Wall clock time and date at job start Tue Mar 31 2020 12:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86798 * 120.00061 * 2 1 4 4 H 1.48498 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47316 * 300.00022 * 3 2 1 6 6 H 1.48501 * 109.47353 * 59.99911 * 3 2 1 7 7 C 1.38804 * 120.00136 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00566 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.76199 * 100.00132 * 185.65421 * 9 7 2 11 11 C 1.39112 * 120.18862 * 6.86679 * 10 9 7 12 12 C 1.37915 * 120.05053 * 180.25556 * 11 10 9 13 13 C 1.38655 * 120.43569 * 359.74143 * 12 11 10 14 14 C 1.37814 * 120.38475 * 359.97438 * 13 12 11 15 15 C 1.39683 * 119.93383 * 0.02562 * 14 13 12 16 16 C 1.47425 * 120.21103 * 179.97438 * 15 14 13 17 17 O 1.21612 * 119.99752 * 180.02562 * 16 15 14 18 18 N 1.34777 * 120.00068 * 0.02562 * 16 15 14 19 19 C 1.46508 * 119.99862 * 179.72330 * 18 16 15 20 20 C 1.52957 * 109.41012 * 275.63000 * 19 18 16 21 21 C 1.53227 * 109.40050 * 176.29752 * 20 19 18 22 22 C 1.51270 * 108.54102 * 54.62493 * 21 20 19 23 23 O 1.20761 * 120.85190 * 128.67114 * 22 21 20 24 24 C 1.51264 * 118.29840 * 308.65799 * 22 21 20 25 25 C 1.52955 * 109.41139 * 155.27652 * 19 18 16 26 26 H 0.97003 * 119.99817 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.97997 * 359.97438 * 11 10 9 28 28 H 1.07993 * 119.78245 * 179.76752 * 12 11 10 29 29 H 1.07997 * 119.80820 * 180.02562 * 13 12 11 30 30 H 1.07996 * 120.03388 * 180.02562 * 14 13 12 31 31 H 0.96996 * 120.00284 * 0.02562 * 18 16 15 32 32 H 1.08999 * 109.40844 * 35.41618 * 19 18 16 33 33 H 1.09001 * 109.48231 * 296.27317 * 20 19 18 34 34 H 1.08995 * 109.48483 * 56.31626 * 20 19 18 35 35 H 1.08996 * 109.62926 * 294.90779 * 21 20 19 36 36 H 1.09010 * 109.78455 * 174.43342 * 21 20 19 37 37 H 1.09001 * 109.62216 * 291.62538 * 24 22 21 38 38 H 1.09000 * 109.78285 * 171.15509 * 24 22 21 39 39 H 1.08999 * 109.48091 * 303.68527 * 25 19 18 40 40 H 1.08998 * 109.48476 * 63.71421 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3463 0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8908 2.3965 1.2125 7 6 2.0096 -1.2021 0.0005 8 1 3.0895 -1.2021 0.0010 9 16 1.1286 -2.7281 0.0005 10 6 2.4709 -3.8564 0.1723 11 6 3.7581 -3.3822 0.4040 12 6 4.8075 -4.2677 0.5327 13 6 4.5896 -5.6338 0.4381 14 6 3.3209 -6.1234 0.2146 15 6 2.2465 -5.2407 0.0818 16 6 0.8869 -5.7578 -0.1579 17 8 -0.0457 -4.9858 -0.2734 18 7 0.6774 -7.0860 -0.2490 19 6 -0.6748 -7.6001 -0.4812 20 6 -1.4135 -7.7087 0.8537 21 6 -2.8566 -8.1581 0.6018 22 6 -2.8280 -9.4399 -0.2009 23 8 -3.4500 -10.4102 0.1594 24 6 -2.0007 -9.4750 -1.4668 25 6 -0.5887 -8.9779 -1.1399 26 1 -0.4850 0.8401 -0.0004 27 1 3.9365 -2.3197 0.4787 28 1 5.8056 -3.8947 0.7089 29 1 5.4187 -6.3181 0.5409 30 1 3.1575 -7.1885 0.1423 31 1 1.4211 -7.7018 -0.1566 32 1 -1.2140 -6.9175 -1.1380 33 1 -0.9112 -8.4384 1.4889 34 1 -1.4162 -6.7372 1.3478 35 1 -3.3876 -7.3877 0.0427 36 1 -3.3600 -8.3328 1.5528 37 1 -2.4525 -8.8266 -2.2174 38 1 -1.9509 -10.4954 -1.8467 39 1 -0.0068 -8.9058 -2.0587 40 1 -0.1057 -9.6775 -0.4577 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701212404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:16 Heat of formation + Delta-G solvation = -79.077964 kcal Electronic energy + Delta-G solvation = -23673.056487 eV Core-core repulsion = 20156.482893 eV Total energy + Delta-G solvation = -3516.573595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36208 -40.55386 -39.04100 -37.60569 -34.75213 -34.49298 -32.25030 -32.00811 -31.74375 -28.69079 -27.82156 -24.80026 -24.24391 -23.43145 -22.49765 -21.47697 -20.39654 -19.74592 -18.69424 -17.48743 -17.35318 -17.03862 -16.63076 -16.42264 -16.02897 -15.93088 -15.55639 -15.51278 -15.24663 -14.76865 -14.69834 -14.46172 -14.23576 -13.57443 -13.38064 -13.30149 -13.14144 -12.99995 -12.87332 -12.65165 -12.51645 -12.43314 -12.19053 -12.03568 -11.64092 -11.44720 -11.39853 -11.21109 -10.46149 -10.38316 -10.06494 -9.86440 -9.72804 -8.44579 -8.43238 -6.22262 0.07790 0.57244 0.90896 1.27895 1.35446 1.46112 1.67560 2.07228 2.17993 2.30115 2.89078 3.07639 3.11233 3.26641 3.63728 3.73755 3.96068 4.03364 4.06572 4.12224 4.28479 4.29662 4.37905 4.45739 4.55880 4.65284 4.70176 4.79584 4.89512 4.98995 5.00688 5.02661 5.13396 5.24125 5.29670 5.39215 5.48504 5.59027 5.62760 5.70904 6.12181 6.19018 6.46107 6.70926 6.97519 7.43836 8.61172 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.016456 B = 0.003423 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.065928 B = 8178.633156 C = 9596.243851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.025 3.975 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.602 4.602 8 H 0.093 0.907 9 S 0.068 5.932 10 C -0.073 4.073 11 C -0.177 4.177 12 C -0.072 4.072 13 C -0.159 4.159 14 C -0.052 4.052 15 C -0.182 4.182 16 C 0.549 3.451 17 O -0.552 6.552 18 N -0.709 5.709 19 C 0.140 3.860 20 C -0.120 4.120 21 C -0.166 4.166 22 C 0.370 3.630 23 O -0.498 6.498 24 C -0.160 4.160 25 C -0.108 4.108 26 H 0.275 0.725 27 H 0.116 0.884 28 H 0.146 0.854 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.413 0.587 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.372 -19.458 -1.517 20.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.181 4.181 3 Si 0.813 3.187 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.749 4.749 8 H 0.111 0.889 9 S 0.327 5.673 10 C -0.191 4.191 11 C -0.203 4.203 12 C -0.093 4.093 13 C -0.182 4.182 14 C -0.072 4.072 15 C -0.195 4.195 16 C 0.337 3.663 17 O -0.432 6.432 18 N -0.363 5.363 19 C 0.035 3.965 20 C -0.158 4.158 21 C -0.205 4.205 22 C 0.248 3.752 23 O -0.375 6.375 24 C -0.198 4.198 25 C -0.146 4.146 26 H 0.084 0.916 27 H 0.134 0.866 28 H 0.164 0.836 29 H 0.182 0.818 30 H 0.182 0.818 31 H 0.252 0.748 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.791 -19.247 -1.545 19.510 hybrid contribution 1.570 1.684 0.334 2.327 sum 4.362 -17.563 -1.211 18.137 Atomic orbital electron populations 1.70129 1.07944 1.29046 1.46808 1.26107 0.95838 1.03324 0.92798 0.85020 0.78808 0.76530 0.78374 1.18159 1.19601 1.19572 1.24289 0.97048 0.94602 1.58950 0.88946 1.84857 1.06323 0.95194 1.80918 1.23004 0.99610 0.97526 0.98984 1.21441 0.92438 1.00823 1.05561 1.21524 0.98398 0.94002 0.95343 1.21326 0.97682 0.95005 1.04157 1.21473 0.91327 0.99481 0.94928 1.19535 0.94481 0.91890 1.13625 1.18434 0.88300 0.83035 0.76486 1.90790 1.44795 1.56970 1.50639 1.45632 1.10768 1.05496 1.74359 1.21050 0.82858 0.96339 0.96217 1.21833 0.93934 1.01867 0.98211 1.22264 0.98603 0.97438 1.02162 1.25255 0.76010 0.87389 0.86547 1.90405 1.38662 1.38632 1.69763 1.22260 0.95632 1.05534 0.96367 1.21715 0.96242 0.93753 1.02920 0.91563 0.86630 0.83614 0.81783 0.81805 0.74816 0.90732 0.90003 0.92731 0.87515 0.89295 0.86599 0.87471 0.88045 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.84 13.22 21.65 0.29 -54.55 16 2 C 0.02 1.42 5.49 84.87 0.47 1.89 16 3 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 4 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.60 -34.83 9.00 67.96 0.61 -34.22 16 8 H 0.09 5.07 4.98 -2.91 -0.01 5.06 16 9 S 0.07 3.86 18.56 -56.49 -1.05 2.81 16 10 C -0.07 -3.32 6.14 23.04 0.14 -3.18 16 11 C -0.18 -7.22 9.22 22.40 0.21 -7.01 16 12 C -0.07 -2.09 10.03 22.29 0.22 -1.87 16 13 C -0.16 -3.64 10.02 22.27 0.22 -3.42 16 14 C -0.05 -1.28 9.53 22.52 0.21 -1.06 16 15 C -0.18 -6.56 5.89 -19.95 -0.12 -6.68 16 16 C 0.55 19.41 7.70 86.66 0.67 20.08 16 17 O -0.55 -25.33 13.44 -4.07 -0.05 -25.38 16 18 N -0.71 -15.82 5.03 -445.92 -2.24 -18.07 16 19 C 0.14 2.73 2.35 44.96 0.11 2.84 16 20 C -0.12 -2.44 5.50 30.66 0.17 -2.27 16 21 C -0.17 -3.10 6.17 30.10 0.19 -2.92 16 22 C 0.37 6.81 6.72 29.46 0.20 7.01 16 23 O -0.50 -12.82 17.89 -1.45 -0.03 -12.84 16 24 C -0.16 -1.91 6.17 30.10 0.19 -1.73 16 25 C -0.11 -1.20 5.40 30.65 0.17 -1.04 16 26 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.12 5.16 5.04 -2.91 -0.01 5.15 16 28 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 29 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 30 H 0.16 2.26 6.40 -2.91 -0.02 2.24 16 31 H 0.41 5.92 6.63 -92.71 -0.61 5.31 16 32 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -80.76 344.53 3.06 -77.70 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.47 Total: 18.22 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 3.65 Total: -33.58 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.95 Total: -72.62 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.08 Total: -38.22 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.05 Total: 2.81 kcal Total: -80.76 3.06 -77.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701212404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.378 kcal (2) G-P(sol) polarization free energy of solvation -80.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds