Wall clock time and date at job start Tue Mar 31 2020 12:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99670 * 2 1 4 4 H 1.48504 * 109.46915 * 269.99638 * 3 2 1 5 5 H 1.48506 * 109.47185 * 29.99665 * 3 2 1 6 6 H 1.48500 * 109.47180 * 149.99881 * 3 2 1 7 7 C 1.37877 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00191 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99589 * 180.02562 * 7 2 1 10 10 N 1.46905 * 109.47129 * 174.97689 * 9 7 2 11 11 C 1.46894 * 111.00055 * 64.83462 * 10 9 7 12 12 C 1.50691 * 109.47393 * 190.00165 * 11 10 9 13 13 C 1.38421 * 122.54146 * 259.97912 * 12 11 10 14 14 C 1.33387 * 114.92355 * 180.02562 * 13 12 11 15 15 S 1.75882 * 109.59416 * 0.02562 * 14 13 12 16 16 C 1.33391 * 122.53925 * 80.00164 * 12 11 10 17 17 C 1.50695 * 125.20116 * 0.24370 * 16 12 11 18 18 F 1.39898 * 109.47194 * 89.72402 * 17 16 12 19 19 F 1.39908 * 109.47155 * 209.71828 * 17 16 12 20 20 F 1.39897 * 109.47499 * 329.71754 * 17 16 12 21 21 C 1.46906 * 111.00057 * 188.79252 * 10 9 7 22 22 C 1.52998 * 109.47219 * 71.44685 * 21 10 9 23 23 C 1.52999 * 117.50051 * 243.48613 * 22 21 10 24 24 C 1.52997 * 117.49485 * 174.82508 * 22 21 10 25 25 H 0.96999 * 120.00495 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47212 * 54.97925 * 9 7 2 27 27 H 1.08999 * 109.47402 * 294.97810 * 9 7 2 28 28 H 1.08999 * 109.46982 * 69.99894 * 11 10 9 29 29 H 1.09000 * 109.47515 * 310.00470 * 11 10 9 30 30 H 1.08004 * 122.54070 * 0.03930 * 13 12 11 31 31 H 1.08003 * 125.20197 * 180.02562 * 14 13 12 32 32 H 1.09000 * 109.46734 * 191.45455 * 21 10 9 33 33 H 1.08999 * 109.46389 * 311.44686 * 21 10 9 34 34 H 1.08999 * 115.54867 * 29.16054 * 22 21 10 35 35 H 1.08994 * 117.49637 * 0.02562 * 23 22 21 36 36 H 1.08997 * 117.49526 * 145.02742 * 23 22 21 37 37 H 1.09002 * 117.49461 * 214.98164 * 24 22 21 38 38 H 1.08996 * 117.49996 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1939 0.0011 10 7 4.0013 -2.5736 0.1229 11 6 3.6275 -3.3706 -1.0530 12 6 3.9253 -4.8242 -0.7901 13 6 5.0601 -5.4513 -1.2749 14 6 5.1715 -6.7406 -0.9515 15 16 3.7868 -7.2273 0.0177 16 6 3.1152 -5.6042 -0.0727 17 6 1.8192 -5.1640 0.5577 18 9 0.7705 -5.3583 -0.3477 19 9 1.5832 -5.9168 1.7131 20 9 1.9005 -3.8082 0.8931 21 6 5.4545 -2.5995 0.3362 22 6 5.7719 -2.1007 1.7473 23 6 6.5916 -0.8151 1.8745 24 6 7.2292 -2.1660 2.2085 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6039 0.8428 27 1 3.8752 -0.7602 -0.9304 28 1 4.1993 -3.0331 -1.9174 29 1 2.5627 -3.2481 -1.2516 30 1 5.7994 -4.9357 -1.8699 31 1 5.9872 -7.3867 -1.2405 32 1 5.8206 -3.6197 0.2204 33 1 5.9406 -1.9539 -0.3953 34 1 4.9989 -2.2808 2.4945 35 1 6.9044 -0.3245 0.9529 36 1 6.3582 -0.1496 2.7057 37 1 7.4150 -2.3887 3.2593 38 1 7.9619 -2.5640 1.5065 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529527337.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:31 Heat of formation + Delta-G solvation = -86.403906 kcal Electronic energy + Delta-G solvation = -26002.203122 eV Core-core repulsion = 21943.455111 eV Total energy + Delta-G solvation = -4058.748011 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.091 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.99875 -48.60616 -48.39130 -40.19380 -38.54194 -36.66505 -34.45512 -32.01521 -30.20990 -29.18873 -26.53510 -25.18871 -23.77892 -23.14593 -22.45166 -21.00204 -20.55553 -19.79781 -19.54880 -18.75274 -18.35815 -17.20201 -16.75985 -16.46066 -16.00069 -15.77274 -15.52126 -15.42171 -15.20312 -15.06694 -14.95363 -14.60287 -14.53770 -14.35095 -14.22681 -13.88992 -13.73162 -13.34776 -13.21039 -13.10476 -12.73404 -12.49500 -12.36445 -12.18100 -12.09490 -11.81754 -11.68783 -11.28028 -11.05893 -10.74431 -10.66011 -10.02222 -9.42932 -8.96256 -8.18184 -6.19530 -0.32435 0.32555 0.85242 1.33866 1.36765 1.46600 1.52413 1.83632 2.39182 2.89658 2.94844 3.11932 3.29682 3.36890 3.51920 3.83717 4.01437 4.09025 4.15372 4.22444 4.30645 4.55148 4.56499 4.68438 4.76019 4.80688 4.87386 4.94290 5.01834 5.07414 5.12595 5.28428 5.29894 5.33116 5.42847 5.64979 6.10658 6.38518 6.74400 6.95340 7.43038 8.97346 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.006311 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.178620 B = 4435.931476 C = 5929.671820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.934 3.066 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.248 1.248 7 C -0.514 4.514 8 H 0.068 0.932 9 C 0.177 3.823 10 N -0.523 5.523 11 C 0.107 3.893 12 C -0.018 4.018 13 C -0.149 4.149 14 C -0.158 4.158 15 S 0.179 5.821 16 C -0.314 4.314 17 C 0.521 3.479 18 F -0.191 7.191 19 F -0.187 7.187 20 F -0.142 7.142 21 C 0.086 3.914 22 C -0.159 4.159 23 C -0.192 4.192 24 C -0.151 4.151 25 H 0.262 0.738 26 H 0.033 0.967 27 H -0.018 1.018 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.172 0.828 31 H 0.217 0.783 32 H 0.089 0.911 33 H 0.032 0.968 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.727 -13.891 -1.225 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.189 4.189 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.172 1.172 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.050 3.950 10 N -0.247 5.247 11 C -0.023 4.023 12 C -0.034 4.034 13 C -0.179 4.179 14 C -0.294 4.294 15 S 0.445 5.555 16 C -0.433 4.433 17 C 0.465 3.535 18 F -0.172 7.172 19 F -0.168 7.168 20 F -0.123 7.123 21 C -0.042 4.042 22 C -0.178 4.178 23 C -0.229 4.229 24 C -0.188 4.188 25 H 0.071 0.929 26 H 0.051 0.949 27 H -0.001 1.001 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.190 0.810 31 H 0.234 0.766 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.121 0.879 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 15.873 -15.367 -0.106 22.093 hybrid contribution -0.220 2.957 -1.081 3.156 sum 15.654 -12.410 -1.187 20.011 Atomic orbital electron populations 1.70060 1.08011 1.27504 1.53702 1.25758 0.95412 1.02605 0.95130 0.85906 0.79734 0.79645 0.78821 1.19587 1.21453 1.17174 1.21744 0.91293 0.94361 1.47863 0.91432 1.19908 0.94292 0.86294 0.94501 1.61842 1.12233 1.12735 1.37899 1.20738 1.01303 0.88087 0.92164 1.19020 0.93821 0.96087 0.94454 1.20190 0.98119 0.94909 1.04648 1.26315 1.02298 0.99355 1.01437 1.84077 1.15768 1.04543 1.51141 1.24405 1.01484 1.02829 1.14544 1.17810 0.83414 0.76481 0.75802 1.93167 1.61128 1.95065 1.67882 1.93138 1.95405 1.76676 1.51614 1.93496 1.96045 1.30509 1.92252 1.21742 0.87522 1.00899 0.93992 1.22185 0.94940 1.02415 0.98220 1.23071 1.05220 0.91415 1.03214 1.23011 0.94142 0.99009 1.02659 0.92917 0.94913 1.00071 0.92925 0.91933 0.81035 0.76639 0.89288 0.94960 0.89652 0.88963 0.89431 0.87893 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 2 C 0.01 0.43 5.47 84.65 0.46 0.89 16 3 Si 0.93 44.94 27.57 68.60 1.89 46.83 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.25 -11.12 6.40 99.48 0.64 -10.48 16 7 C -0.51 -29.58 8.61 25.60 0.22 -29.36 16 8 H 0.07 4.25 4.58 -2.91 -0.01 4.23 16 9 C 0.18 8.38 3.67 85.55 0.31 8.69 16 10 N -0.52 -20.82 3.10 -905.37 -2.81 -23.63 16 11 C 0.11 3.94 4.08 85.56 0.35 4.29 16 12 C -0.02 -0.54 4.48 -20.92 -0.09 -0.64 16 13 C -0.15 -3.02 8.73 21.22 0.19 -2.83 16 14 C -0.16 -2.46 11.23 66.72 0.75 -1.71 16 15 S 0.18 3.90 23.05 -56.49 -1.30 2.59 16 16 C -0.31 -10.00 5.95 24.59 0.15 -9.86 16 17 C 0.52 20.40 3.26 71.23 0.23 20.63 16 18 F -0.19 -7.80 17.30 44.97 0.78 -7.03 16 19 F -0.19 -6.90 17.06 44.97 0.77 -6.13 16 20 F -0.14 -6.78 10.86 44.97 0.49 -6.29 16 21 C 0.09 2.67 5.12 86.30 0.44 3.11 16 22 C -0.16 -4.81 4.97 -10.80 -0.05 -4.87 16 23 C -0.19 -5.16 10.18 30.62 0.31 -4.85 16 24 C -0.15 -3.32 10.25 30.62 0.31 -3.01 16 25 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 26 H 0.03 1.59 5.98 -2.38 -0.01 1.57 16 27 H -0.02 -0.85 7.81 -2.39 -0.02 -0.87 16 28 H 0.05 1.74 8.06 -2.39 -0.02 1.72 16 29 H 0.06 2.84 5.75 -2.39 -0.01 2.82 16 30 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.22 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.09 2.36 5.97 -2.39 -0.01 2.35 16 33 H 0.03 0.96 7.79 -2.39 -0.02 0.94 16 34 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 35 H 0.09 2.40 8.03 -2.39 -0.02 2.38 16 36 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -70.37 330.47 4.72 -65.65 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.02 Total: 8.00 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 3.58 Total: -19.51 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.51 Total: -84.12 kcal Atomic # 9 Polarization: -21.48 SS G_CDS: 2.03 Total: -19.45 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.89 Total: 46.83 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.30 Total: 2.59 kcal Total: -70.37 4.72 -65.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529527337.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.752 kcal (2) G-P(sol) polarization free energy of solvation -70.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds