Wall clock time and date at job start Tue Mar 31 2020 12:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52994 * 109.47630 * 2 1 4 4 C 1.50705 * 109.47109 * 239.99610 * 2 1 3 5 5 H 1.08005 * 120.00071 * 241.35108 * 4 2 1 6 6 C 1.37876 * 119.99934 * 61.34954 * 4 2 1 7 7 N 1.31512 * 119.99967 * 193.97385 * 6 4 2 8 8 Si 1.86795 * 120.00067 * 13.97832 * 6 4 2 9 9 H 1.48496 * 109.47324 * 84.54670 * 8 6 4 10 10 H 1.48497 * 109.47409 * 204.55164 * 8 6 4 11 11 H 1.48503 * 109.46994 * 324.54712 * 8 6 4 12 12 C 1.53005 * 109.46921 * 120.00008 * 2 1 3 13 13 N 1.46501 * 109.46851 * 299.99805 * 12 2 1 14 14 C 1.34777 * 119.99646 * 180.02562 * 13 12 2 15 15 O 1.21748 * 120.00389 * 359.97438 * 14 13 12 16 16 C 1.46311 * 119.99433 * 179.97438 * 14 13 12 17 17 C 1.36785 * 125.15356 * 179.97438 * 16 14 13 18 18 C 1.36627 * 114.76305 * 180.02562 * 17 16 14 19 19 C 1.36881 * 114.72482 * 0.26848 * 18 17 16 20 20 C 1.46945 * 125.16893 * 179.72539 * 19 18 17 21 21 C 1.36387 * 125.97097 * 179.97438 * 20 19 18 22 22 C 1.40716 * 106.71457 * 180.02562 * 21 20 19 23 23 C 1.34876 * 107.08913 * 0.02562 * 22 21 20 24 24 O 1.34267 * 108.73582 * 359.72785 * 23 22 21 25 25 S 1.75835 * 125.16026 * 359.97438 * 16 14 13 26 26 H 1.09004 * 109.47322 * 309.37000 * 1 2 3 27 27 H 1.09010 * 109.47043 * 69.36872 * 1 2 3 28 28 H 1.09006 * 109.47741 * 189.36785 * 1 2 3 29 29 H 1.09003 * 109.47597 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46945 * 300.00255 * 3 2 1 31 31 H 1.08998 * 109.47437 * 59.99676 * 3 2 1 32 32 H 0.97002 * 119.99934 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47017 * 180.02562 * 12 2 1 34 34 H 1.08993 * 109.47245 * 59.99604 * 12 2 1 35 35 H 0.97000 * 120.00134 * 359.97438 * 13 12 2 36 36 H 1.08002 * 122.61567 * 359.97438 * 17 16 14 37 37 H 1.07992 * 122.63579 * 180.02562 * 18 17 16 38 38 H 1.07993 * 126.64247 * 0.02562 * 21 20 19 39 39 H 1.08004 * 126.45559 * 180.02562 * 22 21 20 40 40 H 1.07998 * 125.63000 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6351 -1.6012 -1.1315 6 6 1.7223 -0.2235 -2.4825 7 7 1.9157 -0.9727 -3.5459 8 14 1.0276 1.5005 -2.6685 9 1 2.1417 2.4814 -2.7085 10 1 0.2470 1.5864 -3.9288 11 1 0.1418 1.8042 -1.5160 12 6 2.0399 -0.7213 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 1.8775 -0.4908 3.6695 15 8 2.5774 -1.4807 3.7813 16 6 1.3902 0.1994 4.8641 17 6 1.6548 -0.1748 6.1529 18 6 1.0907 0.6231 7.1077 19 6 0.3479 1.6636 6.6186 20 6 -0.3620 2.6555 7.4381 21 6 -1.1057 3.6979 6.9687 22 6 -1.5970 4.3840 8.0947 23 6 -1.1361 3.7375 9.1850 24 8 -0.3956 2.6913 8.7852 25 16 0.3757 1.6355 4.8607 26 1 -0.3634 0.6519 0.7945 27 1 -0.3634 0.3621 -0.9618 28 1 -0.3635 -1.0140 0.1673 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6973 -0.6303 -4.4268 33 1 3.1299 -0.7209 1.2495 34 1 1.6765 -1.7489 1.2493 35 1 0.9942 0.7583 2.3564 36 1 2.2616 -1.0344 6.3965 37 1 1.2176 0.4445 8.1652 38 1 -1.2831 3.9483 5.9333 39 1 -2.2248 5.2628 8.0873 40 1 -1.3342 4.0128 10.2104 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:12 Heat of formation + Delta-G solvation = 26.335157 kcal Electronic energy + Delta-G solvation = -23379.326884 eV Core-core repulsion = 19867.324346 eV Total energy + Delta-G solvation = -3512.002539 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.87781 -39.62854 -37.69626 -36.62681 -33.51594 -33.42896 -31.85867 -31.44261 -28.59592 -26.46923 -26.23920 -25.17166 -24.45820 -22.33378 -21.57940 -21.13757 -19.62467 -19.19887 -18.45859 -17.20626 -16.45172 -16.16785 -16.13118 -15.71910 -15.12822 -15.02798 -14.85043 -14.23028 -13.56824 -13.52935 -13.32027 -13.11464 -13.02449 -12.86901 -12.77864 -12.64864 -12.34298 -12.23955 -12.08487 -11.38038 -11.29596 -10.49190 -10.43397 -10.37760 -10.21576 -10.11314 -9.87271 -9.86295 -9.17344 -8.91428 -8.72920 -8.69246 -8.49389 -8.13322 -6.17578 -4.15256 -0.14288 0.91782 1.41387 1.49148 2.06124 2.54734 2.69193 3.21618 3.28542 3.30813 3.36551 3.42226 4.13221 4.32768 4.55858 4.60565 4.87316 5.00999 5.12627 5.12831 5.33901 5.44172 5.53744 5.65718 5.73128 5.91253 5.99207 5.99831 6.00585 6.08904 6.30202 6.41604 6.46222 6.56892 6.63494 6.64816 6.65010 6.88671 7.15611 7.37480 7.67475 7.72824 8.34047 8.43106 8.87529 9.45970 10.95390 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.002947 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.385866 B = 9499.574692 C =10582.260170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.028 3.972 3 C -0.149 4.149 4 C -0.513 4.513 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.715 5.715 14 C 0.579 3.421 15 O -0.530 6.530 16 C -0.239 4.239 17 C -0.063 4.063 18 C -0.121 4.121 19 C -0.124 4.124 20 C 0.055 3.945 21 C -0.189 4.189 22 C -0.208 4.208 23 C -0.031 4.031 24 O -0.165 6.165 25 S 0.211 5.789 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.028 0.972 32 H 0.265 0.735 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.393 0.607 36 H 0.158 0.842 37 H 0.151 0.849 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.154 10.948 24.007 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.551 4.551 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.717 3.283 9 H -0.213 1.213 10 H -0.233 1.233 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.366 5.366 14 C 0.364 3.636 15 O -0.409 6.409 16 C -0.360 4.360 17 C -0.095 4.095 18 C -0.152 4.152 19 C -0.242 4.242 20 C 0.004 3.996 21 C -0.210 4.210 22 C -0.227 4.227 23 C -0.100 4.100 24 O -0.061 6.061 25 S 0.479 5.521 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.228 0.772 36 H 0.175 0.825 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.171 0.829 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.130 10.873 22.817 26.262 hybrid contribution -0.144 0.747 0.776 1.087 sum -7.274 11.620 23.593 27.287 Atomic orbital electron populations 1.22320 0.97804 0.99953 1.00048 1.18735 0.92572 0.92292 0.93719 1.22382 1.01360 0.98286 0.98599 1.20688 1.34199 1.12370 0.87876 0.90431 1.24966 0.94644 0.97292 0.95778 1.69946 1.48025 1.35902 0.98745 0.87309 0.79386 0.85577 0.76055 1.21282 1.23327 1.17507 1.21626 0.98903 0.95950 0.81584 1.46250 1.52623 1.31632 1.06075 1.16871 0.80745 0.83948 0.82045 1.90843 1.38109 1.25647 1.86336 1.24843 1.09597 1.02973 0.98629 1.20467 0.99020 1.00364 0.89671 1.20503 0.98783 0.94463 1.01491 1.22338 1.05695 0.99791 0.96414 1.19235 1.02452 0.97547 0.80400 1.21899 1.01747 0.96599 1.00708 1.21759 1.05679 1.03495 0.91765 1.24229 0.97016 0.88387 1.00401 1.84090 1.57357 1.43301 1.21331 1.84067 1.46223 1.23726 0.98061 0.96069 0.92330 0.93231 0.92599 0.93866 0.95330 0.92507 0.91476 0.91363 0.77158 0.82477 0.83125 0.82976 0.82857 0.77556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 7.53 37.15 0.28 -2.62 16 2 C 0.03 0.60 0.50 -155.66 -0.08 0.53 16 3 C -0.15 -3.00 7.52 37.15 0.28 -2.72 16 4 C -0.51 -13.61 8.62 -34.44 -0.30 -13.90 16 5 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 6 C 0.08 2.09 5.32 -17.82 -0.09 2.00 16 7 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 8 Si 0.88 20.81 22.79 -169.99 -3.87 16.94 16 9 H -0.29 -6.69 7.10 56.52 0.40 -6.29 16 10 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.25 -5.31 4.65 56.52 0.26 -5.05 16 12 C 0.14 2.80 4.49 -4.04 -0.02 2.79 16 13 N -0.72 -12.01 5.00 -61.73 -0.31 -12.32 16 14 C 0.58 9.79 7.77 -13.01 -0.10 9.69 16 15 O -0.53 -10.68 16.81 5.15 0.09 -10.59 16 16 C -0.24 -3.25 6.43 -36.86 -0.24 -3.49 16 17 C -0.06 -0.75 9.87 -40.69 -0.40 -1.16 16 18 C -0.12 -1.28 10.12 -40.66 -0.41 -1.69 16 19 C -0.12 -1.35 6.45 -36.55 -0.24 -1.59 16 20 C 0.06 0.58 7.12 -36.72 -0.26 0.32 16 21 C -0.19 -1.74 10.62 -39.31 -0.42 -2.16 16 22 C -0.21 -1.54 10.88 -39.84 -0.43 -1.97 16 23 C -0.03 -0.22 12.08 29.54 0.36 0.14 16 24 O -0.16 -1.60 10.66 4.45 0.05 -1.56 16 25 S 0.21 2.32 22.05 -107.50 -2.37 -0.05 16 26 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 27 H 0.06 1.25 4.30 -51.92 -0.22 1.03 16 28 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.04 0.91 2.25 -51.93 -0.12 0.80 16 31 H 0.03 0.47 6.86 -51.93 -0.36 0.12 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 35 H 0.39 5.87 5.33 -40.82 -0.22 5.65 16 36 H 0.16 1.77 8.03 -52.49 -0.42 1.35 16 37 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.15 0.77 8.06 -52.48 -0.42 0.34 16 40 H 0.21 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 340.42 15.07 5.13 5.13 Total: -1.00 -31.59 340.42 -7.37 -38.96 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.78 Total: 4.90 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.07 Total: -15.83 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.47 Total: -37.90 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.13 Total: -12.15 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -3.87 Total: 16.94 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.37 Total: -0.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.59 -7.37 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.294 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds