Wall clock time and date at job start Tue Mar 31 2020 12:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99480 * 2 1 4 4 C 1.52997 * 109.46974 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47287 * 65.00467 * 4 3 2 6 6 C 1.36962 * 119.99767 * 273.93436 * 5 4 3 7 7 H 1.08003 * 120.00483 * 126.33312 * 6 5 4 8 8 C 1.38965 * 120.00020 * 306.33262 * 6 5 4 9 9 N 1.31427 * 119.99960 * 3.95211 * 8 6 5 10 10 Si 1.86801 * 120.00082 * 183.95137 * 8 6 5 11 11 H 1.48500 * 109.47260 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47181 * 120.00372 * 10 8 6 13 13 H 1.48501 * 109.46998 * 240.00329 * 10 8 6 14 14 C 1.34775 * 120.00541 * 93.92639 * 5 4 3 15 15 O 1.21721 * 119.99362 * 1.50770 * 14 5 4 16 16 C 1.46726 * 120.00308 * 181.50133 * 14 5 4 17 17 C 1.34011 * 123.04469 * 349.46320 * 16 14 5 18 18 S 1.70024 * 112.23366 * 179.97438 * 17 16 14 19 19 C 1.75807 * 93.00759 * 0.02562 * 18 17 16 20 20 C 1.39832 * 130.50212 * 179.97438 * 19 18 17 21 21 C 1.37506 * 120.30715 * 180.31822 * 20 19 18 22 22 C 1.50701 * 119.89717 * 179.70031 * 21 20 19 23 23 C 1.38761 * 120.20734 * 359.38210 * 21 20 19 24 24 C 1.37288 * 120.33158 * 0.64680 * 23 21 20 25 25 C 1.39430 * 109.79783 * 359.97438 * 19 18 17 26 26 H 1.08998 * 109.47770 * 299.99387 * 1 2 3 27 27 H 1.08996 * 109.47220 * 60.00282 * 1 2 3 28 28 H 1.09005 * 109.46511 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47010 * 60.00115 * 3 2 1 30 30 H 1.08989 * 109.47315 * 299.99832 * 3 2 1 31 31 H 1.09004 * 109.47550 * 305.00191 * 4 3 2 32 32 H 1.09003 * 109.47011 * 185.00136 * 4 3 2 33 33 H 0.96998 * 119.99687 * 179.97438 * 9 8 6 34 34 H 1.08003 * 123.88263 * 0.02562 * 17 16 14 35 35 H 1.08005 * 119.84718 * 0.04012 * 20 19 18 36 36 H 1.08996 * 109.46986 * 89.99632 * 22 21 20 37 37 H 1.09001 * 109.47110 * 209.99584 * 22 21 20 38 38 H 1.09000 * 109.46645 * 330.00053 * 22 21 20 39 39 H 1.08000 * 119.82933 * 180.29495 * 23 21 20 40 40 H 1.08006 * 119.86248 * 179.68574 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1849 0.0006 5 7 3.9766 0.5643 -1.2509 6 6 4.0207 -0.8002 -1.3603 7 1 3.5095 -1.2936 -2.1738 8 6 4.7232 -1.5500 -0.4247 9 7 5.2799 -0.9576 0.6080 10 14 4.8762 -3.3999 -0.6346 11 1 4.1652 -3.8184 -1.8693 12 1 6.3106 -3.7692 -0.7395 13 1 4.2737 -4.0827 0.5384 14 6 4.3391 1.3360 -2.2947 15 8 4.3260 2.5485 -2.1884 16 6 4.7496 0.7147 -3.5589 17 6 4.9843 -0.5986 -3.6853 18 16 5.4422 -1.0210 -5.2673 19 6 5.3290 0.6367 -5.8418 20 6 5.5613 1.1760 -7.1108 21 6 5.4139 2.5256 -7.3289 22 6 5.6733 3.0979 -8.6987 23 6 5.0207 3.3613 -6.2933 24 6 4.7886 2.8505 -5.0403 25 6 4.9397 1.4732 -4.7964 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6884 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8507 0.5687 0.8427 32 1 3.9782 2.1768 0.0902 33 1 5.7700 -1.4810 1.2613 34 1 4.8922 -1.3074 -2.8756 35 1 5.8623 0.5301 -7.9225 36 1 4.7497 3.0880 -9.2774 37 1 6.0307 4.1231 -8.6024 38 1 6.4270 2.4965 -9.2069 39 1 4.9022 4.4197 -6.4726 40 1 4.4878 3.5087 -4.2385 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457206071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:28 Heat of formation + Delta-G solvation = -22.192734 kcal Electronic energy + Delta-G solvation = -24654.003559 eV Core-core repulsion = 21139.896693 eV Total energy + Delta-G solvation = -3514.106866 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.56945 -38.43186 -36.96284 -34.88878 -34.78020 -31.75305 -31.20796 -30.48086 -28.96536 -26.32436 -25.72141 -25.26052 -23.73916 -22.08206 -21.71364 -20.42751 -19.05761 -17.76815 -16.66363 -15.98981 -15.64431 -15.31468 -15.16170 -14.95323 -14.48648 -14.36719 -13.98579 -13.80761 -13.79172 -13.40127 -13.08111 -12.91383 -12.47966 -12.16453 -12.04378 -11.87877 -11.66097 -11.42036 -11.26171 -11.16798 -11.07987 -10.96014 -10.59486 -10.45189 -10.41224 -10.17944 -10.11425 -9.09035 -9.05790 -8.97678 -8.52115 -7.96372 -7.45399 -7.13404 -6.42705 -4.29303 1.23092 1.60385 2.05068 2.44781 2.61341 3.06810 3.14842 3.16344 3.91604 3.99618 4.48807 4.50887 4.70636 4.92235 4.99905 5.14885 5.32888 5.38871 5.62268 5.64949 5.68196 5.73173 5.82938 5.92723 5.96612 6.00424 6.05824 6.11374 6.30207 6.32084 6.42353 6.47605 6.60815 6.71915 6.82703 6.95166 7.07168 7.20443 7.29924 7.40449 7.84534 8.02843 8.24367 8.93033 9.40626 9.84078 10.55343 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.004931 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.664833 B = 5677.130608 C = 6842.875610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.055 3.945 4 C 0.111 3.889 5 N -0.425 5.425 6 C -0.324 4.324 7 H 0.094 0.906 8 C 0.054 3.946 9 N -0.854 5.854 10 Si 0.904 3.096 11 H -0.262 1.262 12 H -0.275 1.275 13 H -0.274 1.274 14 C 0.538 3.462 15 O -0.603 6.603 16 C -0.124 4.124 17 C -0.176 4.176 18 S 0.085 5.915 19 C -0.155 4.155 20 C -0.089 4.089 21 C -0.088 4.088 22 C -0.107 4.107 23 C -0.129 4.129 24 C -0.064 4.064 25 C -0.037 4.037 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.273 0.727 34 H 0.227 0.773 35 H 0.119 0.881 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.122 0.878 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.244 1.491 -9.304 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C -0.023 4.023 4 C -0.013 4.013 5 N -0.142 5.142 6 C -0.453 4.453 7 H 0.111 0.889 8 C -0.154 4.154 9 N -0.489 5.489 10 Si 0.729 3.271 11 H -0.186 1.186 12 H -0.201 1.201 13 H -0.200 1.200 14 C 0.326 3.674 15 O -0.490 6.490 16 C -0.139 4.139 17 C -0.311 4.311 18 S 0.352 5.648 19 C -0.270 4.270 20 C -0.111 4.111 21 C -0.091 4.091 22 C -0.164 4.164 23 C -0.149 4.149 24 C -0.083 4.083 25 C -0.046 4.046 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.242 0.758 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.140 0.860 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.654 0.437 -9.643 9.794 hybrid contribution -0.597 0.555 0.869 1.192 sum -2.252 0.992 -8.774 9.112 Atomic orbital electron populations 1.22642 0.83596 1.01708 0.98741 1.88167 1.17169 1.27530 1.94989 1.23009 0.96523 0.84399 0.98391 1.21603 0.89251 0.99220 0.91217 1.43043 1.55404 1.05751 1.09994 1.19319 1.31295 0.81055 1.13672 0.88906 1.25603 0.94592 1.00036 0.95167 1.69701 1.31823 1.36630 1.10733 0.86226 0.78583 0.82879 0.79446 1.18580 1.20060 1.19959 1.17758 0.79514 0.86048 0.84032 1.90583 1.59917 1.14168 1.84349 1.19626 1.07610 0.92592 0.94063 1.27631 1.00306 1.02538 1.00592 1.82838 1.71957 1.05685 1.04309 1.22711 1.08390 0.98008 0.97848 1.20168 1.02456 0.94452 0.94031 1.19652 1.00497 0.93036 0.95910 1.20720 1.01609 1.00852 0.93215 1.20821 1.02122 0.99359 0.92595 1.21238 0.96539 0.93547 0.97008 1.19006 1.00323 0.93983 0.91240 0.95225 0.95099 0.90442 0.94289 0.94499 0.86606 0.90883 0.91680 0.75817 0.86272 0.91474 0.91660 0.91844 0.86042 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.58 9.99 -35.23 -0.35 -7.93 16 3 C 0.05 1.12 6.28 37.16 0.23 1.35 16 4 C 0.11 2.59 5.55 -4.04 -0.02 2.57 16 5 N -0.42 -10.60 2.45 -116.27 -0.28 -10.88 16 6 C -0.32 -7.92 5.36 -14.99 -0.08 -8.00 16 7 H 0.09 2.24 6.13 -52.48 -0.32 1.92 16 8 C 0.05 1.31 5.29 -17.46 -0.09 1.22 16 9 N -0.85 -21.75 11.27 55.50 0.63 -21.12 16 10 Si 0.90 18.61 29.03 -169.99 -4.93 13.68 16 11 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 14 C 0.54 13.58 7.60 -12.83 -0.10 13.48 16 15 O -0.60 -15.90 14.49 5.17 0.07 -15.82 16 16 C -0.12 -2.85 5.89 -104.68 -0.62 -3.46 16 17 C -0.18 -3.71 8.96 29.25 0.26 -3.45 16 18 S 0.09 1.49 22.98 -107.50 -2.47 -0.98 16 19 C -0.15 -2.84 6.47 -38.54 -0.25 -3.09 16 20 C -0.09 -1.36 9.71 -39.25 -0.38 -1.75 16 21 C -0.09 -1.25 5.87 -104.70 -0.61 -1.87 16 22 C -0.11 -1.08 10.00 36.01 0.36 -0.72 16 23 C -0.13 -1.99 9.67 -39.73 -0.38 -2.37 16 24 C -0.06 -1.22 9.60 -39.00 -0.37 -1.59 16 25 C -0.04 -0.77 6.02 -105.25 -0.63 -1.41 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.77 8.14 -51.94 -0.42 0.35 16 31 H 0.12 2.90 5.79 -51.93 -0.30 2.60 16 32 H 0.07 1.72 7.29 -51.93 -0.38 1.34 16 33 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 34 H 0.23 4.93 3.49 -52.49 -0.18 4.75 16 35 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 38 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.14 2.85 6.52 -52.48 -0.34 2.50 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -28.72 343.46 -8.63 -37.35 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -4.88 Total: 8.03 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.58 Total: -7.49 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.34 Total: -32.00 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.28 Total: -23.75 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -4.93 Total: 13.68 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.47 Total: -0.98 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.72 -8.63 -37.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.154 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds