Wall clock time and date at job start Tue Mar 31 2020 12:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46720 * 197.70973 * 3 2 1 5 5 C 1.37107 * 120.00334 * 264.14047 * 4 3 2 6 6 H 1.07999 * 119.99918 * 197.43768 * 5 4 3 7 7 C 1.38953 * 119.99541 * 17.43485 * 5 4 3 8 8 N 1.31411 * 120.00040 * 21.52577 * 7 5 4 9 9 Si 1.86794 * 119.99947 * 201.52197 * 7 5 4 10 10 H 1.48504 * 109.46916 * 60.00309 * 9 7 5 11 11 H 1.48500 * 109.47375 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47068 * 300.00481 * 9 7 5 13 13 C 1.34773 * 120.00183 * 84.13964 * 4 3 2 14 14 O 1.21298 * 120.00489 * 179.97438 * 13 4 3 15 15 C 1.50703 * 120.00161 * 0.02562 * 13 4 3 16 16 C 1.52994 * 109.47400 * 179.97438 * 15 13 4 17 17 C 1.50707 * 109.47176 * 179.97438 * 16 15 13 18 18 O 1.21354 * 119.99902 * 0.02562 * 17 16 15 19 19 C 1.46348 * 120.00031 * 179.97438 * 17 16 15 20 20 C 1.44638 * 123.53255 * 0.03047 * 19 17 16 21 21 C 1.32632 * 113.10404 * 179.97438 * 20 19 17 22 22 C 1.50706 * 124.64808 * 179.97438 * 21 20 19 23 23 S 1.75479 * 110.69902 * 359.97438 * 21 20 19 24 24 C 1.36495 * 123.53268 * 179.73190 * 19 17 16 25 25 C 1.50693 * 124.61466 * 359.97438 * 24 19 17 26 26 H 4.40641 * 5.51460 * 179.97438 * 4 1 2 27 27 H 1.08995 * 109.47062 * 77.71300 * 3 2 1 28 28 H 1.08997 * 109.47636 * 317.70638 * 3 2 1 29 29 H 0.96998 * 120.00255 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47083 * 59.99486 * 15 13 4 31 31 H 1.09005 * 109.46960 * 300.00071 * 15 13 4 32 32 H 1.09005 * 109.47097 * 60.00223 * 16 15 13 33 33 H 1.08995 * 109.47150 * 299.99910 * 16 15 13 34 34 H 1.07996 * 123.44486 * 0.02562 * 20 19 17 35 35 H 1.08997 * 109.47407 * 89.99592 * 22 21 20 36 36 H 1.09002 * 109.46915 * 210.00174 * 22 21 20 37 37 H 1.09004 * 109.47002 * 329.99684 * 22 21 20 38 38 H 1.09000 * 109.47559 * 90.00218 * 25 24 19 39 39 H 1.09007 * 109.47330 * 210.00122 * 25 24 19 40 40 H 1.08996 * 109.47291 * 329.99732 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3167 0.4202 5 6 3.4760 2.2534 -0.5207 6 1 4.0881 3.0988 -0.2431 7 6 3.0355 2.1149 -1.8312 8 7 1.9845 1.3718 -2.0961 9 14 3.9371 2.9851 -3.2165 10 1 5.3460 2.5179 -3.2604 11 1 3.2730 2.6786 -4.5088 12 1 3.9088 4.4511 -2.9814 13 6 3.2458 1.6066 1.7316 14 8 3.6500 2.6961 2.0795 15 6 2.8700 0.5769 2.7658 16 6 3.0897 1.1556 4.1649 17 6 2.7133 0.1260 5.1992 18 8 2.3094 -0.9641 4.8511 19 6 2.8360 0.4405 6.6232 20 6 3.3084 1.7131 7.1226 21 6 3.3365 1.7744 8.4472 22 6 3.7842 2.9753 9.2401 23 16 2.7809 0.2655 9.1498 24 6 2.5110 -0.4343 7.6193 25 6 1.9864 -1.8292 7.3961 26 1 -1.0502 -0.0003 -0.0003 27 1 3.0094 -0.2179 -1.0041 28 1 3.0098 -0.7593 0.6915 29 1 1.6767 1.2754 -3.0108 30 1 3.4911 -0.3097 2.6381 31 1 1.8211 0.3063 2.6447 32 1 2.4688 2.0424 4.2929 33 1 4.1386 1.4259 4.2858 34 1 3.6068 2.5301 6.4824 35 1 2.9284 3.6216 9.4351 36 1 4.2142 2.6463 10.1861 37 1 4.5338 3.5266 8.6724 38 1 2.8219 -2.5269 7.3388 39 1 1.3352 -2.1093 8.2242 40 1 1.4224 -1.8604 6.4639 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491020699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:20 Heat of formation + Delta-G solvation = -3.296077 kcal Electronic energy + Delta-G solvation = -23555.524067 eV Core-core repulsion = 20042.236622 eV Total energy + Delta-G solvation = -3513.287445 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10313 -40.28965 -38.10127 -37.12731 -34.34649 -33.97444 -33.48212 -33.02626 -30.49708 -28.54830 -27.83480 -26.47608 -25.48124 -23.75416 -21.41421 -20.56779 -19.68808 -19.55928 -18.43358 -18.15604 -17.69279 -16.94621 -16.87720 -16.36398 -15.94090 -15.79576 -15.44533 -15.07678 -14.77979 -14.45102 -14.33682 -14.12576 -14.02351 -13.88598 -13.82524 -13.55092 -13.45029 -13.03232 -12.80832 -12.69083 -12.56718 -12.47518 -12.47416 -12.18407 -12.09867 -11.85996 -11.17216 -11.09990 -10.65780 -10.55163 -10.32386 -9.83216 -9.56488 -9.39605 -8.31218 -5.92153 -0.35714 0.50478 0.72837 0.89940 1.38501 1.43231 1.53039 1.88432 2.01422 2.13345 2.32633 2.38095 2.95534 3.05728 3.41840 3.68651 3.81024 3.87905 3.97795 4.11752 4.19999 4.24300 4.40908 4.52928 4.61480 4.62634 4.68191 4.76405 4.78518 4.89734 4.95079 4.97037 5.03318 5.11586 5.18873 5.25212 5.40511 5.41990 5.47821 6.05620 6.43999 6.54078 7.12503 7.14491 7.42358 7.98456 8.67327 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.002854 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.415990 B = 9808.180012 C =10772.088808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.153 4.153 3 C 0.234 3.766 4 N -0.452 5.452 5 C -0.356 4.356 6 H 0.079 0.921 7 C 0.003 3.997 8 N -0.873 5.873 9 Si 0.985 3.015 10 H -0.266 1.266 11 H -0.274 1.274 12 H -0.278 1.278 13 C 0.441 3.559 14 O -0.623 6.623 15 C -0.108 4.108 16 C -0.133 4.133 17 C 0.421 3.579 18 O -0.479 6.479 19 C -0.221 4.221 20 C -0.116 4.116 21 C -0.208 4.208 22 C -0.083 4.083 23 S 0.223 5.777 24 C -0.157 4.157 25 C -0.096 4.096 26 H 0.233 0.767 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.272 0.728 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.155 0.845 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 -4.956 21.203 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.155 4.155 3 C 0.111 3.889 4 N -0.170 5.170 5 C -0.483 4.483 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.509 5.509 9 Si 0.809 3.191 10 H -0.191 1.191 11 H -0.199 1.199 12 H -0.204 1.204 13 C 0.231 3.769 14 O -0.511 6.511 15 C -0.148 4.148 16 C -0.171 4.171 17 C 0.301 3.699 18 O -0.358 6.358 19 C -0.236 4.236 20 C -0.143 4.143 21 C -0.324 4.324 22 C -0.142 4.142 23 S 0.490 5.510 24 C -0.277 4.277 25 C -0.155 4.155 26 H 0.250 0.750 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.125 0.875 34 H 0.173 0.827 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.359 -5.550 22.476 23.154 hybrid contribution 0.157 1.100 -2.780 2.993 sum 0.515 -4.450 19.697 20.200 Atomic orbital electron populations 1.25148 0.96377 1.01076 1.03954 1.23466 0.95046 0.99347 0.97631 1.18295 0.84632 0.84436 1.01521 1.43901 1.55892 1.12543 1.04619 1.19587 1.31889 1.07348 0.89486 0.90359 1.25998 0.95383 0.98427 1.00293 1.70185 1.19867 1.39695 1.21196 0.85132 0.78774 0.78276 0.76945 1.19131 1.19897 1.20366 1.20862 0.83178 0.89094 0.83729 1.90461 1.52926 1.26749 1.80933 1.21232 1.03123 0.97643 0.92780 1.21594 1.04857 0.98754 0.91849 1.21884 0.72324 0.86933 0.88779 1.90463 1.36602 1.24887 1.83870 1.20681 1.11789 0.96377 0.94751 1.21308 1.01353 0.96650 0.94983 1.24663 1.09032 1.01434 0.97292 1.20470 1.02282 0.92228 0.99173 1.82687 1.60342 1.04295 1.03654 1.25097 1.01960 1.01840 0.98790 1.20658 1.01849 0.88755 1.04194 0.75044 0.88802 0.88921 0.91816 0.88629 0.90027 0.88358 0.87505 0.82739 0.89659 0.89768 0.89765 0.89538 0.89176 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.31 19.25 74.32 1.43 -8.88 16 2 C -0.15 -7.07 10.88 31.12 0.34 -6.73 16 3 C 0.23 10.74 4.91 84.57 0.42 11.15 16 4 N -0.45 -23.65 2.60 -645.42 -1.68 -25.32 16 5 C -0.36 -20.26 9.33 84.04 0.78 -19.48 16 6 H 0.08 4.74 7.38 -2.91 -0.02 4.72 16 7 C 0.00 0.13 4.87 84.93 0.41 0.55 16 8 N -0.87 -46.23 9.48 21.66 0.21 -46.03 16 9 Si 0.98 42.33 29.60 68.60 2.03 44.36 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 13 C 0.44 21.96 7.56 87.66 0.66 22.62 16 14 O -0.62 -34.72 15.63 -3.08 -0.05 -34.77 16 15 C -0.11 -4.20 3.59 29.85 0.11 -4.09 16 16 C -0.13 -4.42 4.11 29.85 0.12 -4.29 16 17 C 0.42 12.95 7.11 27.80 0.20 13.15 16 18 O -0.48 -16.34 13.71 -3.26 -0.04 -16.38 16 19 C -0.22 -5.77 5.97 -19.94 -0.12 -5.89 16 20 C -0.12 -2.59 9.72 22.74 0.22 -2.37 16 21 C -0.21 -3.70 6.43 24.52 0.16 -3.55 16 22 C -0.08 -0.97 10.34 71.24 0.74 -0.23 16 23 S 0.22 3.63 22.94 -56.49 -1.30 2.33 16 24 C -0.16 -3.51 6.36 25.28 0.16 -3.35 16 25 C -0.10 -1.94 9.60 71.23 0.68 -1.25 16 26 H 0.23 7.57 7.80 -4.41 -0.03 7.54 16 27 H 0.09 4.53 6.44 -2.39 -0.02 4.52 16 28 H 0.09 3.59 6.69 -2.39 -0.02 3.58 16 29 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 30 H 0.10 3.42 7.37 -2.39 -0.02 3.40 16 31 H 0.08 3.25 7.46 -2.38 -0.02 3.24 16 32 H 0.10 3.34 8.10 -2.38 -0.02 3.32 16 33 H 0.11 3.45 8.10 -2.39 -0.02 3.43 16 34 H 0.16 3.31 7.76 -2.91 -0.02 3.29 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.08 2.03 5.96 -2.39 -0.01 2.01 16 Total: -1.00 -70.01 357.40 6.54 -63.47 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 1.06 Total: 24.99 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 6.31 Total: -12.65 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -1.47 Total: -71.35 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -0.09 Total: -51.15 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 3.63 SS G_CDS: -1.30 Total: 2.33 kcal Total: -70.01 6.54 -63.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491020699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.176 kcal (2) G-P(sol) polarization free energy of solvation -70.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds