Wall clock time and date at job start Tue Mar 31 2020 12:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99482 * 2 1 4 4 H 1.48506 * 109.47028 * 239.99424 * 3 2 1 5 5 H 1.48501 * 109.47404 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47137 * 119.99769 * 3 2 1 7 7 C 1.37870 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99770 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00528 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47514 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47388 * 179.97438 * 10 9 7 12 12 N 1.46495 * 109.47414 * 180.02562 * 11 10 9 13 13 C 1.34775 * 120.00355 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99545 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00094 * 179.97438 * 13 12 11 16 16 F 1.39902 * 109.47039 * 85.36623 * 15 13 12 17 17 F 1.39895 * 109.47239 * 325.36516 * 15 13 12 18 18 C 1.50702 * 109.46904 * 205.36162 * 15 13 12 19 19 C 1.38417 * 120.02424 * 247.64514 * 18 15 13 20 20 F 1.35104 * 120.01561 * 359.70982 * 19 18 15 21 21 C 1.38471 * 119.97336 * 179.97438 * 19 18 15 22 22 C 1.38209 * 120.02917 * 0.02562 * 21 19 18 23 23 C 1.38205 * 120.04676 * 359.97438 * 22 21 19 24 24 C 1.38414 * 120.02502 * 67.62576 * 18 15 13 25 25 F 1.35103 * 120.01570 * 0.02562 * 24 18 15 26 26 H 0.96997 * 120.00402 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47116 * 59.99257 * 9 7 2 28 28 H 1.08995 * 109.46622 * 299.99887 * 9 7 2 29 29 H 1.09002 * 109.47382 * 59.99608 * 10 9 7 30 30 H 1.09005 * 109.47105 * 300.00224 * 10 9 7 31 31 H 1.09007 * 109.46708 * 59.99832 * 11 10 9 32 32 H 1.08995 * 109.46797 * 300.00105 * 11 10 9 33 33 H 0.97003 * 120.00174 * 359.97438 * 12 11 10 34 34 H 1.08005 * 119.98853 * 180.02562 * 21 19 18 35 35 H 1.07993 * 119.97977 * 180.02562 * 22 21 19 36 36 H 1.08000 * 119.99146 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4806 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0018 13 6 1.9834 -7.3712 0.0019 14 8 0.7911 -7.5929 0.0020 15 6 2.9628 -8.5166 0.0020 16 9 3.3469 -8.8017 1.3167 17 9 4.0907 -8.1658 -0.7477 18 6 2.3134 -9.7328 -0.6065 19 6 2.0378 -10.8376 0.1805 20 9 2.3562 -10.8285 1.4934 21 6 1.4406 -11.9543 -0.3796 22 6 1.1202 -11.9664 -1.7240 23 6 1.3950 -10.8638 -2.5107 24 6 1.9918 -9.7457 -1.9527 25 9 2.2603 -8.6682 -2.7221 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6243 -2.5567 0.8903 29 1 2.8722 -3.6042 0.8905 30 1 2.8722 -3.6042 -0.8895 31 1 0.8536 -5.0450 -0.8886 32 1 0.8542 -5.0445 0.8914 33 1 3.3863 -5.9233 0.0014 34 1 1.2251 -12.8164 0.2344 35 1 0.6541 -12.8376 -2.1599 36 1 1.1446 -10.8743 -3.5612 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270161162.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:08 Heat of formation + Delta-G solvation = -221.189488 kcal Electronic energy + Delta-G solvation = -26607.757196 eV Core-core repulsion = 21976.951267 eV Total energy + Delta-G solvation = -4630.805929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.86708 -50.33299 -50.01868 -48.59858 -41.10576 -39.86657 -37.26270 -35.35437 -33.55980 -33.15192 -31.48161 -29.50078 -27.88835 -25.27732 -24.14539 -23.74881 -22.51728 -21.96524 -19.81466 -19.65782 -19.36222 -18.77391 -18.48843 -17.91216 -17.20688 -17.18265 -16.81828 -16.76105 -16.53766 -16.49609 -16.17959 -16.05676 -15.77006 -15.48941 -15.17460 -14.90176 -14.70493 -14.31627 -14.14501 -13.89735 -13.83304 -13.63402 -13.18328 -13.06127 -12.75237 -12.65634 -12.58587 -12.47803 -11.76109 -11.75264 -11.36715 -11.18251 -10.56308 -10.49884 -10.39471 -9.92548 -8.21097 -6.32586 -0.44975 -0.19547 0.74193 1.22761 1.41129 1.43808 1.51750 2.05918 2.22317 2.38710 2.43618 2.64021 2.93560 3.12777 3.18667 3.22894 3.67840 3.77971 3.99092 4.07542 4.09891 4.44240 4.45810 4.52154 4.70562 4.82000 4.84566 4.91463 5.05181 5.08289 5.11736 5.48089 5.56222 5.66335 5.81399 5.92907 6.20330 6.53917 6.84014 7.37003 8.90790 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.002628 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.574396 B =10650.838068 C =10913.411380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.105 4.105 11 C 0.126 3.874 12 N -0.692 5.692 13 C 0.483 3.517 14 O -0.526 6.526 15 C 0.341 3.659 16 F -0.168 7.168 17 F -0.172 7.172 18 C -0.251 4.251 19 C 0.146 3.854 20 F -0.128 7.128 21 C -0.155 4.155 22 C -0.019 4.019 23 C -0.158 4.158 24 C 0.143 3.857 25 F -0.134 7.134 26 H 0.264 0.736 27 H -0.004 1.004 28 H -0.005 1.005 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.419 0.581 34 H 0.184 0.816 35 H 0.202 0.798 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.614 -29.251 -4.246 30.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.143 4.143 11 C 0.004 3.996 12 N -0.343 5.343 13 C 0.263 3.737 14 O -0.402 6.402 15 C 0.301 3.699 16 F -0.148 7.148 17 F -0.153 7.153 18 C -0.254 4.254 19 C 0.127 3.873 20 F -0.106 7.106 21 C -0.173 4.173 22 C -0.036 4.036 23 C -0.176 4.176 24 C 0.124 3.876 25 F -0.113 7.113 26 H 0.073 0.927 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.201 0.799 35 H 0.219 0.781 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.684 -29.202 -4.198 29.872 hybrid contribution 0.941 1.769 0.433 2.050 sum 5.625 -27.433 -3.765 28.256 Atomic orbital electron populations 1.70093 1.07872 1.27924 1.51507 1.25995 0.95752 1.03472 0.94702 0.85483 0.78222 0.77995 0.79241 1.19072 1.21045 1.19104 1.21641 0.93746 0.92042 1.50764 0.91640 1.18918 0.94313 0.92585 0.95378 1.21648 0.98672 0.91520 1.02427 1.21527 0.91595 0.84513 1.01975 1.46027 1.12300 1.04591 1.71353 1.20728 0.89396 0.84789 0.78801 1.90755 1.16033 1.84259 1.49175 1.19336 0.82165 0.92522 0.75896 1.93136 1.91737 1.94228 1.35722 1.93110 1.53347 1.92842 1.75993 1.19984 1.13352 0.96310 0.95788 1.17434 0.97724 0.94289 0.77888 1.91578 1.90261 1.96735 1.32036 1.21721 1.00304 0.97537 0.97754 1.21645 0.92506 0.98269 0.91203 1.21703 1.00531 0.91416 1.03949 1.17473 0.98035 0.85709 0.86402 1.91559 1.91466 1.53860 1.74382 0.92737 0.98595 0.98622 0.91212 0.91183 0.91769 0.91778 0.74389 0.79869 0.78112 0.80307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.96 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -30.44 9.11 25.60 0.23 -30.20 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.33 4.97 29.85 0.15 1.48 16 10 C -0.10 -4.08 5.27 30.59 0.16 -3.92 16 11 C 0.13 4.52 5.67 86.38 0.49 5.01 16 12 N -0.69 -21.41 5.49 -463.07 -2.54 -23.95 16 13 C 0.48 15.87 6.71 87.66 0.59 16.46 16 14 O -0.53 -20.16 16.24 -3.03 -0.05 -20.21 16 15 C 0.34 9.76 2.03 29.10 0.06 9.82 16 16 F -0.17 -4.86 14.54 44.97 0.65 -4.21 16 17 F -0.17 -4.63 15.82 44.97 0.71 -3.92 16 18 C -0.25 -6.32 4.44 -19.78 -0.09 -6.41 16 19 C 0.15 3.07 7.21 22.37 0.16 3.23 16 20 F -0.13 -3.07 14.84 44.97 0.67 -2.40 16 21 C -0.15 -1.75 10.02 22.32 0.22 -1.52 16 22 C -0.02 -0.13 10.04 22.25 0.22 0.09 16 23 C -0.16 -1.97 10.03 22.32 0.22 -1.75 16 24 C 0.14 3.19 6.95 22.37 0.16 3.34 16 25 F -0.13 -3.52 16.00 44.97 0.72 -2.81 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 31 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.42 10.85 8.02 -92.71 -0.74 10.10 16 34 H 0.18 0.84 8.06 -2.91 -0.02 0.82 16 35 H 0.20 -0.52 8.06 -2.91 -0.02 -0.55 16 36 H 0.18 1.20 8.06 -2.91 -0.02 1.17 16 Total: -1.00 -73.19 332.09 5.91 -67.27 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 0.40 Total: 4.88 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 3.04 Total: -3.98 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -2.26 Total: -80.59 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.05 Total: -20.21 kcal Atomic # 9 Polarization: -16.09 SS G_CDS: 2.75 Total: -13.34 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.19 5.91 -67.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270161162.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.917 kcal (2) G-P(sol) polarization free energy of solvation -73.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds