Wall clock time and date at job start Tue Mar 31 2020 12:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39370 * 119.50990 * 2 1 4 4 C 1.36097 * 120.99268 * 180.02562 * 3 2 1 5 5 C 1.40546 * 119.65285 * 359.97438 * 4 3 2 6 6 C 1.40536 * 121.28793 * 180.27156 * 5 4 3 7 7 C 1.36087 * 119.65428 * 180.25347 * 6 5 4 8 8 S 1.76197 * 119.50764 * 179.77536 * 7 6 5 9 9 O 1.42101 * 106.40487 * 156.18430 * 8 7 6 10 10 O 1.42106 * 106.40322 * 23.26221 * 8 7 6 11 11 N 1.65605 * 107.21776 * 269.72323 * 8 7 6 12 12 C 1.46497 * 120.00032 * 65.00008 * 11 8 7 13 13 H 1.09007 * 109.47078 * 24.99629 * 12 11 8 14 14 C 1.53000 * 109.47021 * 265.00209 * 12 11 8 15 15 C 1.50694 * 109.47115 * 144.99990 * 12 11 8 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.39383 * 120.98795 * 359.49176 * 7 6 5 24 24 C 1.36092 * 120.98571 * 0.23970 * 23 7 6 25 25 C 1.40535 * 119.65450 * 0.02562 * 24 23 7 26 26 C 1.36099 * 119.50236 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47278 * 89.99418 * 1 2 3 28 28 H 1.08999 * 109.47170 * 209.99652 * 1 2 3 29 29 H 1.09003 * 109.46491 * 329.99864 * 1 2 3 30 30 H 1.08002 * 119.50379 * 0.02562 * 3 2 1 31 31 H 1.07994 * 120.17144 * 180.02562 * 4 3 2 32 32 H 1.08001 * 120.17479 * 0.02562 * 6 5 4 33 33 H 0.96997 * 119.99799 * 244.99417 * 11 8 7 34 34 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 35 35 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 36 36 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 38 38 H 1.07995 * 119.50330 * 180.25842 * 23 7 6 39 39 H 1.07996 * 120.17059 * 180.02562 * 24 23 7 40 40 H 1.07995 * 120.17532 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.2129 0.0000 4 6 3.5540 1.2481 -0.0005 5 6 4.2807 0.0451 -0.0005 6 6 5.6860 0.0414 0.0046 7 6 6.3562 -1.1430 -0.0008 8 16 8.1182 -1.1432 -0.0003 9 8 8.5193 -2.3929 0.5444 10 8 8.5195 0.1066 0.5441 11 7 8.6088 -1.1434 -1.5820 12 6 8.3139 0.0064 -2.4406 13 1 8.1897 0.8973 -1.8248 14 6 7.0248 -0.2576 -3.2213 15 6 9.4516 0.2174 -3.4059 16 1 10.3089 -0.4389 -3.3820 17 6 9.3985 1.2492 -4.3190 18 7 8.3548 2.0488 -4.3478 19 14 10.8092 1.5112 -5.5152 20 1 10.5101 2.6767 -6.3856 21 1 12.0601 1.7672 -4.7569 22 1 10.9785 0.2979 -6.3543 23 6 5.6697 -2.3561 -0.0008 24 6 4.3092 -2.3911 -0.0002 25 6 3.5826 -1.1882 -0.0002 26 6 2.1772 -1.1845 -0.0005 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5139 30 1 1.6374 2.1388 0.0004 31 1 4.0724 2.1955 -0.0001 32 1 6.2314 0.9736 0.0091 33 1 9.0916 -1.9048 -1.9399 34 1 6.2019 -0.4103 -2.5230 35 1 6.8051 0.5980 -3.8598 36 1 7.1489 -1.1485 -3.8370 37 1 8.3177 2.7749 -4.9900 38 1 6.2257 -3.2819 -0.0009 39 1 3.7907 -3.3385 0.0002 40 1 1.6320 -2.1167 -0.0005 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336262646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:42 Heat of formation + Delta-G solvation = -42.350958 kcal Electronic energy + Delta-G solvation = -24463.793507 eV Core-core repulsion = 20948.812515 eV Total energy + Delta-G solvation = -3514.980992 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.42040 -36.97354 -36.71875 -35.44399 -35.29786 -33.05323 -32.20094 -31.77799 -29.57327 -28.31133 -27.13316 -25.24712 -23.47530 -22.46435 -22.02571 -20.95663 -19.10847 -17.76631 -17.32837 -17.11371 -16.36669 -16.02704 -15.29516 -15.12837 -14.69773 -14.59650 -14.16597 -13.80064 -13.59081 -13.44613 -13.20299 -13.14430 -12.67656 -12.53575 -12.20266 -12.05155 -11.76213 -11.57451 -11.51980 -11.46973 -11.37578 -11.06591 -10.97433 -10.90472 -10.67749 -10.42123 -10.34230 -10.10054 -10.00315 -9.22906 -8.70455 -8.62158 -8.30761 -7.95731 -6.14023 -4.21029 0.36023 0.82499 1.05265 1.97927 2.74403 3.27607 3.31994 3.34762 3.72033 3.99425 4.30979 4.36444 4.46998 4.62518 4.76699 4.82621 4.99548 5.10261 5.18533 5.19651 5.25839 5.35782 5.37533 5.48439 5.62025 5.72005 5.87100 5.92113 6.13740 6.16934 6.29398 6.32752 6.41684 6.48049 6.75475 6.78068 6.82745 6.93842 6.99182 7.54993 7.65308 7.84442 7.99231 8.25132 8.81213 9.44795 10.92147 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.004279 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.021940 B = 6541.788457 C = 7791.712955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.067 4.067 3 C -0.130 4.130 4 C -0.078 4.078 5 C -0.081 4.081 6 C 0.027 3.973 7 C -0.667 4.667 8 S 2.687 3.313 9 O -0.981 6.981 10 O -0.962 6.962 11 N -1.098 6.098 12 C 0.268 3.732 13 H 0.050 0.950 14 C -0.160 4.160 15 C -0.522 4.522 16 H 0.064 0.936 17 C 0.065 3.935 18 N -0.889 5.889 19 Si 0.902 3.098 20 H -0.286 1.286 21 H -0.275 1.275 22 H -0.276 1.276 23 C -0.033 4.033 24 C -0.132 4.132 25 C -0.008 4.008 26 C -0.126 4.126 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.134 0.866 32 H 0.147 0.853 33 H 0.410 0.590 34 H 0.014 0.986 35 H 0.093 0.907 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.371 -4.735 7.433 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.067 4.067 3 C -0.148 4.148 4 C -0.096 4.096 5 C -0.082 4.082 6 C 0.008 3.992 7 C -0.752 4.752 8 S 2.776 3.224 9 O -0.971 6.971 10 O -0.952 6.952 11 N -0.859 5.859 12 C 0.164 3.836 13 H 0.068 0.932 14 C -0.219 4.219 15 C -0.561 4.561 16 H 0.083 0.917 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.729 3.271 20 H -0.212 1.212 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.052 4.052 24 C -0.150 4.150 25 C -0.008 4.008 26 C -0.144 4.144 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.244 0.756 34 H 0.033 0.967 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.036 -4.400 8.150 16.816 hybrid contribution 0.144 -0.140 -1.293 1.308 sum -13.892 -4.540 6.857 16.144 Atomic orbital electron populations 1.20860 0.91090 1.02842 1.02544 1.19703 0.96253 0.93145 0.97628 1.20742 0.94282 0.97537 1.02201 1.21186 0.94307 0.97380 0.96731 1.18168 0.93451 0.93308 1.03307 1.21037 0.93348 0.97628 0.87188 1.30842 1.28535 0.99025 1.16789 1.01937 0.73608 0.73352 0.73535 1.93515 1.81527 1.44163 1.77866 1.93573 1.80128 1.44099 1.77357 1.55513 1.70533 1.29839 1.30025 1.18621 0.94119 0.81783 0.89046 0.93186 1.22308 0.96484 1.02610 1.00505 1.21184 1.03653 1.14499 1.16799 0.91733 1.24906 0.96208 0.95452 0.97257 1.69850 1.28685 1.17560 1.36595 0.86498 0.82298 0.77661 0.80604 1.21187 1.20069 1.20192 1.20426 0.94654 0.96257 0.93844 1.20974 0.94168 0.96983 1.02923 1.18188 0.93406 0.93048 0.96196 1.20879 0.92626 0.97997 1.02852 0.90889 0.91473 0.91385 0.85734 0.84775 0.83501 0.75617 0.96746 0.88825 0.94708 0.92536 0.84557 0.85158 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 9.98 36.00 0.36 -0.50 16 2 C -0.07 -0.72 5.84 -104.97 -0.61 -1.33 16 3 C -0.13 -1.45 9.58 -39.93 -0.38 -1.83 16 4 C -0.08 -1.02 9.77 -39.48 -0.39 -1.40 16 5 C -0.08 -1.24 5.74 -106.83 -0.61 -1.85 16 6 C 0.03 0.46 8.28 -39.49 -0.33 0.13 16 7 C -0.67 -11.40 5.04 -39.93 -0.20 -11.60 16 8 S 2.69 51.32 5.70 -107.50 -0.61 50.71 16 9 O -0.98 -19.38 17.23 -57.17 -0.99 -20.37 16 10 O -0.96 -21.07 16.54 -57.17 -0.95 -22.02 16 11 N -1.10 -22.11 5.46 -5.88 -0.03 -22.14 16 12 C 0.27 6.37 2.89 -69.09 -0.20 6.17 16 13 H 0.05 1.29 7.50 -51.92 -0.39 0.90 16 14 C -0.16 -3.61 9.29 37.16 0.35 -3.26 16 15 C -0.52 -13.63 8.76 -34.44 -0.30 -13.93 16 16 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 18 N -0.89 -24.06 11.32 55.43 0.63 -23.43 16 19 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 C -0.03 -0.50 9.42 -39.93 -0.38 -0.87 16 24 C -0.13 -1.77 9.77 -39.49 -0.39 -2.16 16 25 C -0.01 -0.12 5.74 -106.83 -0.61 -0.73 16 26 C -0.13 -1.45 9.37 -39.48 -0.37 -1.82 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.42 8.07 -51.93 -0.42 0.01 16 29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.15 2.43 7.54 -52.49 -0.40 2.04 16 33 H 0.41 7.47 8.83 -34.47 -0.30 7.17 16 34 H 0.01 0.28 6.17 -51.93 -0.32 -0.04 16 35 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.14 1.84 7.57 -52.49 -0.40 1.45 16 39 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 346.36 15.07 5.22 5.22 Total: -1.00 -31.59 346.36 -10.95 -42.54 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.04 Total: 7.33 kcal Atomic # 6 Polarization: -29.22 SS G_CDS: -4.16 Total: -33.38 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.60 Total: -45.57 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -1.93 Total: -42.38 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 51.32 SS G_CDS: -0.61 Total: 50.71 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.59 -10.95 -42.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336262646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.186 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds