Wall clock time and date at job start Tue Mar 31 2020 12:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99482 * 2 1 4 4 H 1.48506 * 109.47028 * 239.99424 * 3 2 1 5 5 H 1.48501 * 109.47404 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47137 * 119.99769 * 3 2 1 7 7 C 1.37870 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99770 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00528 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47514 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47388 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47414 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00355 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99545 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00094 * 179.97438 * 13 12 11 16 16 F 1.39902 * 109.47039 * 85.36623 * 15 13 12 17 17 F 1.39895 * 109.47239 * 325.36516 * 15 13 12 18 18 C 1.50702 * 109.46904 * 205.36162 * 15 13 12 19 19 C 1.38417 * 120.02424 * 247.64514 * 18 15 13 20 20 F 1.35104 * 120.01561 * 359.70982 * 19 18 15 21 21 C 1.38471 * 119.97336 * 179.97438 * 19 18 15 22 22 C 1.38209 * 120.02917 * 0.02562 * 21 19 18 23 23 C 1.38205 * 120.04676 * 359.97438 * 22 21 19 24 24 C 1.38414 * 120.02502 * 67.62576 * 18 15 13 25 25 F 1.35103 * 120.01570 * 0.02562 * 24 18 15 26 26 H 0.96997 * 120.00402 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47116 * 59.99257 * 9 7 2 28 28 H 1.08995 * 109.46622 * 299.99887 * 9 7 2 29 29 H 1.09002 * 109.47382 * 59.99608 * 10 9 7 30 30 H 1.09005 * 109.47105 * 300.00224 * 10 9 7 31 31 H 1.09007 * 109.46708 * 59.99832 * 11 10 9 32 32 H 1.08995 * 109.46797 * 300.00105 * 11 10 9 33 33 H 0.97003 * 120.00174 * 359.97438 * 12 11 10 34 34 H 1.08005 * 119.98853 * 180.02562 * 21 19 18 35 35 H 1.07993 * 119.97977 * 180.02562 * 22 21 19 36 36 H 1.08000 * 119.99146 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4806 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0018 13 6 1.9834 -7.3712 0.0019 14 8 0.7911 -7.5929 0.0020 15 6 2.9628 -8.5166 0.0020 16 9 3.3469 -8.8017 1.3167 17 9 4.0907 -8.1658 -0.7477 18 6 2.3134 -9.7328 -0.6065 19 6 2.0378 -10.8376 0.1805 20 9 2.3562 -10.8285 1.4934 21 6 1.4406 -11.9543 -0.3796 22 6 1.1202 -11.9664 -1.7240 23 6 1.3950 -10.8638 -2.5107 24 6 1.9918 -9.7457 -1.9527 25 9 2.2603 -8.6682 -2.7221 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6243 -2.5567 0.8903 29 1 2.8722 -3.6042 0.8905 30 1 2.8722 -3.6042 -0.8895 31 1 0.8536 -5.0450 -0.8886 32 1 0.8542 -5.0445 0.8914 33 1 3.3863 -5.9233 0.0014 34 1 1.2251 -12.8164 0.2344 35 1 0.6541 -12.8376 -2.1599 36 1 1.1446 -10.8743 -3.5612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270161162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:08 Heat of formation + Delta-G solvation = -201.083704 kcal Electronic energy + Delta-G solvation = -26606.885344 eV Core-core repulsion = 21976.951267 eV Total energy + Delta-G solvation = -4629.934077 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.86624 -49.49381 -49.11246 -47.51401 -39.86014 -39.12394 -35.72946 -33.44315 -32.72159 -31.36372 -30.84215 -28.10616 -26.39775 -23.78815 -23.41128 -22.60800 -21.04923 -20.49099 -18.82942 -18.53246 -18.38393 -17.87845 -17.03947 -16.44741 -16.31562 -16.04980 -15.91396 -15.69685 -15.51491 -15.31830 -14.92579 -14.75085 -14.44726 -14.26469 -13.83966 -13.82723 -13.56345 -13.26077 -13.15696 -12.50523 -12.46725 -12.32847 -11.94082 -11.87115 -11.80469 -10.90987 -10.81340 -10.67331 -10.26703 -9.93756 -9.72967 -9.46170 -9.25342 -9.17303 -9.10143 -8.39245 -6.04014 -4.07402 0.25108 0.45784 2.02078 2.39873 2.76282 3.12785 3.30277 3.31421 3.36103 3.38205 3.61939 3.79718 3.93283 4.20074 4.33134 4.43111 4.58556 4.60372 5.06781 5.20969 5.31835 5.35048 5.44563 5.53402 5.59732 5.64546 6.03106 6.13311 6.14584 6.49692 6.66220 6.90937 7.22719 7.59295 7.70901 7.79392 7.93987 8.34717 8.98763 9.57025 11.07258 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.002628 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.574396 B =10650.838068 C =10913.411380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.113 3.887 12 N -0.698 5.698 13 C 0.484 3.516 14 O -0.498 6.498 15 C 0.337 3.663 16 F -0.164 7.164 17 F -0.174 7.174 18 C -0.222 4.222 19 C 0.174 3.826 20 F -0.113 7.113 21 C -0.169 4.169 22 C -0.038 4.038 23 C -0.167 4.167 24 C 0.176 3.824 25 F -0.116 7.116 26 H 0.262 0.738 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.407 0.593 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.843 -27.392 -3.469 28.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.008 4.008 12 N -0.349 5.349 13 C 0.263 3.737 14 O -0.372 6.372 15 C 0.297 3.703 16 F -0.145 7.145 17 F -0.155 7.155 18 C -0.226 4.226 19 C 0.154 3.846 20 F -0.091 7.091 21 C -0.188 4.188 22 C -0.057 4.057 23 C -0.186 4.186 24 C 0.156 3.844 25 F -0.094 7.094 26 H 0.072 0.928 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.242 0.758 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.871 -27.329 -3.422 27.813 hybrid contribution 1.232 1.290 0.215 1.797 sum 5.103 -26.039 -3.207 26.727 Atomic orbital electron populations 1.69950 1.06072 1.26876 1.50393 1.25023 0.94865 0.99326 0.95188 0.86628 0.79556 0.83001 0.78634 1.20210 1.21251 1.20208 1.21153 0.93005 0.90874 1.51207 0.92618 1.19022 0.93771 0.90718 0.97745 1.21936 0.99924 0.92859 1.01320 1.21887 0.91682 0.84544 1.02695 1.46201 1.12004 1.05079 1.71585 1.20331 0.89245 0.84344 0.79749 1.90786 1.14673 1.83707 1.48034 1.19491 0.82546 0.92494 0.75807 1.93149 1.91742 1.94252 1.35339 1.93113 1.53539 1.92756 1.76094 1.19911 1.11451 0.96381 0.94824 1.17027 0.96028 0.93236 0.78321 1.91622 1.89848 1.96592 1.31082 1.21236 1.02624 0.98172 0.96720 1.21028 0.94675 0.97732 0.92218 1.21239 1.02493 0.92435 1.02391 1.17031 0.95997 0.84760 0.86617 1.91615 1.90989 1.52703 1.74083 0.92824 0.96179 0.96178 0.92401 0.92351 0.90941 0.90954 0.75794 0.83043 0.83068 0.82986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.03 0.63 4.97 -27.89 -0.14 0.49 16 10 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 11 C 0.11 1.98 5.67 -4.05 -0.02 1.96 16 12 N -0.70 -10.71 5.49 -60.30 -0.33 -11.04 16 13 C 0.48 7.79 6.71 -10.99 -0.07 7.71 16 14 O -0.50 -9.26 16.24 5.56 0.09 -9.17 16 15 C 0.34 4.73 2.03 -29.03 -0.06 4.67 16 16 F -0.16 -2.33 14.54 2.25 0.03 -2.30 16 17 F -0.17 -2.31 15.82 2.25 0.04 -2.27 16 18 C -0.22 -2.80 4.44 -104.49 -0.46 -3.27 16 19 C 0.17 1.90 7.21 -39.43 -0.28 1.61 16 20 F -0.11 -1.36 14.84 2.25 0.03 -1.33 16 21 C -0.17 -1.22 10.02 -39.51 -0.40 -1.61 16 22 C -0.04 -0.22 10.04 -39.60 -0.40 -0.62 16 23 C -0.17 -1.28 10.03 -39.50 -0.40 -1.67 16 24 C 0.18 2.00 6.95 -39.43 -0.27 1.73 16 25 F -0.12 -1.50 16.00 2.25 0.04 -1.46 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.41 5.33 8.02 -40.82 -0.33 5.00 16 34 H 0.15 0.68 8.06 -52.48 -0.42 0.25 16 35 H 0.15 0.30 8.06 -52.49 -0.42 -0.12 16 36 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -32.54 332.09 -6.11 -38.66 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -3.67 Total: -1.70 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -3.06 Total: -4.87 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.41 Total: -37.02 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.14 Total: -7.36 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.54 -6.11 -38.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270161162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.427 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds