Wall clock time and date at job start Tue Mar 31 2020 12:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38080 * 120.02931 * 2 1 4 4 C 1.38491 * 120.05345 * 179.97438 * 3 2 1 5 5 F 1.35105 * 119.94699 * 179.97438 * 4 3 2 6 6 C 1.38540 * 120.10771 * 359.97438 * 4 3 2 7 7 C 1.38048 * 120.04992 * 359.72087 * 6 4 3 8 8 C 1.38936 * 120.02218 * 179.97438 * 2 1 3 9 9 N 1.39836 * 120.05597 * 0.02562 * 8 2 1 10 10 C 1.37121 * 120.00192 * 270.00368 * 9 8 2 11 11 H 1.08004 * 119.99734 * 167.98658 * 10 9 8 12 12 C 1.38877 * 119.99904 * 348.26222 * 10 9 8 13 13 N 1.31427 * 120.00316 * 341.80151 * 12 10 9 14 14 Si 1.86801 * 120.00046 * 161.80458 * 12 10 9 15 15 H 1.48508 * 109.47388 * 89.99802 * 14 12 10 16 16 H 1.48502 * 109.47444 * 209.99766 * 14 12 10 17 17 H 1.48501 * 109.47029 * 329.99885 * 14 12 10 18 18 C 1.34777 * 119.99822 * 90.00041 * 9 8 2 19 19 O 1.21283 * 120.00330 * 354.25266 * 18 9 8 20 20 C 1.50697 * 120.00131 * 174.24958 * 18 9 8 21 21 H 1.09001 * 109.47078 * 322.15787 * 20 18 9 22 22 C 1.52999 * 109.47058 * 82.15732 * 20 18 9 23 23 C 1.53002 * 109.47520 * 202.15925 * 20 18 9 24 24 F 1.39902 * 109.47187 * 59.99469 * 23 20 18 25 25 F 1.39893 * 109.47573 * 179.97438 * 23 20 18 26 26 F 1.39904 * 109.46796 * 299.99824 * 23 20 18 27 27 H 1.08997 * 109.46411 * 270.01997 * 1 2 3 28 28 H 1.08996 * 109.46690 * 30.01533 * 1 2 3 29 29 H 1.09000 * 109.47252 * 150.02079 * 1 2 3 30 30 H 1.08003 * 119.97038 * 359.97438 * 3 2 1 31 31 H 1.08001 * 119.97723 * 180.02562 * 6 4 3 32 32 H 1.07993 * 120.02962 * 180.30095 * 7 6 4 33 33 H 0.97000 * 120.00166 * 185.08148 * 13 12 10 34 34 H 1.09001 * 109.47241 * 294.26547 * 22 20 18 35 35 H 1.08996 * 109.47361 * 54.27320 * 22 20 18 36 36 H 1.09003 * 109.47140 * 174.27066 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1955 0.0000 4 6 3.5830 1.1960 0.0005 5 9 4.2569 2.3670 0.0000 6 6 4.2785 -0.0022 0.0016 7 6 3.5920 -1.1999 0.0080 8 6 2.2022 -1.2030 0.0005 9 7 1.5047 -2.4149 0.0005 10 6 1.1622 -3.0089 1.1880 11 1 0.4635 -3.8324 1.1981 12 6 1.7092 -2.5477 2.3783 13 7 2.7962 -1.8092 2.3594 14 14 0.9000 -2.9770 4.0063 15 1 1.4719 -4.2460 4.5240 16 1 1.1472 -1.8874 4.9845 17 1 -0.5623 -3.1389 3.8047 18 6 1.1690 -2.9992 -1.1667 19 8 1.3785 -2.4254 -2.2145 20 6 0.5335 -4.3656 -1.1700 21 1 0.9870 -4.9791 -0.3915 22 6 -0.9671 -4.2308 -0.9036 23 6 0.7522 -5.0266 -2.5324 24 9 2.1243 -5.1499 -2.7761 25 9 0.1627 -6.2953 -2.5353 26 9 0.1700 -4.2392 -3.5316 27 1 -0.3632 0.0004 1.0277 28 1 -0.3632 0.8898 -0.5141 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6581 2.1308 -0.0004 31 1 5.3585 0.0008 0.0024 32 1 4.1345 -2.1336 0.0137 33 1 3.2201 -1.5487 3.1920 34 1 -1.1243 -3.8545 0.1073 35 1 -1.4026 -3.5361 -1.6217 36 1 -1.4434 -5.2058 -1.0064 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602386355.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:10 Heat of formation + Delta-G solvation = -201.126919 kcal Electronic energy + Delta-G solvation = -28387.725669 eV Core-core repulsion = 23757.789718 eV Total energy + Delta-G solvation = -4629.935951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.61118 -48.18423 -47.15983 -46.98329 -39.83360 -37.60347 -34.91200 -33.33318 -32.12698 -31.62565 -28.82250 -26.37430 -26.03056 -25.12856 -23.29613 -21.64557 -20.82822 -19.50761 -18.41080 -18.16138 -17.83328 -16.48734 -16.26621 -16.19359 -15.87968 -15.08654 -14.87008 -14.63008 -14.17735 -14.02804 -13.72043 -13.55912 -13.48784 -13.24221 -13.19534 -13.11075 -12.95646 -12.73617 -12.63333 -12.51672 -12.20121 -11.90783 -11.58664 -11.46033 -11.32120 -11.24349 -10.96788 -10.83656 -10.60087 -10.56911 -10.37554 -9.63195 -8.86963 -8.22435 -8.07606 -7.64218 -6.40091 -4.23659 2.06999 2.20354 2.90865 3.06384 3.08936 3.12383 3.46098 3.80561 4.12458 4.25112 4.50100 4.57254 4.77844 4.87961 5.03564 5.38297 5.44151 5.55052 5.57859 5.61853 5.86809 5.94538 6.04358 6.13303 6.28652 6.31414 6.33798 6.45890 6.64901 6.86476 6.95368 7.08952 7.14617 7.36444 7.51427 7.72008 8.15409 8.74766 9.06801 9.49672 10.37061 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.012317 B = 0.006262 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.743072 B = 4470.642979 C = 5754.717439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.061 4.061 3 C -0.163 4.163 4 C 0.078 3.922 5 F -0.157 7.157 6 C -0.167 4.167 7 C -0.005 4.005 8 C 0.212 3.788 9 N -0.397 5.397 10 C -0.359 4.359 11 H 0.109 0.891 12 C 0.049 3.951 13 N -0.845 5.845 14 Si 0.919 3.081 15 H -0.275 1.275 16 H -0.280 1.280 17 H -0.267 1.267 18 C 0.467 3.533 19 O -0.576 6.576 20 C -0.142 4.142 21 H 0.132 0.868 22 C -0.146 4.146 23 C 0.469 3.531 24 F -0.182 7.182 25 F -0.191 7.191 26 F -0.171 7.171 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.275 0.725 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 -2.345 -1.251 4.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.063 4.063 3 C -0.183 4.183 4 C 0.059 3.941 5 F -0.135 7.135 6 C -0.186 4.186 7 C -0.025 4.025 8 C 0.122 3.878 9 N -0.113 5.113 10 C -0.484 4.484 11 H 0.127 0.873 12 C -0.159 4.159 13 N -0.480 5.480 14 Si 0.745 3.255 15 H -0.201 1.201 16 H -0.205 1.205 17 H -0.191 1.191 18 C 0.255 3.745 19 O -0.460 6.460 20 C -0.164 4.164 21 H 0.150 0.850 22 C -0.203 4.203 23 C 0.414 3.586 24 F -0.163 7.163 25 F -0.173 7.173 26 F -0.153 7.153 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.542 -1.875 -1.627 4.325 hybrid contribution 0.034 -0.208 1.073 1.094 sum -3.507 -2.083 -0.554 4.117 Atomic orbital electron populations 1.20552 0.91375 1.01766 1.01719 1.19636 0.95944 0.91626 0.99106 1.20490 0.91970 0.98043 1.07769 1.17510 0.90009 0.80647 1.05906 1.91394 1.80731 1.46858 1.94564 1.20650 0.99503 0.91139 1.07345 1.20648 0.93125 0.96624 0.92121 1.16936 0.90125 0.84613 0.96161 1.41090 1.48150 1.16812 1.05238 1.19666 1.27842 1.18867 0.82070 0.87344 1.25252 0.95041 0.95724 0.99887 1.69938 1.15592 1.33899 1.28528 0.86044 0.79918 0.78380 0.81199 1.20079 1.20521 1.19092 1.19236 0.84449 0.86829 0.83948 1.90691 1.59276 1.65146 1.30910 1.22325 1.01610 0.98913 0.93577 0.85036 1.21773 0.90696 1.03065 1.04773 1.20114 0.73902 0.76018 0.88553 1.93168 1.31866 1.95865 1.95397 1.93124 1.84319 1.42796 1.97044 1.93186 1.84040 1.74007 1.64019 0.91518 0.92795 0.91512 0.86198 0.86180 0.86280 0.91332 0.89053 0.91360 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 9.77 36.01 0.35 -1.47 16 2 C -0.06 -1.31 5.90 -104.42 -0.62 -1.93 16 3 C -0.16 -3.26 9.67 -39.55 -0.38 -3.64 16 4 C 0.08 1.58 7.30 -39.38 -0.29 1.30 16 5 F -0.16 -3.00 17.27 2.25 0.04 -2.96 16 6 C -0.17 -3.38 10.02 -39.54 -0.40 -3.78 16 7 C -0.01 -0.12 7.76 -39.38 -0.31 -0.43 16 8 C 0.21 4.83 2.67 -83.67 -0.22 4.61 16 9 N -0.40 -8.87 1.80 -58.97 -0.11 -8.97 16 10 C -0.36 -7.79 8.70 -14.95 -0.13 -7.92 16 11 H 0.11 2.13 5.10 -52.48 -0.27 1.86 16 12 C 0.05 1.09 5.23 -17.49 -0.09 1.00 16 13 N -0.84 -19.73 9.66 55.49 0.54 -19.20 16 14 Si 0.92 17.50 29.59 -169.99 -5.03 12.47 16 15 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 16 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 18 C 0.47 10.15 5.81 -10.99 -0.06 10.09 16 19 O -0.58 -14.17 15.10 5.55 0.08 -14.09 16 20 C -0.14 -2.51 1.85 -91.77 -0.17 -2.68 16 21 H 0.13 2.19 7.10 -51.93 -0.37 1.82 16 22 C -0.15 -2.15 8.71 37.16 0.32 -1.82 16 23 C 0.47 8.35 2.47 37.16 0.09 8.44 16 24 F -0.18 -3.50 16.92 2.25 0.04 -3.46 16 25 F -0.19 -3.00 16.70 2.25 0.04 -2.97 16 26 F -0.17 -3.28 15.57 2.25 0.04 -3.24 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.05 0.87 8.09 -51.93 -0.42 0.45 16 29 H 0.07 1.31 6.90 -51.93 -0.36 0.96 16 30 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 31 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 33 H 0.28 6.27 8.32 -40.82 -0.34 5.93 16 34 H 0.09 1.33 6.57 -51.93 -0.34 0.99 16 35 H 0.07 1.03 7.96 -51.93 -0.41 0.62 16 36 H 0.07 0.84 7.65 -51.93 -0.40 0.45 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -26.03 319.79 -4.84 -30.87 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -3.39 Total: 4.96 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.90 Total: 1.77 kcal Atomic # 7 Polarization: -28.60 SS G_CDS: 0.43 Total: -28.17 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.08 Total: -14.09 kcal Atomic # 9 Polarization: -12.78 SS G_CDS: 0.15 Total: -12.63 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.03 -4.84 -30.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602386355.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.259 kcal (2) G-P(sol) polarization free energy of solvation -26.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds