Wall clock time and date at job start Tue Mar 31 2020 12:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99513 * 2 1 4 4 H 1.48496 * 109.46888 * 269.99627 * 3 2 1 5 5 H 1.48497 * 109.47231 * 30.00227 * 3 2 1 6 6 H 1.48509 * 109.46767 * 150.00187 * 3 2 1 7 7 C 1.38722 * 120.00525 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99964 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00424 * 180.02562 * 7 2 1 10 10 C 1.76196 * 99.99936 * 174.86252 * 9 7 2 11 11 C 1.39222 * 120.02325 * 94.56358 * 10 9 7 12 12 C 1.38140 * 120.20457 * 180.27575 * 11 10 9 13 13 C 1.38086 * 120.23839 * 359.72446 * 12 11 10 14 14 C 1.39624 * 120.04422 * 359.97438 * 13 12 11 15 15 C 1.47863 * 120.10397 * 180.02562 * 14 13 12 16 16 O 1.21557 * 119.99668 * 186.68475 * 15 14 13 17 17 N 1.34775 * 120.00007 * 6.67956 * 15 14 13 18 18 C 1.47314 * 135.89726 * 5.16814 * 17 15 14 19 19 C 1.52388 * 87.52599 * 154.11247 * 18 17 15 20 20 C 1.47318 * 135.89640 * 185.53453 * 17 15 14 21 21 C 1.53247 * 116.75973 * 268.23420 * 19 18 17 22 22 C 1.54814 * 103.52244 * 228.52881 * 21 19 18 23 23 O 1.44535 * 104.88692 * 23.75923 * 22 21 19 24 24 C 1.44749 * 105.53980 * 320.32694 * 23 22 21 25 25 C 1.38841 * 120.02165 * 274.26210 * 10 9 7 26 26 H 0.97003 * 120.00568 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.90072 * 359.97438 * 11 10 9 28 28 H 1.07992 * 119.88131 * 179.69964 * 12 11 10 29 29 H 1.08005 * 119.97371 * 179.97438 * 13 12 11 30 30 H 1.09003 * 113.53081 * 268.75589 * 18 17 15 31 31 H 1.09006 * 113.52471 * 39.37977 * 18 17 15 32 32 H 1.09001 * 113.52910 * 320.62629 * 20 17 15 33 33 H 1.08999 * 113.52539 * 91.18033 * 20 17 15 34 34 H 1.08994 * 110.61044 * 347.03869 * 21 19 18 35 35 H 1.08996 * 110.60881 * 109.86750 * 21 19 18 36 36 H 1.09007 * 110.35346 * 142.61086 * 22 21 19 37 37 H 1.09001 * 110.35736 * 264.89836 * 22 21 19 38 38 H 1.09001 * 110.43702 * 280.46154 * 24 23 22 39 39 H 1.08996 * 110.43694 * 157.95544 * 24 23 22 40 40 H 1.07999 * 120.11435 * 0.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0099 -1.2013 0.0005 8 1 1.4700 -2.1367 0.0005 9 16 3.7720 -1.2013 0.0012 10 6 4.0779 -2.9295 0.1571 11 6 4.2937 -3.7040 -0.9795 12 6 4.5283 -5.0602 -0.8620 13 6 4.5559 -5.6559 0.3835 14 6 4.3469 -4.8877 1.5305 15 6 4.3767 -5.5240 2.8649 16 8 4.0755 -4.8811 3.8516 17 7 4.7378 -6.8167 2.9871 18 6 5.2435 -7.8638 2.0827 19 6 5.8870 -8.5134 3.3018 20 6 4.7927 -7.8007 4.0820 21 6 7.3304 -8.1074 3.6187 22 6 8.0484 -9.4620 3.8343 23 8 7.2509 -10.4246 3.1088 24 6 5.8743 -10.0448 3.3455 25 6 4.1100 -3.5186 1.4139 26 1 -0.4851 0.8400 -0.0004 27 1 4.2729 -3.2439 -1.9564 28 1 4.6902 -5.6569 -1.7474 29 1 4.7392 -6.7167 0.4704 30 1 4.4557 -8.4680 1.6328 31 1 5.9644 -7.4967 1.3521 32 1 5.1356 -7.3808 5.0277 33 1 3.8796 -8.3866 4.1867 34 1 7.7706 -7.5691 2.7795 35 1 7.3685 -7.5018 4.5242 36 1 9.0593 -9.4241 3.4283 37 1 8.0741 -9.7129 4.8947 38 1 5.5457 -10.3950 4.3241 39 1 5.2296 -10.4426 2.5619 40 1 3.9473 -2.9194 2.2976 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335723009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:36 Heat of formation + Delta-G solvation = -6.411647 kcal Electronic energy + Delta-G solvation = -23585.159946 eV Core-core repulsion = 20071.737400 eV Total energy + Delta-G solvation = -3513.422547 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.54460 -39.45294 -38.02227 -37.18449 -32.50616 -32.12756 -30.94776 -30.67170 -29.77787 -26.71194 -26.53932 -25.68717 -23.31235 -23.06201 -22.30511 -20.17347 -19.38293 -18.11682 -17.17959 -16.94674 -16.48929 -16.17317 -15.89797 -15.48738 -15.24085 -15.07322 -14.68251 -14.42872 -14.07274 -13.72758 -13.49147 -13.38730 -12.93859 -12.84554 -12.54036 -12.35160 -12.08467 -11.95684 -11.77043 -11.41852 -11.32962 -11.19332 -11.09859 -10.79638 -10.58548 -10.23173 -9.97326 -9.79198 -9.25813 -9.05421 -8.97179 -8.65009 -8.17686 -7.14077 -6.33285 -4.09197 1.07667 1.56711 2.54083 2.85650 2.98416 3.24704 3.39318 3.40455 3.48667 3.72109 3.95072 4.09708 4.24340 4.25841 4.46108 4.51722 4.70038 4.88346 4.94306 4.95548 5.01654 5.04311 5.05677 5.11895 5.16174 5.19966 5.28283 5.32003 5.33846 5.43399 5.53568 5.63816 5.68458 5.77135 5.97869 6.16179 6.30242 6.50434 6.55245 6.80685 7.09404 7.51997 7.90663 8.15261 8.43715 9.10145 10.76099 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.002732 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.407768 B =10246.797913 C =10504.526380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.095 3.905 3 Si 0.854 3.146 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.235 1.235 7 C -0.508 4.508 8 H 0.091 0.909 9 S -0.113 6.113 10 C -0.084 4.084 11 C -0.051 4.051 12 C -0.141 4.141 13 C -0.095 4.095 14 C -0.148 4.148 15 C 0.594 3.406 16 O -0.530 6.530 17 N -0.646 5.646 18 C 0.111 3.889 19 C -0.135 4.135 20 C 0.121 3.879 21 C -0.128 4.128 22 C 0.046 3.954 23 O -0.374 6.374 24 C 0.064 3.936 25 C -0.017 4.017 26 H 0.272 0.728 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.098 0.902 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.631 -20.769 4.484 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.114 4.114 3 Si 0.678 3.322 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.159 1.159 7 C -0.655 4.655 8 H 0.109 0.891 9 S 0.121 5.879 10 C -0.195 4.195 11 C -0.073 4.073 12 C -0.160 4.160 13 C -0.114 4.114 14 C -0.153 4.153 15 C 0.386 3.614 16 O -0.406 6.406 17 N -0.382 5.382 18 C -0.012 4.012 19 C -0.136 4.136 20 C -0.001 4.001 21 C -0.165 4.165 22 C -0.031 4.031 23 O -0.292 6.292 24 C -0.013 4.013 25 C -0.038 4.038 26 H 0.082 0.918 27 H 0.151 0.849 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 15.010 -19.278 4.794 24.898 hybrid contribution -0.998 -0.083 0.150 1.013 sum 14.012 -19.360 4.944 24.405 Atomic orbital electron populations 1.69923 1.05858 1.27820 1.47644 1.24740 0.94516 0.98844 0.93266 0.86784 0.81993 0.83524 0.79867 1.19173 1.19689 1.15893 1.22248 0.86711 0.97719 1.58832 0.89101 1.83033 1.11297 0.97743 1.95791 1.22166 1.02298 1.01012 0.94033 1.21927 0.93483 0.93094 0.98747 1.21076 1.02831 0.95090 0.97038 1.21638 0.97962 0.99621 0.92186 1.19730 1.08810 0.94788 0.91961 1.17962 0.75414 0.78993 0.89018 1.90796 1.48519 1.61790 1.39537 1.49477 1.67138 1.08410 1.13172 1.23140 0.97225 0.86950 0.93880 1.22766 0.96148 0.96221 0.98452 1.22767 0.97048 0.87405 0.92903 1.22575 0.92288 0.98164 1.03517 1.23519 0.95923 0.86930 0.96712 1.89196 1.16405 1.51759 1.71880 1.23134 0.84838 0.91183 1.02168 1.21883 0.91314 0.92542 0.98091 0.91793 0.84885 0.85618 0.85408 0.88989 0.89190 0.89880 0.89327 0.89836 0.89714 0.88847 0.92027 0.91258 0.88354 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.51 13.97 55.49 0.77 -25.73 16 2 C 0.10 2.77 5.50 -17.46 -0.10 2.67 16 3 Si 0.85 21.03 27.74 -169.99 -4.71 16.31 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.23 -5.64 6.74 56.52 0.38 -5.26 16 7 C -0.51 -14.69 10.00 30.91 0.31 -14.38 16 8 H 0.09 2.86 8.02 -52.48 -0.42 2.44 16 9 S -0.11 -2.75 19.38 -107.50 -2.08 -4.83 16 10 C -0.08 -1.77 5.45 -38.99 -0.21 -1.99 16 11 C -0.05 -0.90 9.79 -39.25 -0.38 -1.29 16 12 C -0.14 -1.99 10.02 -39.67 -0.40 -2.39 16 13 C -0.10 -1.33 9.15 -39.12 -0.36 -1.68 16 14 C -0.15 -2.54 5.87 -105.00 -0.62 -3.16 16 15 C 0.59 9.96 8.01 -12.32 -0.10 9.86 16 16 O -0.53 -10.91 17.14 5.32 0.09 -10.82 16 17 N -0.65 -7.69 3.67 -186.48 -0.68 -8.37 16 18 C 0.11 0.88 5.38 -7.57 -0.04 0.83 16 19 C -0.13 -0.92 1.28 -155.05 -0.20 -1.12 16 20 C 0.12 1.05 7.95 -7.70 -0.06 0.99 16 21 C -0.13 -0.86 6.63 -25.65 -0.17 -1.03 16 22 C 0.05 0.28 7.67 38.11 0.29 0.57 16 23 O -0.37 -3.00 11.66 -35.23 -0.41 -3.42 16 24 C 0.06 0.37 7.11 37.26 0.26 0.64 16 25 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 26 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 28 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.13 1.32 4.17 -52.48 -0.22 1.10 16 30 H 0.09 0.56 7.99 -51.93 -0.41 0.15 16 31 H 0.09 0.68 6.64 -51.93 -0.34 0.34 16 32 H 0.08 0.75 7.94 -51.93 -0.41 0.34 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.59 7.88 -51.93 -0.41 0.18 16 35 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 39 H 0.10 0.45 7.88 -51.93 -0.41 0.04 16 40 H 0.14 3.06 7.66 -52.49 -0.40 2.66 16 LS Contribution 346.66 15.07 5.22 5.22 Total: -1.00 -34.72 346.66 -9.07 -43.78 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -5.13 Total: 0.03 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -2.13 Total: -12.18 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.09 Total: -34.10 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.32 Total: -14.24 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.31 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.08 Total: -4.83 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.72 -9.07 -43.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335723009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.372 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds