Wall clock time and date at job start Tue Mar 31 2020 13:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46926 * 224.79904 * 3 2 1 5 5 C 1.36930 * 120.00555 * 273.26449 * 4 3 2 6 6 H 1.08000 * 120.00256 * 186.69674 * 5 4 3 7 7 C 1.38820 * 119.99764 * 6.69615 * 5 4 3 8 8 N 1.31616 * 119.99844 * 25.19413 * 7 5 4 9 9 Si 1.86799 * 119.99834 * 205.19814 * 7 5 4 10 10 H 1.48506 * 109.47187 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47251 * 119.99793 * 9 7 5 12 12 H 1.48503 * 109.46800 * 240.00025 * 9 7 5 13 13 S 1.65608 * 119.99518 * 93.26435 * 4 3 2 14 14 O 1.42098 * 106.40001 * 156.46050 * 13 4 3 15 15 O 1.42100 * 106.40402 * 23.53620 * 13 4 3 16 16 C 1.76199 * 107.21551 * 269.99925 * 13 4 3 17 17 C 1.38268 * 120.11324 * 90.00615 * 16 13 4 18 18 C 1.37939 * 119.77043 * 180.14926 * 17 16 13 19 19 C 1.38904 * 120.54462 * 359.97438 * 18 17 16 20 20 C 1.37670 * 119.68470 * 359.74360 * 19 18 17 21 21 C 1.37934 * 120.11772 * 270.02257 * 16 13 4 22 22 C 1.50628 * 122.55807 * 180.74072 * 20 19 18 23 23 C 1.52733 * 110.59427 * 342.00708 * 22 20 19 24 24 C 1.53314 * 108.40017 * 51.13035 * 23 22 20 25 25 C 1.50637 * 117.76177 * 179.43013 * 19 18 17 26 26 H 4.40640 * 5.51439 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47236 * 104.80642 * 3 2 1 28 28 H 1.09000 * 109.47204 * 344.80463 * 3 2 1 29 29 H 0.97006 * 120.00042 * 180.02562 * 8 7 5 30 30 H 1.07993 * 120.11773 * 0.16374 * 17 16 13 31 31 H 1.07997 * 119.72479 * 180.02562 * 18 17 16 32 32 H 1.08004 * 119.72102 * 0.02562 * 21 16 13 33 33 H 1.08998 * 109.25507 * 102.29231 * 22 20 19 34 34 H 1.08997 * 109.25000 * 221.72025 * 22 20 19 35 35 H 1.08997 * 109.68052 * 170.86027 * 23 22 20 36 36 H 1.09002 * 109.67636 * 291.39865 * 23 22 20 37 37 H 1.08995 * 109.68652 * 49.90810 * 24 23 22 38 38 H 1.08996 * 109.67899 * 170.42596 * 24 23 22 39 39 H 1.08996 * 109.24890 * 282.58329 * 25 19 18 40 40 H 1.08999 * 109.25072 * 42.01150 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9810 0.9733 5 6 3.2979 2.2893 0.6040 6 1 3.7582 2.9892 1.2856 7 6 2.8725 2.7161 -0.6466 8 7 1.9099 2.0702 -1.2700 9 14 3.6663 4.2068 -1.4447 10 1 4.7151 4.7504 -0.5448 11 1 4.2799 3.8086 -2.7369 12 1 2.6344 5.2471 -1.6863 13 16 3.4871 0.5067 2.5202 14 8 4.4118 1.4576 3.0301 15 8 3.7584 -0.8868 2.4606 16 6 2.0139 0.6866 3.4699 17 6 1.1213 -0.3645 3.5714 18 6 -0.0313 -0.2149 4.3143 19 6 -0.3031 0.9833 4.9623 20 6 0.5885 2.0279 4.8660 21 6 1.7469 1.8765 4.1145 22 6 0.3668 3.3489 5.5549 23 6 -1.0988 3.5072 5.9544 24 6 -1.5286 2.2531 6.7245 25 6 -1.5860 1.0823 5.7454 26 1 -1.0501 -0.0001 -0.0003 27 1 3.0093 0.2634 -0.9935 28 1 3.0098 -0.9909 0.2694 29 1 1.6128 2.3682 -2.1441 30 1 1.3259 -1.2994 3.0710 31 1 -0.7278 -1.0365 4.3934 32 1 2.4443 2.6972 4.0342 33 1 0.9900 3.3976 6.4479 34 1 0.6445 4.1577 4.8791 35 1 -1.2133 4.3853 6.5899 36 1 -1.7129 3.6177 5.0607 37 1 -0.8047 2.0389 7.5107 38 1 -2.5128 2.4123 7.1652 39 1 -2.4172 1.2306 5.0561 40 1 -1.7407 0.1569 6.3002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281288676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:17 Heat of formation + Delta-G solvation = 7.223008 kcal Electronic energy + Delta-G solvation = -25155.720060 eV Core-core repulsion = 21642.888756 eV Total energy + Delta-G solvation = -3512.831304 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.63027 -36.32523 -35.92898 -35.77522 -34.48658 -32.31992 -32.02287 -31.12874 -29.99312 -28.55839 -26.59088 -23.88259 -23.65587 -22.58106 -21.89463 -19.49844 -18.48544 -17.90593 -17.00437 -16.59000 -16.27283 -15.58575 -15.33695 -14.63891 -14.40157 -14.28228 -13.97776 -13.80355 -13.41547 -13.32624 -13.10060 -12.81033 -12.47572 -12.36579 -11.99243 -11.85719 -11.38822 -11.33643 -11.21825 -11.02678 -10.90356 -10.79601 -10.77610 -10.62204 -10.48476 -10.29733 -10.28379 -9.85529 -9.52049 -9.22942 -8.86318 -8.44817 -8.29150 -8.21477 -6.58962 -3.96831 1.41074 1.75493 1.83585 3.06512 3.15153 3.23264 3.73975 4.00925 4.02067 4.17876 4.58349 4.69168 4.74323 4.76524 4.88148 5.07394 5.18552 5.22038 5.33862 5.55364 5.56800 5.57410 5.59711 5.72577 5.76966 5.89119 5.90255 5.98748 6.04745 6.16218 6.28492 6.28927 6.44683 6.52286 6.72394 6.74657 6.86172 6.93155 6.99318 7.14949 7.27265 7.44921 8.16210 8.57683 8.91343 8.99706 10.33073 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.005260 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.365975 B = 5322.201339 C = 5720.849561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.110 4.110 3 C 0.235 3.765 4 N -0.798 5.798 5 C -0.247 4.247 6 H 0.122 0.878 7 C 0.029 3.971 8 N -0.821 5.821 9 Si 0.928 3.072 10 H -0.261 1.261 11 H -0.275 1.275 12 H -0.280 1.280 13 S 2.541 3.459 14 O -0.983 6.983 15 O -0.998 6.998 16 C -0.656 4.656 17 C -0.028 4.028 18 C -0.148 4.148 19 C -0.050 4.050 20 C -0.106 4.106 21 C -0.022 4.022 22 C -0.079 4.079 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.081 4.081 26 H 0.195 0.805 27 H 0.116 0.884 28 H 0.081 0.919 29 H 0.275 0.725 30 H 0.127 0.873 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.804 0.630 7.111 9.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.113 4.113 3 C 0.109 3.891 4 N -0.620 5.620 5 C -0.394 4.394 6 H 0.140 0.860 7 C -0.183 4.183 8 N -0.459 5.459 9 Si 0.753 3.247 10 H -0.185 1.185 11 H -0.200 1.200 12 H -0.206 1.206 13 S 2.639 3.361 14 O -0.973 6.973 15 O -0.987 6.987 16 C -0.734 4.734 17 C -0.047 4.047 18 C -0.167 4.167 19 C -0.050 4.050 20 C -0.107 4.107 21 C -0.041 4.041 22 C -0.116 4.116 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.118 4.118 26 H 0.212 0.788 27 H 0.134 0.866 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.135 0.865 32 H 0.147 0.853 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.087 0.155 7.518 9.675 hybrid contribution -1.112 0.877 -0.327 1.454 sum -7.199 1.032 7.191 10.228 Atomic orbital electron populations 1.24154 0.95245 1.05504 1.03623 1.23373 0.94535 0.95825 0.97574 1.18488 0.83933 0.90944 0.95696 1.55280 1.72208 1.15123 1.19394 1.20133 1.31323 0.87706 1.00242 0.86009 1.25574 0.95172 0.99280 0.98303 1.70245 1.21394 1.39140 1.15141 0.85828 0.79473 0.80015 0.79416 1.18452 1.20036 1.20577 1.10882 0.78202 0.73444 0.73538 1.93358 1.62139 1.62000 1.79755 1.93348 1.85766 1.33002 1.86617 1.32326 1.26404 0.99667 1.15039 1.20690 0.92253 0.97231 0.94535 1.21128 0.98151 0.97214 1.00162 1.19625 0.95281 0.93311 0.96794 1.19633 0.95352 0.95435 1.00243 1.20851 0.95124 0.95957 0.92204 1.20437 0.96755 0.94469 0.99926 1.21537 0.96315 0.97535 1.00233 1.21535 1.01246 0.94955 0.97855 1.20499 0.95004 0.99011 0.97328 0.78832 0.86620 0.90111 0.91428 0.85543 0.86522 0.85273 0.90965 0.90662 0.91657 0.91627 0.91717 0.91721 0.90685 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.56 19.25 29.55 0.57 -4.99 16 2 C -0.11 -2.47 11.25 -37.12 -0.42 -2.89 16 3 C 0.23 5.25 5.45 -6.83 -0.04 5.21 16 4 N -0.80 -18.93 2.88 -62.77 -0.18 -19.11 16 5 C -0.25 -6.00 9.48 -15.06 -0.14 -6.15 16 6 H 0.12 2.94 7.22 -52.49 -0.38 2.56 16 7 C 0.03 0.67 4.92 -17.43 -0.09 0.58 16 8 N -0.82 -19.44 8.96 55.49 0.50 -18.95 16 9 Si 0.93 18.30 29.62 -169.99 -5.04 13.26 16 10 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 11 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 12 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 13 S 2.54 59.93 5.66 -107.50 -0.61 59.32 16 14 O -0.98 -25.00 16.06 -57.17 -0.92 -25.91 16 15 O -1.00 -24.51 15.87 -57.17 -0.91 -25.41 16 16 C -0.66 -14.20 5.97 -39.68 -0.24 -14.44 16 17 C -0.03 -0.56 9.53 -39.68 -0.38 -0.94 16 18 C -0.15 -2.54 9.61 -39.44 -0.38 -2.92 16 19 C -0.05 -0.81 5.74 -104.61 -0.60 -1.41 16 20 C -0.11 -1.84 5.74 -104.62 -0.60 -2.44 16 21 C -0.02 -0.45 9.10 -39.45 -0.36 -0.81 16 22 C -0.08 -1.09 5.67 -28.05 -0.16 -1.25 16 23 C -0.12 -1.35 5.98 -26.71 -0.16 -1.51 16 24 C -0.12 -1.27 5.98 -26.70 -0.16 -1.43 16 25 C -0.08 -1.00 5.67 -28.05 -0.16 -1.16 16 26 H 0.19 3.39 7.80 -54.08 -0.42 2.97 16 27 H 0.12 2.60 6.41 -51.93 -0.33 2.26 16 28 H 0.08 1.68 6.95 -51.93 -0.36 1.32 16 29 H 0.27 6.16 8.31 -40.82 -0.34 5.82 16 30 H 0.13 2.45 7.63 -52.49 -0.40 2.05 16 31 H 0.12 1.66 8.05 -52.49 -0.42 1.24 16 32 H 0.13 2.57 7.60 -52.48 -0.40 2.17 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -29.21 344.69 -10.49 -39.70 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.23 Total: 8.44 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: -3.30 Total: -36.53 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.32 Total: -38.05 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -1.83 Total: -51.33 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.04 Total: 13.26 kcal Atomic # 16 Polarization: 59.93 SS G_CDS: -0.61 Total: 59.32 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.21 -10.49 -39.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281288676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.918 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds