Wall clock time and date at job start Tue Mar 31 2020 12:14:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31628 * 1
3 3 Si 1.86798 * 119.99975 * 2 1
4 4 H 1.48501 * 109.47587 * 270.00302 * 3 2 1
5 5 H 1.48504 * 109.47031 * 30.00116 * 3 2 1
6 6 H 1.48503 * 109.47127 * 150.00034 * 3 2 1
7 7 C 1.38805 * 119.99743 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99444 * 201.31378 * 7 2 1
9 9 N 1.36930 * 120.00382 * 21.31564 * 7 2 1
10 10 C 1.46500 * 120.00281 * 37.17340 * 9 7 2
11 11 C 1.50701 * 109.47180 * 89.99859 * 10 9 7
12 12 C 1.33386 * 122.54088 * 269.97928 * 11 10 9
13 13 S 1.75889 * 109.59207 * 179.77522 * 12 11 10
14 14 C 1.75883 * 90.96955 * 0.31955 * 13 12 11
15 15 C 1.50703 * 125.20045 * 179.97438 * 14 13 12
16 16 F 1.39903 * 109.46941 * 269.68850 * 15 14 13
17 17 F 1.39902 * 109.46962 * 149.69097 * 15 14 13
18 18 F 1.39895 * 109.47448 * 29.68729 * 15 14 13
19 19 C 1.33391 * 109.59301 * 359.67957 * 14 13 12
20 20 C 1.46509 * 120.00247 * 217.17537 * 9 7 2
21 21 C 1.54271 * 110.02938 * 61.22032 * 20 9 7
22 22 C 1.54970 * 104.15797 * 217.13933 * 21 20 9
23 23 C 1.54889 * 102.77550 * 37.88979 * 22 21 20
24 24 C 1.53874 * 110.02743 * 304.00656 * 20 9 7
25 25 H 0.97003 * 119.99518 * 354.94619 * 1 2 3
26 26 H 1.08998 * 109.46853 * 330.00179 * 10 9 7
27 27 H 1.08998 * 109.47314 * 210.00145 * 10 9 7
28 28 H 1.07997 * 125.20459 * 0.05980 * 12 11 10
29 29 H 1.08004 * 122.53478 * 180.26806 * 19 14 13
30 30 H 1.08996 * 110.01689 * 182.61714 * 20 9 7
31 31 H 1.08994 * 110.48729 * 335.78431 * 21 20 9
32 32 H 1.08995 * 110.48455 * 98.43447 * 21 20 9
33 33 H 1.09006 * 110.71863 * 279.57766 * 22 21 20
34 34 H 1.08996 * 110.91856 * 156.29505 * 22 21 20
35 35 H 1.09003 * 110.48249 * 203.40495 * 23 22 21
36 36 H 1.08993 * 110.60142 * 80.81826 * 23 22 21
37 37 H 1.09004 * 110.03009 * 238.56367 * 24 20 9
38 38 H 1.09000 * 110.03748 * 359.94900 * 24 20 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0465 -1.4000
5 1 1.4477 2.6527 0.7001
6 1 3.5478 1.4402 0.7000
7 6 2.0102 -1.2021 -0.0005
8 1 3.0349 -1.2342 0.3394
9 7 1.3959 -2.3472 -0.4321
10 6 0.4630 -2.2974 -1.5606
11 6 1.2176 -2.5181 -2.8463
12 6 1.7456 -1.5151 -3.5495
13 16 2.5503 -2.1550 -4.9766
14 6 2.1030 -3.7963 -4.5296
15 6 2.4504 -5.0355 -5.3137
16 9 1.4334 -5.3039 -6.2362
17 9 2.5840 -6.1188 -4.4387
18 9 3.6560 -4.8341 -5.9942
19 6 1.4148 -3.7769 -3.3871
20 6 1.6714 -3.6224 0.2347
21 6 1.2473 -3.5465 1.7160
22 6 2.3316 -4.3638 2.4630
23 6 3.6267 -3.9940 1.6983
24 6 3.1835 -3.9071 0.2232
25 1 -0.4849 0.8368 0.0740
26 1 -0.0230 -1.3222 -1.5874
27 1 -0.2908 -3.0759 -1.4435
28 1 1.6916 -0.4705 -3.2810
29 1 1.0402 -4.6754 -2.9194
30 1 1.1358 -4.4287 -0.2662
31 1 1.2453 -2.5121 2.0597
32 1 0.2650 -3.9977 1.8552
33 1 2.1297 -5.4323 2.3870
34 1 2.3988 -4.0582 3.5071
35 1 4.3798 -4.7718 1.8252
36 1 4.0116 -3.0326 2.0382
37 1 3.3816 -4.8522 -0.2824
38 1 3.7123 -3.0971 -0.2792
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000600122252.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:14:24
Heat of formation + Delta-G solvation = -106.228226 kcal
Electronic energy + Delta-G solvation = -25359.925543 eV
Core-core repulsion = 21300.317885 eV
Total energy + Delta-G solvation = -4059.607659 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.091 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-50.04796 -47.58142 -47.53700 -38.38311 -37.26628 -34.19504 -31.35462 -30.45585
-27.88427 -27.02597 -26.15137 -25.72625 -22.95667 -21.50141 -19.93632 -19.16163
-19.14604 -18.41933 -18.40292 -17.68635 -16.31015 -15.92193 -15.37456 -14.75011
-14.50993 -14.40605 -14.25298 -13.99180 -13.95781 -13.71915 -13.71270 -13.66533
-13.06199 -12.59121 -12.44718 -12.41046 -12.14715 -12.00146 -11.25386 -11.21307
-10.98493 -10.78043 -10.47708 -10.47044 -10.33218 -10.29129 -10.13479 -9.96680
-9.90196 -9.57352 -8.63668 -8.57217 -8.01188 -6.64984 -5.93983 -3.44763
1.05312 1.66265 2.21874 2.82346 3.06240 3.25726 3.35389 3.36912
3.88459 4.32210 4.36711 4.48696 5.16852 5.32619 5.42151 5.42990
5.55147 5.72411 5.76495 5.82173 6.10051 6.25887 6.27355 6.29878
6.38770 6.44014 6.51349 6.57484 6.59454 6.80527 6.82182 6.94885
7.03893 7.17327 7.32394 7.50400 7.77037 8.42941 9.06709 9.69216
10.27366 11.08732
Molecular weight = 319.09amu
Principal moments of inertia in cm(-1)
A = 0.012692 B = 0.005336 C = 0.004229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2205.631603 B = 5245.851082 C = 6618.799435
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.886 5.886
2 C 0.014 3.986
3 Si 0.891 3.109
4 H -0.286 1.286
5 H -0.290 1.290
6 H -0.277 1.277
7 C -0.246 4.246
8 H 0.063 0.937
9 N -0.566 5.566
10 C 0.193 3.807
11 C -0.112 4.112
12 C -0.157 4.157
13 S 0.113 5.887
14 C -0.326 4.326
15 C 0.546 3.454
16 F -0.177 7.177
17 F -0.174 7.174
18 F -0.178 7.178
19 C -0.033 4.033
20 C 0.172 3.828
21 C -0.129 4.129
22 C -0.124 4.124
23 C -0.117 4.117
24 C -0.133 4.133
25 H 0.258 0.742
26 H 0.109 0.891
27 H 0.038 0.962
28 H 0.170 0.830
29 H 0.140 0.860
30 H 0.048 0.952
31 H 0.085 0.915
32 H 0.045 0.955
33 H 0.053 0.947
34 H 0.053 0.947
35 H 0.047 0.953
36 H 0.061 0.939
37 H 0.043 0.957
38 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.872 -7.555 -6.212 10.194
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.528 5.528
2 C -0.186 4.186
3 Si 0.721 3.279
4 H -0.213 1.213
5 H -0.217 1.217
6 H -0.202 1.202
7 C -0.376 4.376
8 H 0.081 0.919
9 N -0.284 5.284
10 C 0.064 3.936
11 C -0.126 4.126
12 C -0.294 4.294
13 S 0.378 5.622
14 C -0.444 4.444
15 C 0.490 3.510
16 F -0.159 7.159
17 F -0.155 7.155
18 F -0.160 7.160
19 C -0.068 4.068
20 C 0.064 3.936
21 C -0.168 4.168
22 C -0.162 4.162
23 C -0.155 4.155
24 C -0.173 4.173
25 H 0.068 0.932
26 H 0.127 0.873
27 H 0.056 0.944
28 H 0.187 0.813
29 H 0.158 0.842
30 H 0.066 0.934
31 H 0.103 0.897
32 H 0.064 0.936
33 H 0.071 0.929
34 H 0.072 0.928
35 H 0.066 0.934
36 H 0.080 0.920
37 H 0.062 0.938
38 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 3.564 -6.771 -7.488 10.706
hybrid contribution -0.111 0.076 1.057 1.066
sum 3.452 -6.695 -6.431 9.905
Atomic orbital electron populations
1.69877 1.05454 1.26147 1.51289 1.25164 0.95005 0.98488 0.99961
0.86466 0.79658 0.83845 0.77926 1.21280 1.21682 1.20224 1.18944
0.94565 0.84989 1.39107 0.91928 1.43923 1.51498 1.03204 1.29744
1.19879 0.89760 1.03642 0.80345 1.20295 1.02456 0.90081 0.99740
1.25790 1.02743 1.03985 0.96878 1.83983 1.56489 0.95209 1.26512
1.24294 1.17638 0.96966 1.05456 1.17286 0.74188 0.82505 0.77048
1.93210 1.60208 1.94629 1.67828 1.93194 1.95645 1.57428 1.69231
1.93187 1.46624 1.95047 1.81118 1.20125 0.94774 0.99698 0.92177
1.21073 0.92630 0.88105 0.91756 1.22794 0.96068 1.01175 0.96794
1.22448 0.96374 0.98963 0.98402 1.22242 0.96661 1.00266 0.96314
1.22564 0.98942 1.00221 0.95544 0.93222 0.87335 0.94366 0.81298
0.84185 0.93408 0.89656 0.93582 0.92861 0.92839 0.93433 0.91997
0.93785 0.91032
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -22.98 11.43 55.49 0.63 -22.35 16
2 C 0.01 0.36 4.96 -17.43 -0.09 0.27 16
3 Si 0.89 20.02 29.61 -169.99 -5.03 14.99 16
4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16
5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
7 C -0.25 -5.95 7.75 -15.06 -0.12 -6.06 16
8 H 0.06 1.57 7.01 -52.48 -0.37 1.20 16
9 N -0.57 -12.39 2.37 -165.75 -0.39 -12.78 16
10 C 0.19 4.02 5.51 -5.19 -0.03 3.99 16
11 C -0.11 -2.08 5.38 -106.25 -0.57 -2.65 16
12 C -0.16 -2.80 10.98 29.04 0.32 -2.48 16
13 S 0.11 1.75 23.05 -107.50 -2.48 -0.73 16
14 C -0.33 -5.18 5.95 -36.00 -0.21 -5.40 16
15 C 0.55 8.03 3.52 36.01 0.13 8.16 16
16 F -0.18 -2.56 17.30 2.25 0.04 -2.52 16
17 F -0.17 -2.55 16.93 2.25 0.04 -2.51 16
18 F -0.18 -2.61 17.05 2.25 0.04 -2.57 16
19 C -0.03 -0.55 9.50 -41.21 -0.39 -0.94 16
20 C 0.17 3.32 3.41 -66.80 -0.23 3.09 16
21 C -0.13 -2.43 6.43 -25.03 -0.16 -2.60 16
22 C -0.12 -1.97 6.91 -24.69 -0.17 -2.14 16
23 C -0.12 -1.91 6.83 -25.07 -0.17 -2.08 16
24 C -0.13 -2.40 6.15 -25.61 -0.16 -2.56 16
25 H 0.26 6.56 8.32 -40.82 -0.34 6.22 16
26 H 0.11 2.56 5.46 -51.93 -0.28 2.28 16
27 H 0.04 0.76 7.94 -51.93 -0.41 0.35 16
28 H 0.17 3.11 8.06 -52.49 -0.42 2.69 16
29 H 0.14 2.15 7.99 -52.48 -0.42 1.73 16
30 H 0.05 0.88 7.85 -51.93 -0.41 0.47 16
31 H 0.08 1.89 7.17 -51.93 -0.37 1.52 16
32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
36 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16
37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
38 H 0.07 1.44 6.79 -51.93 -0.35 1.09 16
LS Contribution 337.77 15.07 5.09 5.09
Total: -1.00 -24.34 337.77 -8.63 -32.96
By element:
Atomic # 1 Polarization: 6.51 SS G_CDS: -4.71 Total: 1.80 kcal
Atomic # 6 Polarization: -9.53 SS G_CDS: -1.85 Total: -11.39 kcal
Atomic # 7 Polarization: -35.37 SS G_CDS: 0.24 Total: -35.13 kcal
Atomic # 9 Polarization: -7.71 SS G_CDS: 0.12 Total: -7.60 kcal
Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.99 kcal
Atomic # 16 Polarization: 1.75 SS G_CDS: -2.48 Total: -0.73 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -24.34 -8.63 -32.96 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600122252.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -73.264 kcal
(2) G-P(sol) polarization free energy of solvation -24.339 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.228 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds