Wall clock time and date at job start Tue Mar 31 2020 12:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00181 * 2 1 4 4 H 1.48504 * 109.47497 * 275.54553 * 3 2 1 5 5 H 1.48507 * 109.47134 * 35.54157 * 3 2 1 6 6 H 1.48498 * 109.47290 * 155.53974 * 3 2 1 7 7 C 1.38811 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99714 * 335.76973 * 7 2 1 9 9 N 1.36930 * 120.00441 * 155.78304 * 7 2 1 10 10 C 1.46500 * 119.99529 * 323.54827 * 9 7 2 11 11 C 1.50698 * 109.47305 * 267.92639 * 10 9 7 12 12 C 1.38423 * 122.53873 * 6.54263 * 11 10 9 13 13 C 1.33390 * 114.91895 * 179.76233 * 12 11 10 14 14 S 1.75883 * 109.59738 * 0.47204 * 13 12 11 15 15 C 1.33393 * 122.54176 * 186.82709 * 11 10 9 16 16 C 1.50706 * 125.19998 * 359.97438 * 15 11 10 17 17 F 1.39890 * 109.46864 * 86.43926 * 16 15 11 18 18 F 1.39904 * 109.46664 * 206.43696 * 16 15 11 19 19 F 1.39898 * 109.47130 * 326.43721 * 16 15 11 20 20 C 1.46495 * 120.00473 * 143.55387 * 9 7 2 21 21 C 1.55233 * 110.58334 * 52.91594 * 20 9 7 22 22 C 1.54888 * 102.59325 * 203.34106 * 21 20 9 23 23 C 1.54271 * 104.30784 * 37.92864 * 22 21 20 24 24 C 1.53865 * 106.60011 * 336.32524 * 23 22 21 25 25 H 0.97001 * 119.99481 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47480 * 27.92904 * 10 9 7 27 27 H 1.09004 * 109.47216 * 147.93158 * 10 9 7 28 28 H 1.07997 * 122.54305 * 359.97438 * 12 11 10 29 29 H 1.08008 * 125.20271 * 180.20491 * 13 12 11 30 30 H 1.09004 * 110.43870 * 175.49916 * 20 9 7 31 31 H 1.09000 * 110.89945 * 85.04680 * 21 20 9 32 32 H 1.09005 * 110.76756 * 321.57183 * 21 20 9 33 33 H 1.09007 * 110.48403 * 279.19171 * 22 21 20 34 34 H 1.08999 * 110.49199 * 156.67356 * 22 21 20 35 35 H 1.08999 * 110.03336 * 95.61751 * 23 22 21 36 36 H 1.09006 * 110.02977 * 216.99352 * 23 22 21 37 37 H 1.09008 * 110.03449 * 119.28898 * 24 23 22 38 38 H 1.09002 * 110.03692 * 240.66260 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3807 2.1141 -1.3935 5 1 1.5112 2.6160 0.8139 6 1 3.6015 1.4091 0.5797 7 6 2.0103 -1.2021 -0.0005 8 1 1.5416 -2.0965 0.3830 9 7 3.2892 -1.2542 -0.4870 10 6 3.6667 -0.4382 -1.6436 11 6 3.4703 -1.2360 -2.9069 12 6 2.8782 -2.4872 -2.9128 13 6 2.7765 -3.0551 -4.1155 14 16 3.4664 -1.9884 -5.3319 15 6 3.8588 -0.7924 -4.1034 16 6 4.5306 0.5314 -4.3629 17 9 5.9121 0.3951 -4.1899 18 9 4.2629 0.9411 -5.6736 19 9 4.0403 1.4869 -3.4664 20 6 4.2800 -2.1259 0.1491 21 6 3.7411 -3.5778 0.2556 22 6 4.5738 -4.1623 1.4235 23 6 4.7002 -2.9944 2.4235 24 6 4.5134 -1.6998 1.6132 25 1 -0.4849 0.8401 0.0004 26 1 3.0428 0.4550 -1.6773 27 1 4.7136 -0.1471 -1.5569 28 1 2.5224 -2.9658 -2.0124 29 1 2.3412 -4.0239 -4.3117 30 1 5.2169 -2.1070 -0.4077 31 1 3.9270 -4.1301 -0.6656 32 1 2.6789 -3.5789 0.5002 33 1 5.5582 -4.4721 1.0725 34 1 4.0515 -5.0021 1.8817 35 1 3.9267 -3.0716 3.1875 36 1 5.6861 -3.0059 2.8883 37 1 3.6491 -1.1486 1.9839 38 1 5.4085 -1.0819 1.6848 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529532595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:34 Heat of formation + Delta-G solvation = -94.861591 kcal Electronic energy + Delta-G solvation = -26117.240915 eV Core-core repulsion = 22058.126151 eV Total energy + Delta-G solvation = -4059.114764 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.091 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.93533 -47.47323 -47.40356 -38.71464 -37.29891 -34.28763 -31.58540 -30.77113 -28.04577 -27.97241 -26.45769 -24.57724 -22.74679 -22.33988 -19.98279 -19.37897 -19.11084 -18.68001 -18.29002 -17.45195 -16.10903 -15.84808 -15.54157 -15.33167 -14.57926 -14.52027 -14.30744 -14.20503 -13.85429 -13.59757 -13.56932 -13.41027 -13.21624 -12.78343 -12.56520 -12.42269 -12.17259 -11.99230 -11.86852 -11.31967 -11.15775 -10.92578 -10.63884 -10.57535 -10.48420 -10.42048 -10.23602 -9.98928 -9.76383 -9.49311 -8.71639 -8.57237 -8.00788 -6.97394 -6.09042 -3.50071 0.97876 1.62437 2.08287 2.93551 3.01513 3.30118 3.45503 3.48372 3.99549 4.41781 4.46613 4.60588 4.74563 5.15542 5.22955 5.27664 5.31251 5.51148 5.71452 5.87082 5.94486 6.01591 6.08714 6.14754 6.16814 6.27944 6.32565 6.41035 6.45120 6.47097 6.63886 6.69790 6.83999 6.90501 6.96910 7.12874 7.94731 8.29950 8.87687 9.61732 9.99863 11.05461 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.006485 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.290848 B = 4316.703445 C = 5121.222699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.044 3.956 3 Si 0.853 3.147 4 H -0.277 1.277 5 H -0.299 1.299 6 H -0.265 1.265 7 C -0.270 4.270 8 H 0.087 0.913 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.010 4.010 12 C -0.098 4.098 13 C -0.194 4.194 14 S 0.115 5.885 15 C -0.332 4.332 16 C 0.544 3.456 17 F -0.177 7.177 18 F -0.179 7.179 19 F -0.167 7.167 20 C 0.172 3.828 21 C -0.134 4.134 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.139 4.139 25 H 0.264 0.736 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.167 0.833 29 H 0.168 0.832 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.131 -5.235 -6.225 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.158 4.158 3 Si 0.682 3.318 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.398 4.398 8 H 0.105 0.895 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.028 4.028 12 C -0.128 4.128 13 C -0.330 4.330 14 S 0.379 5.621 15 C -0.450 4.450 16 C 0.488 3.512 17 F -0.158 7.158 18 F -0.161 7.161 19 F -0.148 7.148 20 C 0.065 3.935 21 C -0.173 4.173 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.178 4.178 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.184 0.816 29 H 0.186 0.814 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.160 -5.199 -7.801 13.107 hybrid contribution 0.233 1.365 1.444 2.000 sum 9.393 -3.834 -6.357 11.973 Atomic orbital electron populations 1.69874 1.05963 1.26865 1.50247 1.25419 0.94972 0.97513 0.97876 0.87279 0.81243 0.85510 0.77751 1.20470 1.22631 1.18912 1.18633 0.87036 0.94676 1.39436 0.89536 1.44171 1.09106 1.49397 1.28263 1.20432 0.98820 0.93581 0.83040 1.20298 0.91508 0.95429 0.95537 1.20308 0.99325 0.94233 0.98950 1.25848 1.07181 1.04051 0.95920 1.83877 1.59104 1.09276 1.09808 1.24242 1.20002 1.00810 0.99918 1.17294 0.76247 0.83849 0.73837 1.93197 1.31533 1.96002 1.95111 1.93173 1.93733 1.91737 1.37446 1.93256 1.87571 1.66181 1.67821 1.21362 0.90763 0.89728 0.91670 1.22951 1.01110 0.96690 0.96574 1.22274 0.99406 0.97378 0.96981 1.22035 1.00152 0.95524 0.97945 1.22582 1.01487 0.96578 0.97153 0.92581 0.89525 0.92278 0.81611 0.81425 0.92600 0.92797 0.90056 0.92677 0.92628 0.92405 0.93205 0.89980 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.97 55.49 0.78 -24.94 16 2 C 0.04 1.19 5.26 -17.43 -0.09 1.09 16 3 Si 0.85 21.17 25.13 -169.99 -4.27 16.90 16 4 H -0.28 -6.85 6.65 56.52 0.38 -6.48 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 6 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.27 -6.71 7.90 -15.06 -0.12 -6.83 16 8 H 0.09 2.30 6.52 -52.48 -0.34 1.96 16 9 N -0.59 -12.57 1.08 -164.93 -0.18 -12.75 16 10 C 0.17 3.57 3.32 -5.19 -0.02 3.55 16 11 C -0.01 -0.19 5.77 -106.25 -0.61 -0.80 16 12 C -0.10 -1.73 9.37 -41.21 -0.39 -2.12 16 13 C -0.19 -2.85 11.23 29.04 0.33 -2.52 16 14 S 0.11 1.68 23.00 -107.50 -2.47 -0.79 16 15 C -0.33 -5.85 5.95 -36.00 -0.21 -6.07 16 16 C 0.54 9.39 3.35 36.01 0.12 9.51 16 17 F -0.18 -2.89 17.30 2.25 0.04 -2.86 16 18 F -0.18 -2.92 17.01 2.25 0.04 -2.88 16 19 F -0.17 -3.20 14.97 2.25 0.03 -3.17 16 20 C 0.17 3.12 3.38 -66.09 -0.22 2.89 16 21 C -0.13 -2.19 5.44 -24.55 -0.13 -2.32 16 22 C -0.12 -1.72 6.82 -25.07 -0.17 -1.89 16 23 C -0.12 -1.76 6.80 -25.62 -0.17 -1.93 16 24 C -0.14 -2.46 6.43 -25.62 -0.16 -2.63 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.09 2.04 2.51 -51.93 -0.13 1.91 16 27 H 0.06 1.17 8.02 -51.93 -0.42 0.75 16 28 H 0.17 3.10 5.66 -52.49 -0.30 2.80 16 29 H 0.17 1.92 8.06 -52.48 -0.42 1.50 16 30 H 0.06 0.97 7.92 -51.93 -0.41 0.55 16 31 H 0.05 0.82 7.86 -51.93 -0.41 0.41 16 32 H 0.08 1.50 6.27 -51.93 -0.33 1.18 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.70 7.21 -51.92 -0.37 1.32 16 38 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 323.39 15.07 4.87 4.87 Total: -1.00 -26.93 323.39 -7.43 -34.35 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.40 Total: 1.32 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.86 Total: -10.06 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.60 Total: -37.69 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 0.11 Total: -8.90 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.27 Total: 16.90 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.47 Total: -0.79 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.93 -7.43 -34.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529532595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.508 kcal (2) G-P(sol) polarization free energy of solvation -26.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds