Wall clock time and date at job start Tue Mar 31 2020 12:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46720 * 197.70973 * 3 2 1 5 5 C 1.37107 * 120.00334 * 264.14047 * 4 3 2 6 6 H 1.07999 * 119.99918 * 197.43768 * 5 4 3 7 7 C 1.38953 * 119.99541 * 17.43485 * 5 4 3 8 8 N 1.31411 * 120.00040 * 21.52577 * 7 5 4 9 9 Si 1.86794 * 119.99947 * 201.52197 * 7 5 4 10 10 H 1.48504 * 109.46916 * 60.00309 * 9 7 5 11 11 H 1.48500 * 109.47375 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47068 * 300.00481 * 9 7 5 13 13 C 1.34773 * 120.00183 * 84.13964 * 4 3 2 14 14 O 1.21298 * 120.00489 * 179.97438 * 13 4 3 15 15 C 1.50703 * 120.00161 * 0.02562 * 13 4 3 16 16 C 1.52994 * 109.47400 * 179.97438 * 15 13 4 17 17 C 1.50707 * 109.47176 * 179.97438 * 16 15 13 18 18 O 1.21354 * 119.99902 * 0.02562 * 17 16 15 19 19 C 1.46348 * 120.00031 * 179.97438 * 17 16 15 20 20 C 1.44638 * 123.53255 * 0.03047 * 19 17 16 21 21 C 1.32632 * 113.10404 * 179.97438 * 20 19 17 22 22 C 1.50706 * 124.64808 * 179.97438 * 21 20 19 23 23 S 1.75479 * 110.69902 * 359.97438 * 21 20 19 24 24 C 1.36495 * 123.53268 * 179.73190 * 19 17 16 25 25 C 1.50693 * 124.61466 * 359.97438 * 24 19 17 26 26 H 4.40641 * 5.51460 * 179.97438 * 4 1 2 27 27 H 1.08995 * 109.47062 * 77.71300 * 3 2 1 28 28 H 1.08997 * 109.47636 * 317.70638 * 3 2 1 29 29 H 0.96998 * 120.00255 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47083 * 59.99486 * 15 13 4 31 31 H 1.09005 * 109.46960 * 300.00071 * 15 13 4 32 32 H 1.09005 * 109.47097 * 60.00223 * 16 15 13 33 33 H 1.08995 * 109.47150 * 299.99910 * 16 15 13 34 34 H 1.07996 * 123.44486 * 0.02562 * 20 19 17 35 35 H 1.08997 * 109.47407 * 89.99592 * 22 21 20 36 36 H 1.09002 * 109.46915 * 210.00174 * 22 21 20 37 37 H 1.09004 * 109.47002 * 329.99684 * 22 21 20 38 38 H 1.09000 * 109.47559 * 90.00218 * 25 24 19 39 39 H 1.09007 * 109.47330 * 210.00122 * 25 24 19 40 40 H 1.08996 * 109.47291 * 329.99732 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3167 0.4202 5 6 3.4760 2.2534 -0.5207 6 1 4.0881 3.0988 -0.2431 7 6 3.0355 2.1149 -1.8312 8 7 1.9845 1.3718 -2.0961 9 14 3.9371 2.9851 -3.2165 10 1 5.3460 2.5179 -3.2604 11 1 3.2730 2.6786 -4.5088 12 1 3.9088 4.4511 -2.9814 13 6 3.2458 1.6066 1.7316 14 8 3.6500 2.6961 2.0795 15 6 2.8700 0.5769 2.7658 16 6 3.0897 1.1556 4.1649 17 6 2.7133 0.1260 5.1992 18 8 2.3094 -0.9641 4.8511 19 6 2.8360 0.4405 6.6232 20 6 3.3084 1.7131 7.1226 21 6 3.3365 1.7744 8.4472 22 6 3.7842 2.9753 9.2401 23 16 2.7809 0.2655 9.1498 24 6 2.5110 -0.4343 7.6193 25 6 1.9864 -1.8292 7.3961 26 1 -1.0502 -0.0003 -0.0003 27 1 3.0094 -0.2179 -1.0041 28 1 3.0098 -0.7593 0.6915 29 1 1.6767 1.2754 -3.0108 30 1 3.4911 -0.3097 2.6381 31 1 1.8211 0.3063 2.6447 32 1 2.4688 2.0424 4.2929 33 1 4.1386 1.4259 4.2858 34 1 3.6068 2.5301 6.4824 35 1 2.9284 3.6216 9.4351 36 1 4.2142 2.6463 10.1861 37 1 4.5338 3.5266 8.6724 38 1 2.8219 -2.5269 7.3388 39 1 1.3352 -2.1093 8.2242 40 1 1.4224 -1.8604 6.4639 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491020699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:21 Heat of formation + Delta-G solvation = 13.263440 kcal Electronic energy + Delta-G solvation = -23554.805992 eV Core-core repulsion = 20042.236622 eV Total energy + Delta-G solvation = -3512.569371 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.85056 -38.53330 -37.14233 -35.20311 -33.24684 -32.53880 -31.83042 -31.15975 -29.63146 -26.98741 -26.25430 -25.12930 -24.17039 -22.51908 -20.45162 -18.80152 -18.46013 -17.82177 -17.16827 -16.59210 -16.20537 -15.63602 -15.47940 -14.70433 -14.51814 -14.12990 -14.05792 -13.91961 -13.88246 -13.47900 -13.15523 -13.10871 -12.86990 -12.39645 -12.16654 -12.14864 -11.90610 -11.78651 -11.69754 -11.55298 -11.36359 -11.04835 -10.92901 -10.68932 -10.51467 -10.28204 -9.39294 -9.30953 -9.22635 -8.84635 -8.76604 -8.56740 -8.38537 -7.83930 -6.30737 -3.83250 0.57517 1.29980 1.68458 1.73177 3.05936 3.18701 3.26186 3.29452 3.71426 3.95777 4.10982 4.16976 4.28431 4.48986 4.74568 5.00742 5.03110 5.07687 5.14466 5.24812 5.28185 5.40981 5.49150 5.51872 5.54241 5.58858 5.69228 5.87315 5.88132 5.96358 6.08939 6.18732 6.22928 6.35445 6.45175 6.48323 6.79451 7.07694 7.58413 7.70246 8.07703 8.44828 8.86415 9.15648 9.38995 9.94011 10.70054 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.002854 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.415990 B = 9808.180012 C =10772.088808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.112 4.112 3 C 0.231 3.769 4 N -0.440 5.440 5 C -0.318 4.318 6 H 0.104 0.896 7 C 0.032 3.968 8 N -0.862 5.862 9 Si 0.921 3.079 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.450 3.550 14 O -0.588 6.588 15 C -0.122 4.122 16 C -0.139 4.139 17 C 0.415 3.585 18 O -0.456 6.456 19 C -0.195 4.195 20 C -0.096 4.096 21 C -0.207 4.207 22 C -0.081 4.081 23 S 0.163 5.837 24 C -0.144 4.144 25 C -0.096 4.096 26 H 0.199 0.801 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.268 0.732 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.155 0.845 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 -4.543 19.672 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.113 4.113 3 C 0.108 3.892 4 N -0.158 5.158 5 C -0.445 4.445 6 H 0.121 0.879 7 C -0.173 4.173 8 N -0.499 5.499 9 Si 0.747 3.253 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.239 3.761 14 O -0.473 6.473 15 C -0.163 4.163 16 C -0.177 4.177 17 C 0.292 3.708 18 O -0.333 6.333 19 C -0.210 4.210 20 C -0.124 4.124 21 C -0.324 4.324 22 C -0.140 4.140 23 S 0.429 5.571 24 C -0.263 4.263 25 C -0.154 4.154 26 H 0.216 0.784 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.173 0.827 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.644 -5.117 20.939 21.565 hybrid contribution 0.128 0.968 -2.397 2.588 sum 0.772 -4.148 18.542 19.016 Atomic orbital electron populations 1.24262 0.95368 1.02819 1.05620 1.23164 0.94353 0.97742 0.96061 1.18271 0.84316 0.85040 1.01612 1.43693 1.55816 1.11892 1.04353 1.19624 1.30384 1.06579 0.87892 0.87855 1.25285 0.95149 0.97891 0.98950 1.70090 1.19655 1.39529 1.20673 0.86087 0.79635 0.79818 0.79714 1.19907 1.21081 1.19894 1.20048 0.84238 0.88551 0.83247 1.90502 1.51519 1.24993 1.80312 1.21357 1.03405 0.98668 0.92835 1.21662 1.04561 0.98491 0.92949 1.21987 0.73050 0.87827 0.87917 1.90470 1.35210 1.24264 1.83366 1.20802 1.09435 0.94924 0.95831 1.21280 1.00006 0.97006 0.94078 1.24229 1.10460 1.00217 0.97468 1.20338 1.01640 0.93165 0.98820 1.82908 1.62203 1.05720 1.06270 1.24787 1.02661 1.01458 0.97396 1.20646 1.01492 0.89038 1.04273 0.78427 0.87309 0.91821 0.92105 0.90038 0.89655 0.87941 0.87894 0.82745 0.90725 0.91436 0.90251 0.90141 0.91542 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.62 19.25 29.55 0.57 -5.05 16 2 C -0.11 -2.58 10.88 -37.12 -0.40 -2.98 16 3 C 0.23 5.23 4.91 -6.83 -0.03 5.20 16 4 N -0.44 -11.19 2.60 -117.93 -0.31 -11.50 16 5 C -0.32 -8.76 9.33 -14.93 -0.14 -8.90 16 6 H 0.10 2.98 7.38 -52.49 -0.39 2.59 16 7 C 0.03 0.83 4.87 -17.47 -0.08 0.74 16 8 N -0.86 -22.81 9.48 55.50 0.53 -22.29 16 9 Si 0.92 20.52 29.60 -169.99 -5.03 15.49 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 C 0.45 10.87 7.56 -10.99 -0.08 10.79 16 14 O -0.59 -15.77 15.63 5.54 0.09 -15.68 16 15 C -0.12 -2.34 3.59 -27.88 -0.10 -2.44 16 16 C -0.14 -2.26 4.11 -27.88 -0.11 -2.37 16 17 C 0.41 6.30 7.11 -31.04 -0.22 6.08 16 18 O -0.46 -7.70 13.71 5.49 0.08 -7.63 16 19 C -0.20 -2.59 5.97 -104.74 -0.63 -3.21 16 20 C -0.10 -1.11 9.72 -38.96 -0.38 -1.48 16 21 C -0.21 -2.06 6.43 -36.20 -0.23 -2.29 16 22 C -0.08 -0.57 10.34 36.01 0.37 -0.20 16 23 S 0.16 1.53 22.94 -107.50 -2.47 -0.93 16 24 C -0.14 -1.70 6.36 -34.94 -0.22 -1.92 16 25 C -0.10 -1.02 9.60 36.00 0.35 -0.68 16 26 H 0.20 3.48 7.80 -54.08 -0.42 3.06 16 27 H 0.11 2.58 6.44 -51.93 -0.33 2.24 16 28 H 0.06 1.23 6.69 -51.93 -0.35 0.88 16 29 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.08 1.45 7.37 -51.93 -0.38 1.07 16 31 H 0.09 1.68 7.46 -51.93 -0.39 1.29 16 32 H 0.10 1.68 8.10 -51.93 -0.42 1.26 16 33 H 0.10 1.61 8.10 -51.93 -0.42 1.19 16 34 H 0.16 1.64 7.76 -52.49 -0.41 1.24 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.10 1.29 5.96 -51.93 -0.31 0.98 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -32.03 357.40 -8.15 -40.18 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.07 Total: 5.69 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -1.35 Total: -8.72 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.22 Total: -33.78 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.16 Total: -23.30 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.47 Total: -0.93 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.03 -8.15 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491020699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.440 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds