Wall clock time and date at job start Tue Mar 31 2020 12:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53043 * 109.45867 * 229.21077 * 3 2 1 5 5 C 1.53192 * 109.31188 * 181.38747 * 4 3 2 6 6 N 1.46932 * 108.77485 * 305.36356 * 5 4 3 7 7 S 1.65593 * 120.62932 * 233.58801 * 6 5 4 8 8 O 1.42094 * 106.40357 * 336.45869 * 7 6 5 9 9 O 1.42101 * 106.40030 * 203.53911 * 7 6 5 10 10 C 1.76203 * 107.21805 * 89.99805 * 7 6 5 11 11 C 1.38642 * 119.74766 * 90.00413 * 10 7 6 12 12 C 1.37614 * 120.24874 * 180.02562 * 11 10 7 13 13 C 1.40719 * 119.74423 * 359.97438 * 12 11 10 14 14 C 1.41395 * 120.24714 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99748 * 335.60207 * 14 13 12 16 16 C 1.39938 * 120.00091 * 155.87285 * 14 13 12 17 17 N 1.30819 * 120.00176 * 342.02811 * 16 14 13 18 18 Si 1.86802 * 120.00037 * 162.02561 * 16 14 13 19 19 H 1.48500 * 109.47127 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47287 * 120.00096 * 18 16 14 21 21 H 1.48498 * 109.47059 * 240.00299 * 18 16 14 22 22 C 1.40718 * 119.51234 * 0.28541 * 13 12 11 23 23 C 1.37623 * 119.74436 * 359.46344 * 22 13 12 24 24 C 1.46925 * 118.73462 * 53.85989 * 6 5 4 25 25 C 1.53039 * 109.45859 * 349.27828 * 3 2 1 26 26 H 4.44651 * 5.63570 * 179.97438 * 4 1 2 27 27 H 1.08997 * 109.44563 * 109.24185 * 3 2 1 28 28 H 1.08995 * 109.49863 * 61.43360 * 4 3 2 29 29 H 1.09001 * 109.51820 * 301.35227 * 4 3 2 30 30 H 1.08989 * 109.58441 * 185.57861 * 5 4 3 31 31 H 1.09002 * 109.70539 * 65.21748 * 5 4 3 32 32 H 1.08003 * 119.87748 * 0.02562 * 11 10 7 33 33 H 1.07997 * 120.13310 * 179.97438 * 12 11 10 34 34 H 0.97005 * 120.00336 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.12906 * 179.69972 * 22 13 12 36 36 H 1.07998 * 119.87902 * 180.28054 * 23 22 13 37 37 H 1.08998 * 109.58638 * 65.93223 * 24 6 5 38 38 H 1.09001 * 109.58357 * 186.35345 * 24 6 5 39 39 H 1.09004 * 109.49709 * 298.56688 * 25 3 2 40 40 H 1.08993 * 109.49965 * 58.66513 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 0.9436 1.0925 5 6 4.6869 0.9683 1.0668 6 7 5.1841 -0.4098 1.1791 7 16 6.2829 -0.8176 2.3488 8 8 6.9561 0.3826 2.7029 9 8 6.9569 -1.9772 1.8794 10 6 5.3700 -1.3143 3.7716 11 6 5.0139 -2.6448 3.9306 12 6 4.3005 -3.0440 5.0376 13 6 3.9328 -2.0960 6.0104 14 6 3.2002 -2.4946 7.1522 15 1 2.5902 -3.3852 7.1186 16 6 3.2609 -1.7320 8.3239 17 7 4.2340 -0.8749 8.4968 18 14 1.9525 -1.9377 9.6411 19 1 0.9697 -2.9627 9.2068 20 1 2.5911 -2.3711 10.9098 21 1 1.2568 -0.6432 9.8542 22 6 4.2948 -0.7475 5.8358 23 6 5.0129 -0.3718 4.7235 24 6 4.6922 -1.4177 0.2299 25 6 3.1565 -1.4169 0.2685 26 1 -1.0501 0.0000 -0.0003 27 1 3.0087 0.3395 -0.9704 28 1 2.8135 0.5912 2.0657 29 1 2.7723 1.9483 0.9142 30 1 5.0569 1.5595 1.9043 31 1 5.0318 1.4059 0.1299 32 1 5.2976 -3.3707 3.1829 33 1 4.0238 -4.0808 5.1593 34 1 4.2760 -0.3459 9.3088 35 1 4.0136 -0.0108 6.5738 36 1 5.2958 0.6618 4.5896 37 1 5.0354 -1.1715 -0.7750 38 1 5.0658 -2.4012 0.5150 39 1 2.8145 -1.7470 1.2494 40 1 2.7742 -2.0923 -0.4969 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709587046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:31 Heat of formation + Delta-G solvation = -33.998948 kcal Electronic energy + Delta-G solvation = -24663.908195 eV Core-core repulsion = 21149.289373 eV Total energy + Delta-G solvation = -3514.618822 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.65998 -39.37254 -38.20886 -36.78776 -35.81184 -35.14540 -32.07920 -32.02952 -31.85500 -31.29358 -27.62579 -25.87099 -24.31893 -23.30010 -22.96196 -21.71937 -19.89811 -19.45048 -19.15958 -18.57651 -18.06121 -17.24067 -16.89015 -15.87349 -15.68384 -15.66803 -15.37593 -15.15941 -15.06466 -14.84481 -14.70853 -14.12269 -13.99217 -13.57495 -13.54766 -13.24579 -13.08694 -12.97748 -12.88201 -12.86123 -12.59231 -12.53373 -12.16662 -12.12171 -12.01826 -11.81660 -11.55692 -11.33111 -11.21517 -10.91333 -10.89266 -9.96366 -9.74393 -9.55385 -8.88123 -6.65685 -0.34129 0.48705 1.04748 1.34215 1.40178 1.51567 1.92876 1.96921 2.09862 2.17319 2.52375 2.94219 3.43498 3.48543 3.52222 3.77687 4.01309 4.15976 4.20351 4.28703 4.31255 4.36420 4.45514 4.63734 4.81603 4.82841 4.84416 4.85653 4.91257 4.99745 5.10767 5.19804 5.23644 5.26425 5.28402 5.44743 5.51269 5.58658 5.70767 5.80483 5.92974 6.14906 6.48423 6.67647 6.76519 6.80496 8.07426 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.012998 B = 0.004493 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.660737 B = 6229.742154 C = 7433.493883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.207 4.207 3 C 0.026 3.974 4 C -0.124 4.124 5 C 0.119 3.881 6 N -0.998 5.998 7 S 2.719 3.281 8 O -1.001 7.001 9 O -0.997 6.997 10 C -0.795 4.795 11 C -0.001 4.001 12 C -0.257 4.257 13 C 0.111 3.889 14 C -0.468 4.468 15 H 0.091 0.909 16 C 0.034 3.966 17 N -0.800 5.800 18 Si 0.992 3.008 19 H -0.253 1.253 20 H -0.262 1.262 21 H -0.261 1.261 22 C -0.208 4.208 23 C -0.019 4.019 24 C 0.119 3.881 25 C -0.123 4.123 26 H 0.240 0.760 27 H 0.117 0.883 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.298 0.702 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 3.096 -13.397 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.207 4.207 3 C 0.008 3.992 4 C -0.163 4.163 5 C -0.005 4.005 6 N -0.836 5.836 7 S 2.815 3.185 8 O -0.991 6.991 9 O -0.988 6.988 10 C -0.888 4.888 11 C -0.021 4.021 12 C -0.278 4.278 13 C 0.108 3.892 14 C -0.495 4.495 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.423 5.423 18 Si 0.811 3.189 19 H -0.176 1.176 20 H -0.187 1.187 21 H -0.185 1.185 22 C -0.228 4.228 23 C -0.039 4.039 24 C -0.006 4.006 25 C -0.162 4.162 26 H 0.257 0.743 27 H 0.135 0.865 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.956 3.306 -13.351 14.620 hybrid contribution -1.150 -0.247 1.544 1.941 sum -6.106 3.059 -11.807 13.640 Atomic orbital electron populations 1.25650 0.96875 0.99991 1.00544 1.23546 0.95124 1.01128 1.00857 1.18295 0.83885 0.96196 1.00790 1.21914 0.95246 1.00595 0.98503 1.21597 0.93679 0.80791 1.04467 1.57692 1.62801 1.17128 1.46009 1.00568 0.73385 0.71875 0.72653 1.93446 1.72767 1.48360 1.84545 1.93445 1.72626 1.51381 1.81304 1.29784 1.33783 1.02195 1.23017 1.20430 0.92253 0.93407 0.95997 1.21251 1.08959 0.98451 0.99093 1.18200 0.87261 0.91887 0.91880 1.20232 1.23657 1.09692 0.95871 0.89108 1.27027 0.97170 0.92399 1.01897 1.69867 1.27314 1.17638 1.27481 0.85010 0.77686 0.79895 0.76344 1.17613 1.18673 1.18508 1.21346 1.06243 0.96431 0.98764 1.20423 0.93505 0.97137 0.92867 1.21723 0.93654 0.91236 0.93967 1.21993 0.95223 0.96296 1.02703 0.74317 0.86520 0.93277 0.88804 0.89957 0.87777 0.85728 0.87197 0.89082 0.87293 0.86899 0.87771 0.89526 0.93113 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.36 19.25 74.32 1.43 -2.93 16 2 C -0.21 -4.68 12.56 31.13 0.39 -4.29 16 3 C 0.03 0.53 2.52 -12.57 -0.03 0.50 16 4 C -0.12 -2.75 5.32 30.67 0.16 -2.59 16 5 C 0.12 2.77 6.37 86.36 0.55 3.32 16 6 N -1.00 -27.76 3.28 -512.28 -1.68 -29.44 16 7 S 2.72 102.24 5.69 -56.49 -0.32 101.92 16 8 O -1.00 -41.82 15.97 -128.00 -2.04 -43.86 16 9 O -1.00 -40.42 15.97 -128.00 -2.04 -42.47 16 10 C -0.80 -35.13 6.00 22.46 0.13 -35.00 16 11 C 0.00 -0.05 9.49 22.22 0.21 0.16 16 12 C -0.26 -12.47 9.80 22.73 0.22 -12.25 16 13 C 0.11 5.85 5.57 -21.29 -0.12 5.74 16 14 C -0.47 -23.73 9.05 23.46 0.21 -23.52 16 15 H 0.09 4.36 7.91 -2.91 -0.02 4.33 16 16 C 0.03 1.61 5.14 85.26 0.44 2.05 16 17 N -0.80 -39.61 10.96 21.82 0.24 -39.37 16 18 Si 0.99 35.04 29.59 68.60 2.03 37.07 16 19 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 21 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 22 C -0.21 -10.82 8.70 22.73 0.20 -10.63 16 23 C -0.02 -0.92 9.49 22.22 0.21 -0.71 16 24 C 0.12 2.65 6.41 86.51 0.55 3.20 16 25 C -0.12 -2.65 5.33 30.82 0.16 -2.48 16 26 H 0.24 3.13 7.80 -4.41 -0.03 3.10 16 27 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.08 2.12 7.13 -2.39 -0.02 2.10 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.12 4.90 7.60 -2.91 -0.02 4.88 16 33 H 0.11 4.91 8.06 -2.91 -0.02 4.88 16 34 H 0.30 13.08 8.30 -92.70 -0.77 12.31 16 35 H 0.11 5.82 6.16 -2.91 -0.02 5.80 16 36 H 0.11 4.95 7.60 -2.91 -0.02 4.93 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 2.08 7.12 -2.39 -0.02 2.06 16 39 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -66.30 348.44 1.95 -64.35 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 1.04 Total: 31.25 kcal Atomic # 6 Polarization: -84.17 SS G_CDS: 4.73 Total: -79.44 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: -1.44 Total: -68.81 kcal Atomic # 8 Polarization: -82.24 SS G_CDS: -4.09 Total: -86.33 kcal Atomic # 14 Polarization: 35.04 SS G_CDS: 2.03 Total: 37.07 kcal Atomic # 16 Polarization: 102.24 SS G_CDS: -0.32 Total: 101.92 kcal Total: -66.30 1.95 -64.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709587046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.354 kcal (2) G-P(sol) polarization free energy of solvation -66.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds