Wall clock time and date at job start Tue Mar 31 2020 13:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46926 * 224.79904 * 3 2 1 5 5 C 1.36930 * 120.00555 * 273.26449 * 4 3 2 6 6 H 1.08000 * 120.00256 * 186.69674 * 5 4 3 7 7 C 1.38820 * 119.99764 * 6.69615 * 5 4 3 8 8 N 1.31616 * 119.99844 * 25.19413 * 7 5 4 9 9 Si 1.86799 * 119.99834 * 205.19814 * 7 5 4 10 10 H 1.48506 * 109.47187 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47251 * 119.99793 * 9 7 5 12 12 H 1.48503 * 109.46800 * 240.00025 * 9 7 5 13 13 S 1.65608 * 119.99518 * 93.26435 * 4 3 2 14 14 O 1.42098 * 106.40001 * 156.46050 * 13 4 3 15 15 O 1.42100 * 106.40402 * 23.53620 * 13 4 3 16 16 C 1.76199 * 107.21551 * 269.99925 * 13 4 3 17 17 C 1.38268 * 120.11324 * 90.00615 * 16 13 4 18 18 C 1.37939 * 119.77043 * 180.14926 * 17 16 13 19 19 C 1.38904 * 120.54462 * 359.97438 * 18 17 16 20 20 C 1.37670 * 119.68470 * 359.74360 * 19 18 17 21 21 C 1.37934 * 120.11772 * 270.02257 * 16 13 4 22 22 C 1.50628 * 122.55807 * 180.74072 * 20 19 18 23 23 C 1.52733 * 110.59427 * 342.00708 * 22 20 19 24 24 C 1.53314 * 108.40017 * 51.13035 * 23 22 20 25 25 C 1.50637 * 117.76177 * 179.43013 * 19 18 17 26 26 H 4.40640 * 5.51439 * 179.97438 * 4 1 2 27 27 H 1.08996 * 109.47236 * 104.80642 * 3 2 1 28 28 H 1.09000 * 109.47204 * 344.80463 * 3 2 1 29 29 H 0.97006 * 120.00042 * 180.02562 * 8 7 5 30 30 H 1.07993 * 120.11773 * 0.16374 * 17 16 13 31 31 H 1.07997 * 119.72479 * 180.02562 * 18 17 16 32 32 H 1.08004 * 119.72102 * 0.02562 * 21 16 13 33 33 H 1.08998 * 109.25507 * 102.29231 * 22 20 19 34 34 H 1.08997 * 109.25000 * 221.72025 * 22 20 19 35 35 H 1.08997 * 109.68052 * 170.86027 * 23 22 20 36 36 H 1.09002 * 109.67636 * 291.39865 * 23 22 20 37 37 H 1.08995 * 109.68652 * 49.90810 * 24 23 22 38 38 H 1.08996 * 109.67899 * 170.42596 * 24 23 22 39 39 H 1.08996 * 109.24890 * 282.58329 * 25 19 18 40 40 H 1.08999 * 109.25072 * 42.01150 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9810 0.9733 5 6 3.2979 2.2893 0.6040 6 1 3.7582 2.9892 1.2856 7 6 2.8725 2.7161 -0.6466 8 7 1.9099 2.0702 -1.2700 9 14 3.6663 4.2068 -1.4447 10 1 4.7151 4.7504 -0.5448 11 1 4.2799 3.8086 -2.7369 12 1 2.6344 5.2471 -1.6863 13 16 3.4871 0.5067 2.5202 14 8 4.4118 1.4576 3.0301 15 8 3.7584 -0.8868 2.4606 16 6 2.0139 0.6866 3.4699 17 6 1.1213 -0.3645 3.5714 18 6 -0.0313 -0.2149 4.3143 19 6 -0.3031 0.9833 4.9623 20 6 0.5885 2.0279 4.8660 21 6 1.7469 1.8765 4.1145 22 6 0.3668 3.3489 5.5549 23 6 -1.0988 3.5072 5.9544 24 6 -1.5286 2.2531 6.7245 25 6 -1.5860 1.0823 5.7454 26 1 -1.0501 -0.0001 -0.0003 27 1 3.0093 0.2634 -0.9935 28 1 3.0098 -0.9909 0.2694 29 1 1.6128 2.3682 -2.1441 30 1 1.3259 -1.2994 3.0710 31 1 -0.7278 -1.0365 4.3934 32 1 2.4443 2.6972 4.0342 33 1 0.9900 3.3976 6.4479 34 1 0.6445 4.1577 4.8791 35 1 -1.2133 4.3853 6.5899 36 1 -1.7129 3.6177 5.0607 37 1 -0.8047 2.0389 7.5107 38 1 -2.5128 2.4123 7.1652 39 1 -2.4172 1.2306 5.0561 40 1 -1.7407 0.1569 6.3002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281288676.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:15 Heat of formation + Delta-G solvation = -8.339561 kcal Electronic energy + Delta-G solvation = -25156.394904 eV Core-core repulsion = 21642.888756 eV Total energy + Delta-G solvation = -3513.506147 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.91545 -38.10294 -37.87361 -36.96294 -36.47138 -33.77049 -33.55567 -32.88023 -31.27215 -29.79339 -28.35277 -25.67094 -24.82736 -23.79514 -23.24450 -20.75256 -20.22713 -19.61078 -18.70703 -18.35049 -17.98401 -17.00423 -16.60872 -16.34370 -16.02462 -15.55608 -15.38533 -15.12047 -14.98889 -14.73906 -14.44068 -14.26501 -13.98635 -13.61318 -13.57333 -13.18229 -13.14210 -12.80712 -12.72180 -12.65116 -12.61813 -12.49405 -12.30027 -12.01951 -11.86996 -11.77375 -11.50212 -11.35509 -11.08047 -10.93620 -10.56829 -10.09485 -9.85472 -9.62350 -8.34097 -5.82338 -0.22811 0.08106 0.38247 1.47347 1.52973 1.65905 2.03293 2.34413 2.47064 2.53365 2.81285 2.92770 3.22845 3.57186 3.71527 3.80854 3.94490 3.95507 4.02086 4.16589 4.25602 4.30672 4.48742 4.53434 4.61235 4.67070 4.80147 4.92162 4.95141 4.98994 5.02089 5.08630 5.13145 5.23227 5.25238 5.35215 5.40242 5.43165 5.43809 5.52634 5.60464 6.04816 6.35247 6.77822 7.18511 7.23634 8.58428 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.005260 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.365975 B = 5322.201339 C = 5720.849561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.145 4.145 3 C 0.236 3.764 4 N -0.811 5.811 5 C -0.283 4.283 6 H 0.111 0.889 7 C 0.002 3.998 8 N -0.841 5.841 9 Si 0.986 3.014 10 H -0.264 1.264 11 H -0.268 1.268 12 H -0.276 1.276 13 S 2.561 3.439 14 O -1.009 7.009 15 O -1.014 7.014 16 C -0.681 4.681 17 C -0.047 4.047 18 C -0.146 4.146 19 C -0.044 4.044 20 C -0.110 4.110 21 C -0.046 4.046 22 C -0.083 4.083 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.082 4.082 26 H 0.227 0.773 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.278 0.722 30 H 0.123 0.877 31 H 0.152 0.848 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.672 1.113 8.554 12.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.147 4.147 3 C 0.111 3.889 4 N -0.634 5.634 5 C -0.428 4.428 6 H 0.128 0.872 7 C -0.208 4.208 8 N -0.479 5.479 9 Si 0.809 3.191 10 H -0.188 1.188 11 H -0.193 1.193 12 H -0.202 1.202 13 S 2.663 3.337 14 O -0.999 6.999 15 O -1.004 7.004 16 C -0.763 4.763 17 C -0.067 4.067 18 C -0.164 4.164 19 C -0.044 4.044 20 C -0.110 4.110 21 C -0.066 4.066 22 C -0.120 4.120 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.118 4.118 26 H 0.243 0.757 27 H 0.127 0.873 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.136 0.864 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.928 0.643 8.911 12.630 hybrid contribution -0.320 0.652 -0.607 0.946 sum -9.247 1.295 8.305 12.496 Atomic orbital electron populations 1.24918 0.96096 1.04009 1.02104 1.23546 0.95009 0.97205 0.98981 1.18428 0.84598 0.90771 0.95114 1.54951 1.73610 1.15233 1.19560 1.20124 1.33600 0.87816 1.01219 0.87190 1.26203 0.95149 1.01473 0.97962 1.70314 1.21928 1.40251 1.15375 0.84975 0.78498 0.77157 0.78475 1.18811 1.19293 1.20192 1.09419 0.78096 0.72572 0.73620 1.93317 1.63525 1.62721 1.80350 1.93316 1.86332 1.33644 1.87072 1.31814 1.26059 1.01414 1.17050 1.20808 0.93396 0.96645 0.95824 1.21544 0.97407 0.98741 0.98713 1.20212 0.96395 0.92143 0.95647 1.20064 0.94197 0.97498 0.99290 1.20972 0.96673 0.95287 0.93652 1.20555 0.99254 0.92252 0.99904 1.21556 0.93890 0.99190 1.00664 1.21566 1.02899 0.93581 0.97277 1.20648 0.92601 1.00960 0.97640 0.75669 0.87271 0.89577 0.91180 0.85895 0.83057 0.86415 0.89852 0.91129 0.89265 0.92072 0.91691 0.88825 0.89293 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.34 19.25 74.32 1.43 -8.91 16 2 C -0.14 -6.57 11.25 31.13 0.35 -6.22 16 3 C 0.24 10.96 5.45 84.57 0.46 11.42 16 4 N -0.81 -40.18 2.88 -352.51 -1.02 -41.20 16 5 C -0.28 -14.35 9.48 84.04 0.80 -13.55 16 6 H 0.11 5.65 7.22 -2.91 -0.02 5.63 16 7 C 0.00 0.09 4.92 84.86 0.42 0.51 16 8 N -0.84 -40.43 8.96 21.65 0.19 -40.24 16 9 Si 0.99 38.10 29.62 68.60 2.03 40.14 16 10 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 11 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 12 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 13 S 2.56 126.38 5.66 -56.49 -0.32 126.06 16 14 O -1.01 -54.02 16.06 -128.00 -2.06 -56.08 16 15 O -1.01 -51.71 15.87 -128.00 -2.03 -53.74 16 16 C -0.68 -30.26 5.97 22.20 0.13 -30.13 16 17 C -0.05 -1.89 9.53 22.21 0.21 -1.68 16 18 C -0.15 -4.68 9.61 22.36 0.21 -4.47 16 19 C -0.04 -1.30 5.74 -19.86 -0.11 -1.42 16 20 C -0.11 -3.69 5.74 -19.86 -0.11 -3.80 16 21 C -0.05 -1.93 9.10 22.36 0.20 -1.72 16 22 C -0.08 -2.13 5.67 29.74 0.17 -1.96 16 23 C -0.12 -2.20 5.98 30.61 0.18 -2.02 16 24 C -0.12 -1.93 5.98 30.61 0.18 -1.75 16 25 C -0.08 -1.62 5.67 29.74 0.17 -1.46 16 26 H 0.23 7.35 7.80 -4.41 -0.03 7.31 16 27 H 0.11 5.12 6.41 -2.39 -0.02 5.11 16 28 H 0.09 3.77 6.95 -2.39 -0.02 3.75 16 29 H 0.28 12.52 8.31 -92.70 -0.77 11.75 16 30 H 0.12 4.84 7.63 -2.91 -0.02 4.82 16 31 H 0.15 3.74 8.05 -2.91 -0.02 3.71 16 32 H 0.12 4.98 7.60 -2.91 -0.02 4.96 16 33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 37 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 1.53 8.12 -2.39 -0.02 1.51 16 Total: -1.00 -64.69 344.69 2.54 -62.15 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 1.04 Total: 30.06 kcal Atomic # 6 Polarization: -71.85 SS G_CDS: 4.69 Total: -67.15 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -0.82 Total: -81.44 kcal Atomic # 8 Polarization: -105.73 SS G_CDS: -4.09 Total: -109.82 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.14 kcal Atomic # 16 Polarization: 126.38 SS G_CDS: -0.32 Total: 126.06 kcal Total: -64.69 2.54 -62.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281288676.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.812 kcal (2) G-P(sol) polarization free energy of solvation -64.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds