G_CDS: -2.50 Total: 1.97 kcal
Atomic # 7 Polarization: -33.48 SS G_CDS: 0.43 Total: -33.05 kcal
Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.60 kcal
Atomic # 9 Polarization: -11.56 SS G_CDS: 0.14 Total: -11.42 kcal
Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal
Total LS contribution 4.83 Total: 4.83 kcal
Total: -27.34 -5.43 -32.77 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000267172200.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -150.889 kcal
(2) G-P(sol) polarization free energy of solvation -27.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.231 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.768 kcal
(6) G-S(sol) free energy of system = (1) + (5) -183.656 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds