Wall clock time and date at job start Tue Mar 31 2020 12:14:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31628 * 1
3 3 Si 1.86798 * 119.99975 * 2 1
4 4 H 1.48501 * 109.47587 * 270.00302 * 3 2 1
5 5 H 1.48504 * 109.47031 * 30.00116 * 3 2 1
6 6 H 1.48503 * 109.47127 * 150.00034 * 3 2 1
7 7 C 1.38805 * 119.99743 * 180.02562 * 2 1 3
8 8 H 1.08003 * 119.99444 * 201.31378 * 7 2 1
9 9 N 1.36930 * 120.00382 * 21.31564 * 7 2 1
10 10 C 1.46500 * 120.00281 * 37.17340 * 9 7 2
11 11 C 1.50701 * 109.47180 * 89.99859 * 10 9 7
12 12 C 1.33386 * 122.54088 * 269.97928 * 11 10 9
13 13 S 1.75889 * 109.59207 * 179.77522 * 12 11 10
14 14 C 1.75883 * 90.96955 * 0.31955 * 13 12 11
15 15 C 1.50703 * 125.20045 * 179.97438 * 14 13 12
16 16 F 1.39903 * 109.46941 * 269.68850 * 15 14 13
17 17 F 1.39902 * 109.46962 * 149.69097 * 15 14 13
18 18 F 1.39895 * 109.47448 * 29.68729 * 15 14 13
19 19 C 1.33391 * 109.59301 * 359.67957 * 14 13 12
20 20 C 1.46509 * 120.00247 * 217.17537 * 9 7 2
21 21 C 1.54271 * 110.02938 * 61.22032 * 20 9 7
22 22 C 1.54970 * 104.15797 * 217.13933 * 21 20 9
23 23 C 1.54889 * 102.77550 * 37.88979 * 22 21 20
24 24 C 1.53874 * 110.02743 * 304.00656 * 20 9 7
25 25 H 0.97003 * 119.99518 * 354.94619 * 1 2 3
26 26 H 1.08998 * 109.46853 * 330.00179 * 10 9 7
27 27 H 1.08998 * 109.47314 * 210.00145 * 10 9 7
28 28 H 1.07997 * 125.20459 * 0.05980 * 12 11 10
29 29 H 1.08004 * 122.53478 * 180.26806 * 19 14 13
30 30 H 1.08996 * 110.01689 * 182.61714 * 20 9 7
31 31 H 1.08994 * 110.48729 * 335.78431 * 21 20 9
32 32 H 1.08995 * 110.48455 * 98.43447 * 21 20 9
33 33 H 1.09006 * 110.71863 * 279.57766 * 22 21 20
34 34 H 1.08996 * 110.91856 * 156.29505 * 22 21 20
35 35 H 1.09003 * 110.48249 * 203.40495 * 23 22 21
36 36 H 1.08993 * 110.60142 * 80.81826 * 23 22 21
37 37 H 1.09004 * 110.03009 * 238.56367 * 24 20 9
38 38 H 1.09000 * 110.03748 * 359.94900 * 24 20 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 2.4978 2.0465 -1.4000
5 1 1.4477 2.6527 0.7001
6 1 3.5478 1.4402 0.7000
7 6 2.0102 -1.2021 -0.0005
8 1 3.0349 -1.2342 0.3394
9 7 1.3959 -2.3472 -0.4321
10 6 0.4630 -2.2974 -1.5606
11 6 1.2176 -2.5181 -2.8463
12 6 1.7456 -1.5151 -3.5495
13 16 2.5503 -2.1550 -4.9766
14 6 2.1030 -3.7963 -4.5296
15 6 2.4504 -5.0355 -5.3137
16 9 1.4334 -5.3039 -6.2362
17 9 2.5840 -6.1188 -4.4387
18 9 3.6560 -4.8341 -5.9942
19 6 1.4148 -3.7769 -3.3871
20 6 1.6714 -3.6224 0.2347
21 6 1.2473 -3.5465 1.7160
22 6 2.3316 -4.3638 2.4630
23 6 3.6267 -3.9940 1.6983
24 6 3.1835 -3.9071 0.2232
25 1 -0.4849 0.8368 0.0740
26 1 -0.0230 -1.3222 -1.5874
27 1 -0.2908 -3.0759 -1.4435
28 1 1.6916 -0.4705 -3.2810
29 1 1.0402 -4.6754 -2.9194
30 1 1.1358 -4.4287 -0.2662
31 1 1.2453 -2.5121 2.0597
32 1 0.2650 -3.9977 1.8552
33 1 2.1297 -5.4323 2.3870
34 1 2.3988 -4.0582 3.5071
35 1 4.3798 -4.7718 1.8252
36 1 4.0116 -3.0326 2.0382
37 1 3.3816 -4.8522 -0.2824
38 1 3.7123 -3.0971 -0.2792
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000600122252.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:14:24
Heat of formation + Delta-G solvation = -114.627835 kcal
Electronic energy + Delta-G solvation = -25360.289778 eV
Core-core repulsion = 21300.317885 eV
Total energy + Delta-G solvation = -4059.971893 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 319.091 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-51.21564 -48.74746 -48.69630 -39.86901 -38.68670 -35.82750 -33.07581 -31.88944
-29.32055 -28.49679 -27.87729 -27.03442 -24.57099 -22.89186 -21.29358 -20.76384
-20.46872 -19.73458 -19.57086 -18.93150 -18.03865 -17.34759 -16.89267 -16.35075
-15.89919 -15.69451 -15.57640 -15.35979 -15.22399 -15.14812 -14.87753 -14.86527
-14.62244 -14.05277 -13.86742 -13.81755 -13.60070 -13.35386 -13.00968 -12.82278
-12.68754 -12.29221 -12.15812 -11.91355 -11.86367 -11.74920 -11.69733 -11.54708
-11.31201 -11.13950 -10.47198 -9.96836 -9.34139 -8.44083 -7.80947 -5.34309
-0.28896 0.36504 0.84191 1.42649 1.49059 1.53985 1.60953 1.66090
2.52405 2.65737 3.13904 3.28307 3.30991 3.75920 4.02096 4.03916
4.18975 4.33362 4.36211 4.46051 4.72333 4.76170 4.80728 4.92434
4.98036 4.99176 5.01817 5.22541 5.25245 5.33821 5.35036 5.53400
5.55199 5.67785 5.74056 5.77239 5.89108 6.56452 7.22935 7.92625
8.45105 9.18669
Molecular weight = 319.09amu
Principal moments of inertia in cm(-1)
A = 0.012692 B = 0.005336 C = 0.004229
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2205.631603 B = 5245.851082 C = 6618.799435
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C -0.024 4.024
3 Si 0.936 3.064
4 H -0.284 1.284
5 H -0.298 1.298
6 H -0.277 1.277
7 C -0.236 4.236
8 H 0.051 0.949
9 N -0.578 5.578
10 C 0.197 3.803
11 C -0.119 4.119
12 C -0.174 4.174
13 S 0.166 5.834
14 C -0.327 4.327
15 C 0.553 3.447
16 F -0.173 7.173
17 F -0.171 7.171
18 F -0.176 7.176
19 C -0.039 4.039
20 C 0.164 3.836
21 C -0.128 4.128
22 C -0.113 4.113
23 C -0.114 4.114
24 C -0.126 4.126
25 H 0.251 0.749
26 H 0.079 0.921
27 H 0.042 0.958
28 H 0.157 0.843
29 H 0.154 0.846
30 H 0.059 0.941
31 H 0.044 0.956
32 H 0.048 0.952
33 H 0.077 0.923
34 H 0.062 0.938
35 H 0.075 0.925
36 H 0.045 0.955
37 H 0.062 0.938
38 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.052 -9.408 -7.004 12.409
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.557 5.557
2 C -0.222 4.222
3 Si 0.766 3.234
4 H -0.210 1.210
5 H -0.224 1.224
6 H -0.202 1.202
7 C -0.367 4.367
8 H 0.068 0.932
9 N -0.296 5.296
10 C 0.068 3.932
11 C -0.132 4.132
12 C -0.312 4.312
13 S 0.432 5.568
14 C -0.444 4.444
15 C 0.497 3.503
16 F -0.155 7.155
17 F -0.152 7.152
18 F -0.157 7.157
19 C -0.073 4.073
20 C 0.058 3.942
21 C -0.167 4.167
22 C -0.151 4.151
23 C -0.152 4.152
24 C -0.166 4.166
25 H 0.061 0.939
26 H 0.097 0.903
27 H 0.060 0.940
28 H 0.175 0.825
29 H 0.172 0.828
30 H 0.078 0.922
31 H 0.063 0.937
32 H 0.067 0.933
33 H 0.096 0.904
34 H 0.081 0.919
35 H 0.093 0.907
36 H 0.064 0.936
37 H 0.081 0.919
38 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 4.765 -8.638 -8.298 12.891
hybrid contribution -0.467 0.597 1.215 1.432
sum 4.298 -8.041 -7.083 11.545
Atomic orbital electron populations
1.69984 1.06330 1.25979 1.53454 1.25578 0.95428 1.00382 1.00816
0.85760 0.78554 0.81418 0.77706 1.21026 1.22449 1.20207 1.18917
0.93926 0.85952 1.37919 0.93168 1.44044 1.51340 1.03491 1.30732
1.19638 0.89908 1.02134 0.81493 1.20041 1.02683 0.91284 0.99224
1.25795 1.03379 1.03617 0.98378 1.83793 1.54678 0.94268 1.24043
1.24523 1.16833 0.97876 1.05190 1.17056 0.74280 0.82006 0.76948
1.93224 1.60083 1.94543 1.67622 1.93204 1.95633 1.57172 1.69200
1.93198 1.46476 1.95023 1.81016 1.20077 0.95372 0.99285 0.92576
1.21271 0.93866 0.87279 0.91822 1.22698 0.97577 0.99386 0.97074
1.22403 0.94542 0.99762 0.98374 1.22223 0.97540 1.00427 0.94976
1.22459 0.97358 1.00029 0.96723 0.93895 0.90290 0.93956 0.82508
0.82842 0.92230 0.93696 0.93272 0.90395 0.91895 0.90671 0.93645
0.91928 0.93657
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -49.17 11.43 21.65 0.25 -48.92 16
2 C -0.02 -1.25 4.96 84.86 0.42 -0.83 16
3 Si 0.94 42.13 29.61 68.60 2.03 44.16 16
4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16
5 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16
6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16
7 C -0.24 -11.72 7.75 84.03 0.65 -11.06 16
8 H 0.05 2.59 7.01 -2.91 -0.02 2.57 16
9 N -0.58 -25.63 2.37 -678.30 -1.61 -27.24 16
10 C 0.20 8.36 5.51 85.63 0.47 8.83 16
11 C -0.12 -4.34 5.38 -20.92 -0.11 -4.46 16
12 C -0.17 -6.17 10.98 66.72 0.73 -5.44 16
13 S 0.17 4.82 23.05 -56.49 -1.30 3.52 16
14 C -0.33 -9.62 5.95 24.59 0.15 -9.47 16
15 C 0.55 14.74 3.52 71.24 0.25 14.99 16
16 F -0.17 -4.53 17.30 44.97 0.78 -3.75 16
17 F -0.17 -4.52 16.93 44.97 0.76 -3.76 16
18 F -0.18 -4.63 17.05 44.97 0.77 -3.86 16
19 C -0.04 -1.22 9.50 21.22 0.20 -1.02 16
20 C 0.16 6.23 3.41 45.72 0.16 6.39 16
21 C -0.13 -4.78 6.43 31.70 0.20 -4.57 16
22 C -0.11 -3.32 6.91 31.91 0.22 -3.10 16
23 C -0.11 -3.48 6.83 31.67 0.22 -3.26 16
24 C -0.13 -4.36 6.15 31.32 0.19 -4.17 16
25 H 0.25 13.32 8.32 -92.71 -0.77 12.55 16
26 H 0.08 3.88 5.46 -2.39 -0.01 3.87 16
27 H 0.04 1.70 7.94 -2.39 -0.02 1.68 16
28 H 0.16 5.91 8.06 -2.91 -0.02 5.89 16
29 H 0.15 4.37 7.99 -2.91 -0.02 4.35 16
30 H 0.06 2.10 7.85 -2.39 -0.02 2.09 16
31 H 0.04 2.04 7.17 -2.39 -0.02 2.02 16
32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16
33 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16
34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16
35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16
36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16
37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
38 H 0.04 1.80 6.79 -2.39 -0.02 1.78 16
Total: -1.00 -52.42 337.77 6.51 -45.91
By element:
Atomic # 1 Polarization: 10.02 SS G_CDS: 1.08 Total: 11.10 kcal
Atomic # 6 Polarization: -20.93 SS G_CDS: 3.75 Total: -17.18 kcal
Atomic # 7 Polarization: -74.80 SS G_CDS: -1.36 Total: -76.16 kcal
Atomic # 9 Polarization: -13.67 SS G_CDS: 2.31 Total: -11.36 kcal
Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal
Atomic # 16 Polarization: 4.82 SS G_CDS: -1.30 Total: 3.52 kcal
Total: -52.42 6.51 -45.91 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600122252.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -68.713 kcal
(2) G-P(sol) polarization free energy of solvation -52.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.914 kcal
(6) G-S(sol) free energy of system = (1) + (5) -114.628 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds