Wall clock time and date at job start Tue Mar 31 2020 12:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34774 * 126.36499 * 2 1 4 4 C 1.34426 * 107.69268 * 179.97438 * 3 2 1 5 5 C 1.47836 * 125.72489 * 179.97438 * 4 3 2 6 6 C 1.39568 * 120.14393 * 179.75268 * 5 4 3 7 7 C 1.37963 * 119.85252 * 179.72068 * 6 5 4 8 8 C 1.38354 * 120.14066 * 0.55658 * 7 6 5 9 9 C 1.38359 * 120.29600 * 359.71750 * 8 7 6 10 10 C 1.37952 * 120.14060 * 0.02562 * 9 8 7 11 11 N 1.31218 * 108.54750 * 359.73592 * 4 3 2 12 12 C 1.34151 * 108.64743 * 0.43133 * 11 4 3 13 13 C 1.50701 * 126.08209 * 179.82933 * 12 11 4 14 14 S 1.81404 * 109.47098 * 269.69432 * 13 12 11 15 15 O 1.42100 * 109.46600 * 296.38501 * 14 13 12 16 16 C 1.81397 * 103.00143 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.47527 * 179.97438 * 16 14 13 18 18 C 1.50696 * 109.47289 * 179.97438 * 17 16 14 19 19 H 1.07996 * 120.00014 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99840 * 180.02562 * 18 17 16 21 21 N 1.31510 * 119.99971 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99928 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47164 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46740 * 119.99500 * 22 20 18 25 25 H 1.48497 * 109.47226 * 239.99911 * 22 20 18 26 26 H 1.08993 * 109.47457 * 270.02602 * 1 2 3 27 27 H 1.09008 * 109.46973 * 30.02716 * 1 2 3 28 28 H 1.08998 * 109.47046 * 150.02122 * 1 2 3 29 29 H 1.08003 * 120.06739 * 359.97438 * 6 5 4 30 30 H 1.07994 * 119.92659 * 180.27426 * 7 6 5 31 31 H 1.08000 * 119.85225 * 179.70077 * 8 7 6 32 32 H 1.07994 * 119.92935 * 180.02562 * 9 8 7 33 33 H 1.08004 * 120.07628 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47060 * 29.69381 * 13 12 11 35 35 H 1.09001 * 109.47380 * 149.69469 * 13 12 11 36 36 H 1.09007 * 109.46846 * 299.99983 * 16 14 13 37 37 H 1.09007 * 109.47453 * 59.99610 * 16 14 13 38 38 H 1.08996 * 109.46730 * 300.00157 * 17 16 14 39 39 H 1.08998 * 109.46901 * 59.99649 * 17 16 14 40 40 H 0.97000 * 119.99838 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0853 0.0000 4 6 3.5796 0.6549 0.0006 5 6 4.7816 1.5155 0.0002 6 6 6.0541 0.9423 0.0061 7 6 7.1718 1.7511 -0.0001 8 6 7.0331 3.1276 -0.0004 9 6 5.7745 3.7024 -0.0005 10 6 4.6489 2.9049 0.0003 11 7 3.5768 -0.6573 0.0067 12 6 2.3048 -1.0835 0.0005 13 6 1.8501 -2.5203 0.0006 14 16 1.6684 -3.0971 -1.7096 15 8 0.6461 -2.3505 -2.3551 16 6 1.1253 -4.8158 -1.5051 17 6 0.9234 -5.4541 -2.8808 18 6 0.4728 -6.8820 -2.7108 19 1 0.3438 -7.2933 -1.7206 20 6 0.2263 -7.6638 -3.8195 21 7 0.3838 -7.1630 -5.0253 22 14 -0.3315 -9.4341 -3.6088 23 1 -0.4322 -9.7524 -2.1619 24 1 -1.6597 -9.6139 -4.2483 25 1 0.6532 -10.3428 -4.2488 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8902 -0.5135 29 1 6.1635 -0.1322 0.0113 30 1 8.1569 1.3087 0.0000 31 1 7.9112 3.7564 -0.0004 32 1 5.6732 4.7776 -0.0012 33 1 3.6669 3.3547 -0.0002 34 1 2.5889 -3.1351 0.5149 35 1 0.8918 -2.5981 0.5141 36 1 1.8826 -5.3728 -0.9533 37 1 0.1852 -4.8367 -0.9537 38 1 0.1660 -4.8969 -3.4321 39 1 1.8632 -5.4332 -3.4325 40 1 0.2107 -7.7131 -5.8053 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276549513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:40 Heat of formation + Delta-G solvation = -1.482207 kcal Electronic energy + Delta-G solvation = -22838.646642 eV Core-core repulsion = 19325.437852 eV Total energy + Delta-G solvation = -3513.208790 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.40968 -39.32181 -35.35715 -35.15521 -33.68277 -33.58933 -31.35958 -31.22439 -30.88664 -29.26118 -26.14453 -25.26466 -23.37132 -23.01889 -21.54198 -21.27319 -20.45412 -17.89019 -17.18286 -16.90530 -16.42570 -16.34555 -15.78882 -15.14955 -14.70791 -14.67736 -14.48963 -14.21429 -14.01153 -13.77499 -13.65235 -13.42471 -13.09487 -12.96940 -12.64953 -12.42408 -12.28361 -11.82549 -11.70868 -11.47569 -11.43806 -11.19000 -10.97964 -10.73178 -10.60408 -10.21522 -10.14079 -9.82729 -9.44217 -9.32673 -9.06663 -8.42072 -8.21986 -7.62760 -6.04626 -4.08806 0.40235 1.03968 1.46106 1.97649 2.41661 2.73803 3.16441 3.28569 3.36070 3.39742 3.52531 3.64462 4.24095 4.42812 4.50064 4.58241 4.64617 4.71271 4.76200 5.00433 5.06449 5.14257 5.30413 5.30650 5.31963 5.46887 5.49192 5.64666 5.72117 5.84766 5.92751 5.94407 6.05986 6.11833 6.12197 6.14352 6.25047 6.53893 6.80325 7.50119 7.58389 7.60714 7.90650 8.31684 8.96194 9.55328 11.06000 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.024553 B = 0.002379 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.121039 B =11768.164387 C =12411.334580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.030 4.030 3 O -0.194 6.194 4 C 0.220 3.780 5 C -0.011 4.011 6 C -0.071 4.071 7 C -0.121 4.121 8 C -0.105 4.105 9 C -0.122 4.122 10 C -0.093 4.093 11 N -0.453 5.453 12 C 0.019 3.981 13 C -0.376 4.376 14 S 1.228 4.772 15 O -0.844 6.844 16 C -0.416 4.416 17 C 0.038 3.962 18 C -0.518 4.518 19 H 0.058 0.942 20 C 0.056 3.944 21 N -0.892 5.892 22 Si 0.895 3.105 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.282 1.282 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.023 0.977 39 H 0.029 0.971 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.497 20.594 12.782 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.085 4.085 3 O -0.082 6.082 4 C 0.017 3.983 5 C -0.012 4.012 6 C -0.090 4.090 7 C -0.139 4.139 8 C -0.124 4.124 9 C -0.140 4.140 10 C -0.112 4.112 11 N -0.183 5.183 12 C -0.103 4.103 13 C -0.509 4.509 14 S 1.428 4.572 15 O -0.839 6.839 16 C -0.556 4.556 17 C 0.000 4.000 18 C -0.557 4.557 19 H 0.076 0.924 20 C -0.145 4.145 21 N -0.531 5.531 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.208 1.208 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.160 0.840 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.135 20.752 11.798 27.246 hybrid contribution -2.952 -0.801 1.225 3.295 sum 10.183 19.951 13.023 25.910 Atomic orbital electron populations 1.20390 0.83719 1.05501 1.03377 1.23320 0.94904 0.83818 1.06461 1.84411 1.17308 1.36141 1.70298 1.23602 0.82845 0.88895 1.03000 1.17291 0.87721 0.91024 1.05156 1.21253 0.90106 1.01325 0.96362 1.21141 0.98676 0.93564 1.00473 1.21366 0.97572 0.95214 0.98209 1.21061 0.92088 1.00049 1.00785 1.21248 0.99746 0.91951 0.98276 1.70444 1.22135 1.08252 1.17438 1.20446 0.88029 0.95182 1.06691 1.26224 1.06063 0.95061 1.23553 1.70942 1.15373 0.86659 0.84271 1.93062 1.62579 1.66212 1.62065 1.27628 1.06964 1.13342 1.07683 1.18790 0.97961 0.95708 0.87569 1.21186 1.45720 0.96152 0.92688 0.92394 1.25056 0.95535 0.98690 0.95268 1.69971 1.48996 1.36544 0.97598 0.86485 0.78369 0.84646 0.78206 1.19742 1.21005 1.20811 0.89914 0.90048 0.88098 0.84038 0.84991 0.85544 0.85330 0.85283 0.84940 0.88462 0.87486 0.90835 0.95870 0.95302 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.04 36.01 0.36 -0.54 16 2 C -0.03 -0.45 7.38 -35.61 -0.26 -0.71 16 3 O -0.19 -2.79 10.52 4.07 0.04 -2.75 16 4 C 0.22 3.06 7.90 -13.89 -0.11 2.95 16 5 C -0.01 -0.12 5.87 -104.98 -0.62 -0.74 16 6 C -0.07 -0.68 9.69 -39.19 -0.38 -1.06 16 7 C -0.12 -0.87 10.03 -39.64 -0.40 -1.27 16 8 C -0.11 -0.68 10.04 -39.49 -0.40 -1.08 16 9 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 10 C -0.09 -0.85 9.72 -39.19 -0.38 -1.23 16 11 N -0.45 -6.74 10.91 -7.97 -0.09 -6.82 16 12 C 0.02 0.28 6.36 -82.88 -0.53 -0.25 16 13 C -0.38 -5.13 6.08 36.01 0.22 -4.92 16 14 S 1.23 20.43 13.14 -107.50 -1.41 19.02 16 15 O -0.84 -18.43 17.46 -35.23 -0.62 -19.05 16 16 C -0.42 -8.08 5.86 37.16 0.22 -7.86 16 17 C 0.04 0.98 4.98 -27.89 -0.14 0.84 16 18 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 22 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 28 H 0.10 1.41 7.09 -51.93 -0.37 1.04 16 29 H 0.14 1.32 7.83 -52.48 -0.41 0.91 16 30 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 31 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 32 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 33 H 0.13 1.08 7.90 -52.48 -0.41 0.67 16 34 H 0.13 1.50 8.14 -51.92 -0.42 1.08 16 35 H 0.10 1.25 7.78 -51.92 -0.40 0.85 16 36 H 0.11 1.79 8.14 -51.92 -0.42 1.37 16 37 H 0.07 1.45 8.14 -51.92 -0.42 1.03 16 38 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -36.33 362.55 -9.48 -45.81 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.37 Total: -1.61 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: -3.22 Total: -30.48 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.65 Total: -32.91 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.57 Total: -21.80 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 20.43 SS G_CDS: -1.41 Total: 19.02 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.33 -9.48 -45.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276549513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.326 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds