Wall clock time and date at job start Tue Mar 31 2020 12:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99480 * 2 1 4 4 C 1.52997 * 109.46974 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47287 * 65.00467 * 4 3 2 6 6 C 1.36962 * 119.99767 * 273.93436 * 5 4 3 7 7 H 1.08003 * 120.00483 * 126.33312 * 6 5 4 8 8 C 1.38965 * 120.00020 * 306.33262 * 6 5 4 9 9 N 1.31427 * 119.99960 * 3.95211 * 8 6 5 10 10 Si 1.86801 * 120.00082 * 183.95137 * 8 6 5 11 11 H 1.48500 * 109.47260 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47181 * 120.00372 * 10 8 6 13 13 H 1.48501 * 109.46998 * 240.00329 * 10 8 6 14 14 C 1.34775 * 120.00541 * 93.92639 * 5 4 3 15 15 O 1.21721 * 119.99362 * 1.50770 * 14 5 4 16 16 C 1.46726 * 120.00308 * 181.50133 * 14 5 4 17 17 C 1.34011 * 123.04469 * 349.46320 * 16 14 5 18 18 S 1.70024 * 112.23366 * 179.97438 * 17 16 14 19 19 C 1.75807 * 93.00759 * 0.02562 * 18 17 16 20 20 C 1.39832 * 130.50212 * 179.97438 * 19 18 17 21 21 C 1.37506 * 120.30715 * 180.31822 * 20 19 18 22 22 C 1.50701 * 119.89717 * 179.70031 * 21 20 19 23 23 C 1.38761 * 120.20734 * 359.38210 * 21 20 19 24 24 C 1.37288 * 120.33158 * 0.64680 * 23 21 20 25 25 C 1.39430 * 109.79783 * 359.97438 * 19 18 17 26 26 H 1.08998 * 109.47770 * 299.99387 * 1 2 3 27 27 H 1.08996 * 109.47220 * 60.00282 * 1 2 3 28 28 H 1.09005 * 109.46511 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47010 * 60.00115 * 3 2 1 30 30 H 1.08989 * 109.47315 * 299.99832 * 3 2 1 31 31 H 1.09004 * 109.47550 * 305.00191 * 4 3 2 32 32 H 1.09003 * 109.47011 * 185.00136 * 4 3 2 33 33 H 0.96998 * 119.99687 * 179.97438 * 9 8 6 34 34 H 1.08003 * 123.88263 * 0.02562 * 17 16 14 35 35 H 1.08005 * 119.84718 * 0.04012 * 20 19 18 36 36 H 1.08996 * 109.46986 * 89.99632 * 22 21 20 37 37 H 1.09001 * 109.47110 * 209.99584 * 22 21 20 38 38 H 1.09000 * 109.46645 * 330.00053 * 22 21 20 39 39 H 1.08000 * 119.82933 * 180.29495 * 23 21 20 40 40 H 1.08006 * 119.86248 * 179.68574 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1849 0.0006 5 7 3.9766 0.5643 -1.2509 6 6 4.0207 -0.8002 -1.3603 7 1 3.5095 -1.2936 -2.1738 8 6 4.7232 -1.5500 -0.4247 9 7 5.2799 -0.9576 0.6080 10 14 4.8762 -3.3999 -0.6346 11 1 4.1652 -3.8184 -1.8693 12 1 6.3106 -3.7692 -0.7395 13 1 4.2737 -4.0827 0.5384 14 6 4.3391 1.3360 -2.2947 15 8 4.3260 2.5485 -2.1884 16 6 4.7496 0.7147 -3.5589 17 6 4.9843 -0.5986 -3.6853 18 16 5.4422 -1.0210 -5.2673 19 6 5.3290 0.6367 -5.8418 20 6 5.5613 1.1760 -7.1108 21 6 5.4139 2.5256 -7.3289 22 6 5.6733 3.0979 -8.6987 23 6 5.0207 3.3613 -6.2933 24 6 4.7886 2.8505 -5.0403 25 6 4.9397 1.4732 -4.7964 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.6884 1.8464 0.8900 30 1 1.6885 1.8464 -0.8899 31 1 3.8507 0.5687 0.8427 32 1 3.9782 2.1768 0.0902 33 1 5.7700 -1.4810 1.2613 34 1 4.8922 -1.3074 -2.8756 35 1 5.8623 0.5301 -7.9225 36 1 4.7497 3.0880 -9.2774 37 1 6.0307 4.1231 -8.6024 38 1 6.4270 2.4965 -9.2069 39 1 4.9022 4.4197 -6.4726 40 1 4.4878 3.5087 -4.2385 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457206071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:27 Heat of formation + Delta-G solvation = -37.947655 kcal Electronic energy + Delta-G solvation = -24654.686743 eV Core-core repulsion = 21139.896693 eV Total energy + Delta-G solvation = -3514.790050 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16945 -39.99076 -38.55213 -36.74955 -36.26730 -33.62558 -32.50184 -31.84799 -30.55690 -27.71343 -27.08715 -26.95706 -25.32426 -23.59697 -23.14055 -21.97845 -20.84694 -19.41718 -18.20290 -17.63200 -17.33664 -16.91114 -16.64026 -16.34522 -16.07680 -15.98455 -15.57260 -15.25850 -15.18913 -14.73576 -14.55719 -14.42175 -13.73506 -13.71002 -13.42091 -13.36362 -13.10356 -12.99983 -12.77728 -12.64958 -12.57384 -12.40965 -12.25042 -12.03530 -11.87585 -11.75502 -11.55743 -10.91889 -10.54917 -10.49067 -10.37370 -9.37308 -9.29138 -8.56218 -8.27295 -6.20019 -0.22145 0.27691 0.64899 0.88724 1.07346 1.43036 1.44578 1.55576 2.23841 2.42282 2.84062 2.88927 2.98397 3.15101 3.79163 4.00776 4.02077 4.22995 4.25730 4.37765 4.40739 4.50528 4.51610 4.58926 4.59434 4.64791 4.77238 4.83123 4.90926 4.93154 4.96467 5.06687 5.18229 5.29595 5.31075 5.40107 5.48412 5.60749 5.65328 6.01724 6.08336 6.35461 6.41206 7.04542 7.50636 7.94837 8.71574 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.014069 B = 0.004931 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.664833 B = 5677.130608 C = 6842.875610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.067 3.933 4 C 0.108 3.892 5 N -0.433 5.433 6 C -0.328 4.328 7 H 0.093 0.907 8 C 0.015 3.985 9 N -0.889 5.889 10 Si 0.963 3.037 11 H -0.247 1.247 12 H -0.272 1.272 13 H -0.275 1.275 14 C 0.520 3.480 15 O -0.630 6.630 16 C -0.155 4.155 17 C -0.192 4.192 18 S 0.158 5.842 19 C -0.170 4.170 20 C -0.088 4.088 21 C -0.076 4.076 22 C -0.105 4.105 23 C -0.118 4.118 24 C -0.093 4.093 25 C -0.073 4.073 26 H 0.052 0.948 27 H 0.036 0.964 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.274 0.726 34 H 0.215 0.785 35 H 0.154 0.846 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.151 0.849 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.250 0.572 -12.595 12.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.015 4.015 5 N -0.149 5.149 6 C -0.457 4.457 7 H 0.110 0.890 8 C -0.189 4.189 9 N -0.525 5.525 10 Si 0.785 3.215 11 H -0.170 1.170 12 H -0.197 1.197 13 H -0.200 1.200 14 C 0.310 3.690 15 O -0.520 6.520 16 C -0.170 4.170 17 C -0.328 4.328 18 S 0.425 5.575 19 C -0.285 4.285 20 C -0.110 4.110 21 C -0.079 4.079 22 C -0.161 4.161 23 C -0.138 4.138 24 C -0.113 4.113 25 C -0.081 4.081 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.230 0.770 35 H 0.172 0.828 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.169 0.831 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.680 -0.492 -12.938 13.056 hybrid contribution -0.614 0.924 1.769 2.088 sum -2.293 0.431 -11.169 11.411 Atomic orbital electron populations 1.22880 0.80840 1.03335 1.00087 1.88097 1.20227 1.27514 1.95250 1.22777 0.94399 0.84733 0.99161 1.21549 0.91572 0.97921 0.90480 1.43260 1.55272 1.06217 1.10187 1.19431 1.31557 0.80871 1.13832 0.89001 1.26332 0.94006 1.04026 0.94565 1.69821 1.32843 1.38202 1.11598 0.85324 0.78666 0.77707 0.79786 1.17002 1.19709 1.20032 1.18299 0.79449 0.86023 0.85238 1.90531 1.61204 1.15178 1.85083 1.19693 1.09528 0.93756 0.94052 1.27363 1.00410 1.01702 1.03307 1.82325 1.70377 1.04405 1.00366 1.23016 1.08732 0.98199 0.98543 1.20647 1.01349 0.95553 0.93490 1.20191 0.97770 0.92494 0.97483 1.20826 1.03111 1.01749 0.90443 1.21186 1.00127 1.01128 0.91317 1.21195 0.98958 0.92961 0.98196 1.19093 1.02687 0.95083 0.91199 0.92984 0.94541 0.88739 0.91419 0.95568 0.88249 0.92261 0.91615 0.76967 0.82827 0.89707 0.90180 0.89991 0.83117 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 11.01 113.37 1.25 2.02 16 2 O -0.39 -16.71 9.99 -148.98 -1.49 -18.19 16 3 C 0.07 2.84 6.28 71.98 0.45 3.29 16 4 C 0.11 5.39 5.55 86.38 0.48 5.87 16 5 N -0.43 -22.84 2.45 -639.98 -1.57 -24.40 16 6 C -0.33 -16.66 5.36 84.07 0.45 -16.21 16 7 H 0.09 4.59 6.13 -2.91 -0.02 4.57 16 8 C 0.02 0.76 5.29 84.93 0.45 1.21 16 9 N -0.89 -47.03 11.27 21.67 0.24 -46.79 16 10 Si 0.96 38.40 29.03 68.60 1.99 40.39 16 11 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 12 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 13 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 14 C 0.52 28.01 7.60 86.46 0.66 28.67 16 15 O -0.63 -35.80 14.49 -4.42 -0.06 -35.86 16 16 C -0.15 -7.42 5.89 -19.90 -0.12 -7.54 16 17 C -0.19 -8.27 8.96 66.86 0.60 -7.67 16 18 S 0.16 5.28 22.98 -56.49 -1.30 3.98 16 19 C -0.17 -6.00 6.47 22.94 0.15 -5.85 16 20 C -0.09 -2.41 9.71 22.48 0.22 -2.19 16 21 C -0.08 -1.89 5.87 -19.91 -0.12 -2.01 16 22 C -0.10 -1.56 10.00 71.24 0.71 -0.85 16 23 C -0.12 -3.44 9.67 22.17 0.21 -3.22 16 24 C -0.09 -3.66 9.60 22.64 0.22 -3.44 16 25 C -0.07 -3.11 6.02 -20.27 -0.12 -3.23 16 26 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 5.28 5.79 -2.39 -0.01 5.26 16 32 H 0.06 3.02 7.29 -2.39 -0.02 3.00 16 33 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 34 H 0.21 9.58 3.49 -2.92 -0.01 9.57 16 35 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.01 8.09 -2.39 -0.02 1.00 16 38 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 39 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.11 4.99 6.52 -2.91 -0.02 4.97 16 Total: -1.00 -66.83 343.46 4.38 -62.45 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 1.07 Total: 29.58 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: 5.49 Total: -11.16 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -1.32 Total: -71.19 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -1.55 Total: -54.05 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.99 Total: 40.39 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -1.30 Total: 3.98 kcal Total: -66.83 4.38 -62.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457206071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.501 kcal (2) G-P(sol) polarization free energy of solvation -66.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds