Wall clock time and date at job start Tue Mar 31 2020 12:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99513 * 2 1 4 4 H 1.48496 * 109.46888 * 269.99627 * 3 2 1 5 5 H 1.48497 * 109.47231 * 30.00227 * 3 2 1 6 6 H 1.48509 * 109.46767 * 150.00187 * 3 2 1 7 7 C 1.38722 * 120.00525 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99964 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00424 * 180.02562 * 7 2 1 10 10 C 1.76196 * 99.99936 * 174.86252 * 9 7 2 11 11 C 1.39222 * 120.02325 * 94.56358 * 10 9 7 12 12 C 1.38140 * 120.20457 * 180.27575 * 11 10 9 13 13 C 1.38086 * 120.23839 * 359.72446 * 12 11 10 14 14 C 1.39624 * 120.04422 * 359.97438 * 13 12 11 15 15 C 1.47863 * 120.10397 * 180.02562 * 14 13 12 16 16 O 1.21557 * 119.99668 * 186.68475 * 15 14 13 17 17 N 1.34775 * 120.00007 * 6.67956 * 15 14 13 18 18 C 1.47314 * 135.89726 * 5.16814 * 17 15 14 19 19 C 1.52388 * 87.52599 * 154.11247 * 18 17 15 20 20 C 1.47318 * 135.89640 * 185.53453 * 17 15 14 21 21 C 1.53247 * 116.75973 * 268.23420 * 19 18 17 22 22 C 1.54814 * 103.52244 * 228.52881 * 21 19 18 23 23 O 1.44535 * 104.88692 * 23.75923 * 22 21 19 24 24 C 1.44749 * 105.53980 * 320.32694 * 23 22 21 25 25 C 1.38841 * 120.02165 * 274.26210 * 10 9 7 26 26 H 0.97003 * 120.00568 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.90072 * 359.97438 * 11 10 9 28 28 H 1.07992 * 119.88131 * 179.69964 * 12 11 10 29 29 H 1.08005 * 119.97371 * 179.97438 * 13 12 11 30 30 H 1.09003 * 113.53081 * 268.75589 * 18 17 15 31 31 H 1.09006 * 113.52471 * 39.37977 * 18 17 15 32 32 H 1.09001 * 113.52910 * 320.62629 * 20 17 15 33 33 H 1.08999 * 113.52539 * 91.18033 * 20 17 15 34 34 H 1.08994 * 110.61044 * 347.03869 * 21 19 18 35 35 H 1.08996 * 110.60881 * 109.86750 * 21 19 18 36 36 H 1.09007 * 110.35346 * 142.61086 * 22 21 19 37 37 H 1.09001 * 110.35736 * 264.89836 * 22 21 19 38 38 H 1.09001 * 110.43702 * 280.46154 * 24 23 22 39 39 H 1.08996 * 110.43694 * 157.95544 * 24 23 22 40 40 H 1.07999 * 120.11435 * 0.02562 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0099 -1.2013 0.0005 8 1 1.4700 -2.1367 0.0005 9 16 3.7720 -1.2013 0.0012 10 6 4.0779 -2.9295 0.1571 11 6 4.2937 -3.7040 -0.9795 12 6 4.5283 -5.0602 -0.8620 13 6 4.5559 -5.6559 0.3835 14 6 4.3469 -4.8877 1.5305 15 6 4.3767 -5.5240 2.8649 16 8 4.0755 -4.8811 3.8516 17 7 4.7378 -6.8167 2.9871 18 6 5.2435 -7.8638 2.0827 19 6 5.8870 -8.5134 3.3018 20 6 4.7927 -7.8007 4.0820 21 6 7.3304 -8.1074 3.6187 22 6 8.0484 -9.4620 3.8343 23 8 7.2509 -10.4246 3.1088 24 6 5.8743 -10.0448 3.3455 25 6 4.1100 -3.5186 1.4139 26 1 -0.4851 0.8400 -0.0004 27 1 4.2729 -3.2439 -1.9564 28 1 4.6902 -5.6569 -1.7474 29 1 4.7392 -6.7167 0.4704 30 1 4.4557 -8.4680 1.6328 31 1 5.9644 -7.4967 1.3521 32 1 5.1356 -7.3808 5.0277 33 1 3.8796 -8.3866 4.1867 34 1 7.7706 -7.5691 2.7795 35 1 7.3685 -7.5018 4.5242 36 1 9.0593 -9.4241 3.4283 37 1 8.0741 -9.7129 4.8947 38 1 5.5457 -10.3950 4.3241 39 1 5.2296 -10.4426 2.5619 40 1 3.9473 -2.9194 2.2976 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335723009.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:36 Heat of formation + Delta-G solvation = -30.414139 kcal Electronic energy + Delta-G solvation = -23586.200773 eV Core-core repulsion = 20071.737400 eV Total energy + Delta-G solvation = -3514.463373 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.32194 -40.55110 -39.13276 -38.15355 -34.74279 -33.16681 -32.07965 -31.83589 -30.45892 -27.95524 -27.41360 -27.36727 -24.38525 -23.70336 -23.63781 -21.25743 -20.18144 -19.84278 -18.57777 -17.91365 -17.32081 -17.14449 -16.99740 -16.85460 -16.41318 -16.10930 -15.93886 -15.63011 -15.15794 -14.99727 -14.78690 -14.45873 -14.33249 -13.94591 -13.64157 -13.37405 -13.27269 -13.08395 -12.93817 -12.81515 -12.57716 -12.41701 -12.25614 -11.92535 -11.90117 -11.39007 -11.31947 -11.14760 -10.92056 -10.62121 -10.15168 -9.82896 -9.76918 -9.16495 -8.55931 -6.30691 -0.26608 0.14908 1.04522 1.28362 1.42797 1.55946 1.60951 1.76609 2.20121 2.53907 2.82196 2.85915 2.91789 3.15524 3.30870 3.49145 3.75736 3.87794 3.94937 4.00980 4.21916 4.24665 4.31022 4.37046 4.40870 4.45658 4.48805 4.56621 4.67621 4.75211 4.79936 4.82695 4.88275 4.91539 5.03520 5.11078 5.17697 5.23911 5.38706 5.66275 5.78716 5.84652 6.07327 6.48027 6.85980 6.94406 8.57724 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.029087 B = 0.002732 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.407768 B =10246.797913 C =10504.526380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.040 3.960 3 Si 0.920 3.080 4 H -0.253 1.253 5 H -0.260 1.260 6 H -0.228 1.228 7 C -0.524 4.524 8 H 0.044 0.956 9 S -0.113 6.113 10 C -0.117 4.117 11 C -0.058 4.058 12 C -0.121 4.121 13 C -0.071 4.071 14 C -0.155 4.155 15 C 0.586 3.414 16 O -0.588 6.588 17 N -0.645 5.645 18 C 0.103 3.897 19 C -0.118 4.118 20 C 0.114 3.886 21 C -0.132 4.132 22 C 0.047 3.953 23 O -0.393 6.393 24 C 0.067 3.933 25 C -0.044 4.044 26 H 0.278 0.722 27 H 0.143 0.857 28 H 0.179 0.821 29 H 0.175 0.825 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.636 -23.795 3.132 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.165 4.165 3 Si 0.740 3.260 4 H -0.177 1.177 5 H -0.184 1.184 6 H -0.152 1.152 7 C -0.671 4.671 8 H 0.063 0.937 9 S 0.121 5.879 10 C -0.228 4.228 11 C -0.079 4.079 12 C -0.140 4.140 13 C -0.089 4.089 14 C -0.159 4.159 15 C 0.378 3.622 16 O -0.469 6.469 17 N -0.378 5.378 18 C -0.018 4.018 19 C -0.119 4.119 20 C -0.008 4.008 21 C -0.169 4.169 22 C -0.029 4.029 23 O -0.312 6.312 24 C -0.010 4.010 25 C -0.066 4.066 26 H 0.088 0.912 27 H 0.161 0.839 28 H 0.197 0.803 29 H 0.192 0.808 30 H 0.142 0.858 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 17.044 -22.379 3.427 28.338 hybrid contribution -1.564 0.542 0.608 1.763 sum 15.480 -21.837 4.035 27.070 Atomic orbital electron populations 1.70031 1.07667 1.29244 1.48852 1.25745 0.95446 1.02687 0.92589 0.85802 0.80847 0.78640 0.80733 1.17684 1.18440 1.15176 1.22376 0.89872 0.96167 1.58692 0.93723 1.82568 1.07108 1.02288 1.95965 1.22056 1.05896 0.99110 0.95721 1.22127 0.93297 0.94711 0.97778 1.21608 0.99812 0.93611 0.98962 1.22157 0.94656 1.01396 0.90688 1.19887 1.08543 0.93645 0.93860 1.17932 0.75593 0.80568 0.88114 1.90758 1.51526 1.63697 1.40942 1.49544 1.64692 1.07546 1.16059 1.23584 0.98357 0.85642 0.94249 1.22599 0.95263 0.97092 0.96973 1.23097 0.98932 0.86642 0.92101 1.22604 0.92562 0.98595 1.03172 1.23576 0.96065 0.86040 0.97222 1.89185 1.17447 1.52288 1.72305 1.23253 0.84330 0.89755 1.03707 1.21628 0.93855 0.94330 0.96778 0.91224 0.83940 0.80324 0.80803 0.85758 0.88068 0.90877 0.87067 0.90097 0.90360 0.88062 0.91168 0.90022 0.86458 0.87707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.87 13.97 21.63 0.30 -57.57 16 2 C 0.04 2.43 5.50 84.84 0.47 2.89 16 3 Si 0.92 44.35 27.74 68.60 1.90 46.26 16 4 H -0.25 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.23 -10.67 6.74 99.48 0.67 -10.00 16 7 C -0.52 -31.97 10.00 67.94 0.68 -31.29 16 8 H 0.04 3.02 8.02 -2.91 -0.02 3.00 16 9 S -0.11 -5.73 19.38 -56.49 -1.09 -6.82 16 10 C -0.12 -5.07 5.45 22.65 0.12 -4.95 16 11 C -0.06 -1.97 9.79 22.48 0.22 -1.75 16 12 C -0.12 -2.91 10.02 22.21 0.22 -2.69 16 13 C -0.07 -1.71 9.15 22.57 0.21 -1.50 16 14 C -0.15 -5.27 5.87 -20.11 -0.12 -5.39 16 15 C 0.59 19.80 8.01 86.79 0.69 20.49 16 16 O -0.59 -25.66 17.14 -3.90 -0.07 -25.73 16 17 N -0.64 -14.06 3.67 -862.19 -3.16 -17.23 16 18 C 0.10 1.16 5.38 83.65 0.45 1.61 16 19 C -0.12 -1.21 1.28 -52.52 -0.07 -1.28 16 20 C 0.11 1.71 7.95 83.56 0.66 2.38 16 21 C -0.13 -1.46 6.63 31.30 0.21 -1.26 16 22 C 0.05 0.45 7.67 72.60 0.56 1.01 16 23 O -0.39 -4.96 11.66 -148.98 -1.74 -6.70 16 24 C 0.07 0.50 7.11 72.05 0.51 1.01 16 25 C -0.04 -1.89 9.34 22.70 0.21 -1.68 16 26 H 0.28 16.04 8.31 -92.71 -0.77 15.27 16 27 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 28 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 29 H 0.18 2.55 4.17 -2.91 -0.01 2.54 16 30 H 0.12 0.74 7.99 -2.39 -0.02 0.72 16 31 H 0.10 0.99 6.64 -2.38 -0.02 0.97 16 32 H 0.07 1.27 7.94 -2.39 -0.02 1.25 16 33 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 0.95 7.88 -2.39 -0.02 0.93 16 35 H 0.08 0.98 7.85 -2.39 -0.02 0.96 16 36 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.08 0.45 8.13 -2.39 -0.02 0.43 16 39 H 0.12 0.47 7.88 -2.39 -0.02 0.45 16 40 H 0.10 5.11 7.66 -2.91 -0.02 5.09 16 Total: -1.00 -83.33 346.66 2.20 -81.13 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.02 Total: 9.04 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 5.03 Total: -22.39 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -2.86 Total: -74.79 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.80 Total: -32.43 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.26 kcal Atomic # 16 Polarization: -5.73 SS G_CDS: -1.09 Total: -6.82 kcal Total: -83.33 2.20 -81.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335723009.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.721 kcal (2) G-P(sol) polarization free energy of solvation -83.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds