Wall clock time and date at job start Tue Mar 31 2020 13:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47388 * 2 1 4 4 N 1.46503 * 109.46971 * 120.00199 * 2 1 3 5 5 C 1.46508 * 119.99649 * 304.66410 * 4 2 1 6 6 C 1.50694 * 109.47517 * 263.32073 * 5 4 2 7 7 H 1.08005 * 120.00115 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00269 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99645 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00000 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46731 * 90.00573 * 10 8 6 12 12 H 1.48497 * 109.47271 * 210.00019 * 10 8 6 13 13 H 1.48495 * 109.47500 * 330.00557 * 10 8 6 14 14 C 1.34772 * 120.00325 * 124.66804 * 4 2 1 15 15 O 1.21768 * 119.99757 * 4.26609 * 14 4 2 16 16 C 1.46226 * 120.00113 * 184.26086 * 14 4 2 17 17 C 1.37946 * 125.83589 * 173.91822 * 16 14 4 18 18 C 1.39585 * 106.90360 * 180.02562 * 17 16 14 19 19 C 1.38020 * 106.95926 * 359.97438 * 18 17 16 20 20 C 1.46799 * 125.78363 * 179.97438 * 19 18 17 21 21 C 1.36352 * 125.33909 * 179.97438 * 20 19 18 22 22 C 1.37643 * 114.42266 * 180.02562 * 21 20 19 23 23 C 1.33793 * 115.20625 * 0.02562 * 22 21 20 24 24 S 1.75822 * 109.97375 * 359.97438 * 23 22 21 25 25 O 1.34480 * 108.43449 * 0.22807 * 19 18 17 26 26 H 1.08998 * 109.47554 * 299.99956 * 1 2 3 27 27 H 1.09001 * 109.47146 * 60.00479 * 1 2 3 28 28 H 1.09005 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47554 * 240.00044 * 2 1 3 30 30 H 1.08994 * 109.46928 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.46828 * 300.00352 * 3 2 1 32 32 H 1.09008 * 109.46767 * 59.99445 * 3 2 1 33 33 H 1.08996 * 109.46904 * 23.32817 * 5 4 2 34 34 H 1.09000 * 109.46437 * 143.32269 * 5 4 2 35 35 H 0.96998 * 119.99566 * 180.02562 * 9 8 6 36 36 H 1.08005 * 126.54603 * 359.97168 * 17 16 14 37 37 H 1.07997 * 126.52133 * 180.02562 * 18 17 16 38 38 H 1.08000 * 122.78831 * 0.04024 * 21 20 19 39 39 H 1.07997 * 122.39525 * 179.97438 * 22 21 20 40 40 H 1.07997 * 125.00790 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 1.5820 -0.2525 2.5244 6 6 2.6186 0.6678 3.1155 7 1 3.5129 0.9032 2.5574 8 6 2.4250 1.2102 4.3682 9 7 1.3359 0.9240 5.0475 10 14 3.7104 2.3503 5.1011 11 1 3.4038 3.7523 4.7192 12 1 3.6963 2.2260 6.5808 13 1 5.0528 1.9792 4.5859 14 6 2.8688 -1.7290 1.0748 15 8 3.2923 -2.0440 -0.0225 16 6 3.2831 -2.4773 2.2609 17 6 4.0486 -3.6248 2.2652 18 6 4.2049 -4.0034 3.5996 19 6 3.5297 -3.0732 4.3637 20 6 3.4264 -3.0774 5.8281 21 6 2.7570 -2.1531 6.5741 22 6 2.8062 -2.3738 7.9319 23 6 3.4994 -3.4543 8.3087 24 16 4.1477 -4.2750 6.8954 25 8 2.9778 -2.1655 3.5391 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4424 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.6328 0.2766 2.4388 34 1 1.4567 -1.1213 3.1705 35 1 1.1995 1.3058 5.9286 36 1 4.4496 -4.1337 1.4011 37 1 4.7510 -4.8606 3.9648 38 1 2.2316 -1.3173 6.1361 39 1 2.3208 -1.7210 8.6422 40 1 3.6394 -3.7754 9.3303 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543071456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:32 Heat of formation + Delta-G solvation = 1.447764 kcal Electronic energy + Delta-G solvation = -25127.326723 eV Core-core repulsion = 21614.244986 eV Total energy + Delta-G solvation = -3513.081737 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.45971 -40.69180 -38.53441 -37.58755 -34.91560 -34.12338 -33.21527 -32.13969 -29.26183 -28.83781 -28.07766 -25.79299 -24.97583 -23.86816 -22.69426 -21.87495 -20.38951 -20.05354 -18.92702 -18.59567 -18.27836 -17.35654 -17.20862 -16.70205 -16.41659 -15.77293 -15.44485 -15.07696 -14.78762 -14.34447 -14.19443 -14.13151 -14.05698 -13.95894 -13.88814 -13.46558 -13.30614 -13.10327 -13.01801 -12.89919 -12.80772 -12.52274 -12.30774 -12.11750 -11.87671 -11.68197 -11.53077 -11.21148 -11.05315 -10.55924 -10.50501 -9.58109 -9.42288 -8.77501 -8.14792 -6.23506 -0.66390 0.37234 0.40215 0.94164 1.33398 1.33721 1.37089 1.44439 1.85141 1.97986 2.19333 2.29659 2.44449 3.15652 3.45342 3.71412 3.90887 4.03677 4.22073 4.22500 4.37662 4.44105 4.61113 4.62845 4.67162 4.71316 4.78761 4.79586 4.90267 4.95916 5.08276 5.11193 5.23083 5.31077 5.40458 5.44016 5.44474 5.52592 5.70681 5.77713 6.03959 6.11352 6.42685 6.81828 7.11372 7.42974 8.91195 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.012095 B = 0.005868 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.533609 B = 4770.478677 C = 6337.600845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.126 3.874 3 C -0.145 4.145 4 N -0.583 5.583 5 C 0.251 3.749 6 C -0.522 4.522 7 H 0.038 0.962 8 C 0.040 3.960 9 N -0.904 5.904 10 Si 0.930 3.070 11 H -0.273 1.273 12 H -0.276 1.276 13 H -0.285 1.285 14 C 0.589 3.411 15 O -0.576 6.576 16 C -0.094 4.094 17 C -0.121 4.121 18 C -0.202 4.202 19 C 0.058 3.942 20 C -0.172 4.172 21 C -0.122 4.122 22 C -0.150 4.150 23 C -0.194 4.194 24 S 0.201 5.799 25 O -0.120 6.120 26 H 0.052 0.948 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.035 0.965 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.034 0.966 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.178 0.822 37 H 0.187 0.813 38 H 0.128 0.872 39 H 0.156 0.844 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.023 -8.850 3.895 9.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.202 4.202 4 N -0.312 5.312 5 C 0.131 3.869 6 C -0.561 4.561 7 H 0.056 0.944 8 C -0.161 4.161 9 N -0.544 5.544 10 Si 0.757 3.243 11 H -0.199 1.199 12 H -0.201 1.201 13 H -0.210 1.210 14 C 0.379 3.621 15 O -0.461 6.461 16 C -0.148 4.148 17 C -0.141 4.141 18 C -0.222 4.222 19 C 0.003 3.997 20 C -0.288 4.288 21 C -0.154 4.154 22 C -0.180 4.180 23 C -0.330 4.330 24 S 0.465 5.535 25 O -0.014 6.014 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.195 0.805 37 H 0.204 0.796 38 H 0.146 0.854 39 H 0.174 0.826 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.784 -9.952 3.405 10.881 hybrid contribution -0.290 2.309 0.642 2.414 sum 2.494 -7.643 4.048 9.001 Atomic orbital electron populations 1.22067 0.93178 1.02165 1.03321 1.21230 0.95462 0.93625 0.87299 1.22000 1.00185 0.95293 1.02767 1.48353 1.43520 1.29471 1.09834 1.19266 0.95314 0.94975 0.77305 1.21343 1.04965 1.28127 1.01644 0.94394 1.25258 0.96689 0.97330 0.96782 1.69977 1.26549 1.44726 1.13137 0.85991 0.80042 0.80106 0.78194 1.19896 1.20127 1.21019 1.16796 0.79168 0.80322 0.85830 1.90731 1.58631 1.70789 1.25905 1.22496 1.08594 1.00971 0.82742 1.22178 0.98437 0.94602 0.98925 1.22147 1.06009 1.02489 0.91545 1.20644 0.98564 0.91086 0.89425 1.22237 1.10313 1.04463 0.91793 1.21182 0.99708 0.99619 0.94868 1.20141 1.03171 1.00014 0.94631 1.26343 1.03483 0.99466 1.03690 1.83498 1.51021 1.24850 0.94105 1.84808 1.57176 1.43956 1.15440 0.92870 0.88572 0.92892 0.89272 0.94587 0.89212 0.92796 0.94828 0.94986 0.92517 0.80502 0.79590 0.85432 0.82604 0.77410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 9.10 71.98 0.65 -4.04 16 2 C 0.13 4.72 3.24 44.99 0.15 4.86 16 3 C -0.14 -5.15 8.92 71.98 0.64 -4.50 16 4 N -0.58 -26.21 2.38 -807.30 -1.92 -28.13 16 5 C 0.25 12.51 4.12 85.63 0.35 12.86 16 6 C -0.52 -27.90 7.51 25.60 0.19 -27.71 16 7 H 0.04 2.14 7.81 -2.91 -0.02 2.12 16 8 C 0.04 2.13 5.46 84.65 0.46 2.59 16 9 N -0.90 -48.55 12.85 21.45 0.28 -48.28 16 10 Si 0.93 43.10 29.54 68.60 2.03 45.12 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 14 C 0.59 27.33 7.56 86.32 0.65 27.98 16 15 O -0.58 -27.29 16.22 -4.57 -0.07 -27.37 16 16 C -0.09 -4.19 6.77 24.28 0.16 -4.02 16 17 C -0.12 -4.39 10.63 22.53 0.24 -4.15 16 18 C -0.20 -6.64 10.63 22.54 0.24 -6.40 16 19 C 0.06 2.29 7.15 24.46 0.17 2.47 16 20 C -0.17 -6.05 6.44 24.07 0.16 -5.90 16 21 C -0.12 -4.57 10.15 21.69 0.22 -4.35 16 22 C -0.15 -4.24 10.15 21.12 0.21 -4.03 16 23 C -0.19 -4.14 11.22 66.81 0.75 -3.39 16 24 S 0.20 4.72 23.06 -56.49 -1.30 3.42 16 25 O -0.12 -5.61 6.58 -11.93 -0.08 -5.68 16 26 H 0.05 1.82 6.50 -2.39 -0.02 1.81 16 27 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.09 3.32 6.93 -2.39 -0.02 3.31 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.05 2.14 7.29 -2.38 -0.02 2.12 16 33 H 0.03 1.72 6.20 -2.39 -0.01 1.71 16 34 H 0.03 1.75 5.36 -2.39 -0.01 1.74 16 35 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 36 H 0.18 5.50 8.06 -2.91 -0.02 5.47 16 37 H 0.19 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.13 5.87 7.62 -2.91 -0.02 5.85 16 39 H 0.16 3.84 8.06 -2.91 -0.02 3.81 16 40 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -64.51 351.80 5.25 -59.26 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 1.06 Total: 19.39 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 5.26 Total: -17.73 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -1.64 Total: -76.41 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.15 Total: -33.05 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.30 Total: 3.42 kcal Total: -64.51 5.25 -59.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543071456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.710 kcal (2) G-P(sol) polarization free energy of solvation -64.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds