Wall clock time and date at job start Tue Mar 31 2020 12:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52994 * 109.47630 * 2 1 4 4 C 1.50705 * 109.47109 * 239.99610 * 2 1 3 5 5 H 1.08005 * 120.00071 * 241.35108 * 4 2 1 6 6 C 1.37876 * 119.99934 * 61.34954 * 4 2 1 7 7 N 1.31512 * 119.99967 * 193.97385 * 6 4 2 8 8 Si 1.86795 * 120.00067 * 13.97832 * 6 4 2 9 9 H 1.48496 * 109.47324 * 84.54670 * 8 6 4 10 10 H 1.48497 * 109.47409 * 204.55164 * 8 6 4 11 11 H 1.48503 * 109.46994 * 324.54712 * 8 6 4 12 12 C 1.53005 * 109.46921 * 120.00008 * 2 1 3 13 13 N 1.46501 * 109.46851 * 299.99805 * 12 2 1 14 14 C 1.34777 * 119.99646 * 180.02562 * 13 12 2 15 15 O 1.21748 * 120.00389 * 359.97438 * 14 13 12 16 16 C 1.46311 * 119.99433 * 179.97438 * 14 13 12 17 17 C 1.36785 * 125.15356 * 179.97438 * 16 14 13 18 18 C 1.36627 * 114.76305 * 180.02562 * 17 16 14 19 19 C 1.36881 * 114.72482 * 0.26848 * 18 17 16 20 20 C 1.46945 * 125.16893 * 179.72539 * 19 18 17 21 21 C 1.36387 * 125.97097 * 179.97438 * 20 19 18 22 22 C 1.40716 * 106.71457 * 180.02562 * 21 20 19 23 23 C 1.34876 * 107.08913 * 0.02562 * 22 21 20 24 24 O 1.34267 * 108.73582 * 359.72785 * 23 22 21 25 25 S 1.75835 * 125.16026 * 359.97438 * 16 14 13 26 26 H 1.09004 * 109.47322 * 309.37000 * 1 2 3 27 27 H 1.09010 * 109.47043 * 69.36872 * 1 2 3 28 28 H 1.09006 * 109.47741 * 189.36785 * 1 2 3 29 29 H 1.09003 * 109.47597 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46945 * 300.00255 * 3 2 1 31 31 H 1.08998 * 109.47437 * 59.99676 * 3 2 1 32 32 H 0.97002 * 119.99934 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.47017 * 180.02562 * 12 2 1 34 34 H 1.08993 * 109.47245 * 59.99604 * 12 2 1 35 35 H 0.97000 * 120.00134 * 359.97438 * 13 12 2 36 36 H 1.08002 * 122.61567 * 359.97438 * 17 16 14 37 37 H 1.07992 * 122.63579 * 180.02562 * 18 17 16 38 38 H 1.07993 * 126.64247 * 0.02562 * 21 20 19 39 39 H 1.08004 * 126.45559 * 180.02562 * 22 21 20 40 40 H 1.07998 * 125.63000 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6351 -1.6012 -1.1315 6 6 1.7223 -0.2235 -2.4825 7 7 1.9157 -0.9727 -3.5459 8 14 1.0276 1.5005 -2.6685 9 1 2.1417 2.4814 -2.7085 10 1 0.2470 1.5864 -3.9288 11 1 0.1418 1.8042 -1.5160 12 6 2.0399 -0.7213 1.2493 13 7 1.5515 -0.0306 2.4454 14 6 1.8775 -0.4908 3.6695 15 8 2.5774 -1.4807 3.7813 16 6 1.3902 0.1994 4.8641 17 6 1.6548 -0.1748 6.1529 18 6 1.0907 0.6231 7.1077 19 6 0.3479 1.6636 6.6186 20 6 -0.3620 2.6555 7.4381 21 6 -1.1057 3.6979 6.9687 22 6 -1.5970 4.3840 8.0947 23 6 -1.1361 3.7375 9.1850 24 8 -0.3956 2.6913 8.7852 25 16 0.3757 1.6355 4.8607 26 1 -0.3634 0.6519 0.7945 27 1 -0.3634 0.3621 -0.9618 28 1 -0.3635 -1.0140 0.1673 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6973 -0.6303 -4.4268 33 1 3.1299 -0.7209 1.2495 34 1 1.6765 -1.7489 1.2493 35 1 0.9942 0.7583 2.3564 36 1 2.2616 -1.0344 6.3965 37 1 1.2176 0.4445 8.1652 38 1 -1.2831 3.9483 5.9333 39 1 -2.2248 5.2628 8.0873 40 1 -1.3342 4.0128 10.2104 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590916473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:11 Heat of formation + Delta-G solvation = 5.686383 kcal Electronic energy + Delta-G solvation = -23380.222282 eV Core-core repulsion = 19867.324346 eV Total energy + Delta-G solvation = -3512.897937 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.49437 -40.98290 -38.84271 -38.07393 -35.10436 -34.12968 -33.53959 -32.48008 -29.55222 -28.06042 -27.58817 -26.98462 -25.63217 -23.06491 -22.33517 -22.23452 -21.11325 -20.12720 -19.74436 -18.19333 -17.92033 -17.22207 -17.10431 -17.02387 -16.57313 -16.48620 -16.00571 -15.21676 -15.05566 -14.78446 -14.70125 -14.37099 -14.06255 -13.94402 -13.90344 -13.77991 -13.66596 -13.56362 -13.09047 -12.98883 -12.40490 -12.26197 -12.11955 -11.97698 -11.79605 -11.31252 -11.11506 -11.05868 -10.63508 -10.61869 -10.41700 -10.15458 -9.72408 -8.88632 -8.30200 -6.32219 -1.02389 0.07002 0.59076 0.65341 1.36853 1.36993 1.37938 1.51090 1.78482 2.08553 2.09312 2.11002 2.34753 3.05598 3.45954 3.71643 3.97682 4.03768 4.05611 4.19224 4.28842 4.35887 4.37108 4.65139 4.70158 4.78385 4.81534 4.88824 4.90194 4.92280 4.97928 5.02224 5.10126 5.13020 5.18612 5.31544 5.47420 5.50756 5.68911 5.76374 6.03945 6.27858 6.42375 6.71837 7.05165 7.32599 8.86823 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.002947 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.385866 B = 9499.574692 C =10582.260170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.027 3.973 3 C -0.150 4.150 4 C -0.517 4.517 5 H 0.030 0.970 6 C 0.017 3.983 7 N -0.945 5.945 8 Si 0.943 3.057 9 H -0.281 1.281 10 H -0.314 1.314 11 H -0.204 1.204 12 C 0.155 3.845 13 N -0.707 5.707 14 C 0.583 3.417 15 O -0.573 6.573 16 C -0.281 4.281 17 C -0.049 4.049 18 C -0.133 4.133 19 C -0.111 4.111 20 C 0.018 3.982 21 C -0.185 4.185 22 C -0.222 4.222 23 C -0.017 4.017 24 O -0.179 6.179 25 S 0.247 5.753 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.265 0.735 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.406 0.594 36 H 0.157 0.843 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.178 0.822 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.447 14.659 27.175 32.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 C -0.207 4.207 4 C -0.555 4.555 5 H 0.048 0.952 6 C -0.180 4.180 7 N -0.584 5.584 8 Si 0.772 3.228 9 H -0.208 1.208 10 H -0.244 1.244 11 H -0.128 1.128 12 C 0.032 3.968 13 N -0.359 5.359 14 C 0.370 3.630 15 O -0.455 6.455 16 C -0.402 4.402 17 C -0.082 4.082 18 C -0.163 4.163 19 C -0.230 4.230 20 C -0.033 4.033 21 C -0.206 4.206 22 C -0.241 4.241 23 C -0.085 4.085 24 O -0.075 6.075 25 S 0.516 5.484 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.243 0.757 36 H 0.175 0.825 37 H 0.187 0.813 38 H 0.179 0.821 39 H 0.195 0.805 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -9.438 14.606 26.017 31.294 hybrid contribution 0.532 -0.388 -0.004 0.658 sum -8.906 14.219 26.012 30.954 Atomic orbital electron populations 1.22253 0.96073 1.00781 1.00996 1.18667 0.93830 0.93134 0.91779 1.22326 1.01257 0.96815 1.00266 1.20980 1.33030 1.11149 0.90377 0.95185 1.25850 0.95363 1.01600 0.95198 1.70108 1.50586 1.38286 0.99424 0.86359 0.79487 0.79959 0.77029 1.20790 1.24389 1.12752 1.21177 0.97829 0.95210 0.82581 1.45969 1.52882 1.31833 1.05173 1.17238 0.79716 0.83344 0.82701 1.90814 1.40065 1.27652 1.87007 1.24436 1.12851 1.05399 0.97470 1.20601 0.98014 1.00107 0.89527 1.20603 0.99135 0.94397 1.02130 1.22592 1.04329 0.99385 0.96696 1.19256 1.04499 0.98618 0.80971 1.22245 1.00567 0.95985 1.01846 1.22133 1.06303 1.04442 0.91201 1.25141 0.94622 0.86620 1.02157 1.84090 1.58028 1.44409 1.20990 1.83758 1.44927 1.21664 0.98005 0.91901 0.93251 0.93807 0.93159 0.94359 0.91171 0.92632 0.93165 0.93356 0.75729 0.82519 0.81298 0.82097 0.80478 0.73654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 7.53 71.98 0.54 -4.91 16 2 C 0.03 1.15 0.50 -52.93 -0.03 1.12 16 3 C -0.15 -5.60 7.52 71.98 0.54 -5.06 16 4 C -0.52 -28.40 8.62 25.60 0.22 -28.18 16 5 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 6 C 0.02 0.98 5.32 84.65 0.45 1.43 16 7 N -0.94 -58.41 13.96 21.45 0.30 -58.11 16 8 Si 0.94 42.26 22.79 68.60 1.56 43.83 16 9 H -0.28 -12.33 7.10 99.48 0.71 -11.62 16 10 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 11 H -0.20 -7.67 4.65 99.48 0.46 -7.21 16 12 C 0.16 6.27 4.49 86.38 0.39 6.66 16 13 N -0.71 -23.01 5.00 -467.40 -2.34 -25.35 16 14 C 0.58 19.62 7.77 86.34 0.67 20.29 16 15 O -0.57 -23.79 16.81 -4.50 -0.08 -23.86 16 16 C -0.28 -7.34 6.43 24.03 0.15 -7.18 16 17 C -0.05 -1.13 9.87 21.55 0.21 -0.92 16 18 C -0.13 -2.56 10.12 21.57 0.22 -2.34 16 19 C -0.11 -2.17 6.45 24.23 0.16 -2.01 16 20 C 0.02 0.32 7.12 24.12 0.17 0.49 16 21 C -0.19 -2.81 10.62 22.44 0.24 -2.57 16 22 C -0.22 -2.41 10.88 22.10 0.24 -2.17 16 23 C -0.02 -0.16 12.08 67.05 0.81 0.64 16 24 O -0.18 -2.94 10.66 -6.98 -0.07 -3.01 16 25 S 0.25 4.82 22.05 -56.49 -1.25 3.57 16 26 H 0.06 1.85 7.13 -2.39 -0.02 1.84 16 27 H 0.05 1.96 4.30 -2.38 -0.01 1.95 16 28 H 0.04 1.69 8.12 -2.38 -0.02 1.67 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.48 2.25 -2.38 -0.01 1.47 16 31 H 0.07 2.03 6.86 -2.39 -0.02 2.02 16 32 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.41 10.94 5.33 -92.71 -0.49 10.44 16 36 H 0.16 3.51 8.03 -2.91 -0.02 3.49 16 37 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 38 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.25 0.09 8.06 -2.91 -0.02 0.06 16 Total: -1.00 -72.72 340.42 3.46 -69.25 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 0.34 Total: 18.38 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 4.99 Total: -24.70 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -2.04 Total: -83.45 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.15 Total: -26.87 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.56 Total: 43.83 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.25 Total: 3.57 kcal Total: -72.72 3.46 -69.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.939 kcal (2) G-P(sol) polarization free energy of solvation -72.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds