Wall clock time and date at job start Tue Mar 31 2020 12:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34760 * 125.64634 * 2 1 4 4 C 1.40867 * 107.05899 * 179.97438 * 3 2 1 5 5 C 1.36146 * 106.72859 * 0.02562 * 4 3 2 6 6 C 1.47330 * 125.95222 * 180.02562 * 5 4 3 7 7 C 1.36987 * 126.63345 * 180.02562 * 6 5 4 8 8 C 1.41149 * 105.42150 * 179.97438 * 7 6 5 9 9 C 1.47648 * 126.30525 * 180.02562 * 8 7 6 10 10 O 1.21603 * 120.00129 * 354.00670 * 9 8 7 11 11 N 1.34777 * 119.99677 * 174.01017 * 9 8 7 12 12 C 1.36921 * 119.99792 * 183.92888 * 11 9 8 13 13 H 1.07997 * 119.99909 * 21.97191 * 12 11 9 14 14 C 1.39011 * 119.99896 * 201.97041 * 12 11 9 15 15 N 1.31385 * 120.00124 * 10.20196 * 14 12 11 16 16 Si 1.86804 * 119.99893 * 190.20014 * 14 12 11 17 17 H 1.48497 * 109.47197 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47269 * 120.00165 * 16 14 12 19 19 H 1.48499 * 109.47158 * 240.00059 * 16 14 12 20 20 C 1.46501 * 120.00455 * 3.92647 * 11 9 8 21 21 C 1.50707 * 109.46745 * 83.54628 * 20 11 9 22 22 O 1.20821 * 120.00051 * 0.02562 * 21 20 11 23 23 O 1.34229 * 119.99853 * 179.97438 * 21 20 11 24 24 N 1.31907 * 107.38455 * 359.74599 * 8 7 6 25 25 N 1.28443 * 110.49739 * 0.43724 * 24 8 7 26 26 H 0.97003 * 125.01896 * 179.82073 * 25 24 8 27 27 O 1.34323 * 125.64552 * 180.30649 * 2 1 3 28 28 H 1.09002 * 109.47114 * 89.99886 * 1 2 3 29 29 H 1.09001 * 109.46980 * 210.00048 * 1 2 3 30 30 H 1.08997 * 109.47280 * 329.99520 * 1 2 3 31 31 H 1.08000 * 126.47074 * 359.96580 * 3 2 1 32 32 H 1.08004 * 126.63408 * 180.02562 * 4 3 2 33 33 H 1.07998 * 127.28706 * 359.97393 * 7 6 5 34 34 H 0.97000 * 119.99845 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47031 * 203.54688 * 20 11 9 36 36 H 1.08990 * 109.46969 * 323.55107 * 20 11 9 37 37 H 0.96701 * 116.99628 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2924 1.0951 0.0000 4 6 3.6276 0.6461 0.0006 5 6 3.5834 -0.7147 0.0004 6 6 4.7474 -1.6179 0.0013 7 6 4.7193 -2.9875 0.0006 8 6 6.0719 -3.3907 0.0015 9 6 6.5698 -4.7807 0.0006 10 8 5.7887 -5.7064 0.1090 11 7 7.8900 -5.0235 -0.1202 12 6 8.3443 -6.3125 -0.2020 13 1 7.6788 -7.1003 -0.5228 14 6 9.6621 -6.6073 0.1280 15 7 10.4138 -5.6978 0.7058 16 14 10.3642 -8.2965 -0.2503 17 1 9.3214 -9.1325 -0.8973 18 1 11.5253 -8.1564 -1.1654 19 1 10.8041 -8.9437 1.0118 20 6 8.8390 -3.9083 -0.1642 21 6 9.1635 -3.4693 1.2406 22 8 8.6547 -4.0307 2.1817 23 8 10.0186 -2.4552 1.4461 24 7 6.8092 -2.2969 -0.0030 25 7 6.0630 -1.2515 0.0027 26 1 6.3863 -0.3369 0.0034 27 8 2.2899 -1.0915 -0.0058 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.9608 2.1229 -0.0005 32 1 4.5147 1.2622 0.0012 33 1 3.8467 -3.6239 -0.0004 34 1 11.3333 -5.9036 0.9364 35 1 9.7526 -4.2282 -0.6651 36 1 8.3966 -3.0762 -0.7117 37 1 10.1953 -2.2094 2.3645 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738486992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:47 Heat of formation + Delta-G solvation = -10.791460 kcal Electronic energy + Delta-G solvation = -26527.789269 eV Core-core repulsion = 22467.883585 eV Total energy + Delta-G solvation = -4059.905684 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.84276 -42.06350 -39.15425 -37.85944 -35.13832 -34.39354 -33.46350 -32.96609 -31.90176 -31.25781 -30.32106 -27.59732 -26.32923 -25.36708 -23.01558 -21.91860 -21.82578 -20.89690 -20.35007 -19.00927 -18.24207 -17.07531 -16.87727 -16.54481 -16.48593 -15.65617 -15.55226 -15.04464 -14.76196 -14.39234 -14.25218 -13.94474 -13.63549 -13.37590 -13.30749 -13.10336 -13.07336 -12.77991 -12.49445 -12.03660 -11.80694 -11.77198 -11.44342 -11.01733 -10.54606 -10.37088 -10.32426 -10.29104 -10.04495 -9.64762 -9.52478 -9.04010 -8.95187 -8.75610 -7.93850 -7.86501 -6.44888 -3.95336 0.98002 2.06922 2.26153 2.29240 2.89779 3.18279 3.23870 3.28120 3.32445 3.73175 3.94122 4.18062 4.28830 4.47608 4.58363 4.73050 4.76869 4.94505 5.06493 5.16028 5.17691 5.34430 5.40790 5.56249 5.68282 5.77961 5.96868 6.03428 6.28276 6.30781 6.60737 6.69837 6.75884 6.90051 7.13748 7.49026 7.66524 7.97980 8.14091 8.38522 9.04784 9.17534 9.32205 9.82929 10.61860 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.003363 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.531109 B = 8324.700148 C = 9168.943420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.008 4.008 3 C -0.207 4.207 4 C -0.200 4.200 5 C 0.069 3.931 6 C 0.062 3.938 7 C -0.146 4.146 8 C 0.028 3.972 9 C 0.528 3.472 10 O -0.568 6.568 11 N -0.410 5.410 12 C -0.297 4.297 13 H 0.110 0.890 14 C 0.030 3.970 15 N -0.882 5.882 16 Si 0.939 3.061 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.281 1.281 20 C 0.141 3.859 21 C 0.508 3.492 22 O -0.515 6.515 23 O -0.534 6.534 24 N -0.253 5.253 25 N -0.379 5.379 26 H 0.442 0.558 27 O -0.158 6.158 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.165 0.835 34 H 0.272 0.728 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 16.095 -2.999 19.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.059 4.059 3 C -0.226 4.226 4 C -0.220 4.220 5 C 0.017 3.983 6 C -0.062 4.062 7 C -0.174 4.174 8 C -0.132 4.132 9 C 0.315 3.685 10 O -0.450 6.450 11 N -0.128 5.128 12 C -0.425 4.425 13 H 0.127 0.873 14 C -0.173 4.173 15 N -0.522 5.522 16 Si 0.765 3.235 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.207 1.207 20 C 0.014 3.986 21 C 0.349 3.651 22 O -0.401 6.401 23 O -0.345 6.345 24 N -0.089 5.089 25 N -0.095 5.095 26 H 0.286 0.714 27 O -0.053 6.053 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.182 0.818 34 H 0.083 0.917 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -9.535 15.322 -3.044 18.301 hybrid contribution 0.240 0.001 0.784 0.820 sum -9.295 15.322 -2.260 18.063 Atomic orbital electron populations 1.20337 0.84775 1.04243 1.03682 1.22581 0.94078 0.83817 1.05460 1.21420 0.92278 0.99445 1.09428 1.21691 0.98622 0.92793 1.08911 1.18850 0.81272 0.91109 1.07088 1.18178 0.83459 0.92265 1.12341 1.21821 0.97926 0.91754 1.05928 1.22462 0.91464 0.93647 1.05632 1.16697 0.83369 0.84537 0.83903 1.90637 1.55540 1.43388 1.55403 1.43247 1.03112 1.06144 1.60297 1.19854 0.95779 0.84573 1.42249 0.87284 1.25391 0.96754 0.99946 0.95201 1.69682 1.09065 1.34758 1.38657 0.85659 0.78708 0.81001 0.78126 1.18983 1.20517 1.20682 1.20956 0.96825 0.89922 0.90862 1.23497 0.73752 0.74438 0.93375 1.90586 1.51725 1.53174 1.44644 1.84517 1.62873 1.52012 1.35058 1.73865 1.21432 0.93354 1.20220 1.43507 1.01914 1.08980 1.55057 0.71357 1.84046 1.15204 1.34774 1.71314 0.89911 0.90269 0.89230 0.83125 0.83342 0.81754 0.91701 0.85628 0.88190 0.75712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.46 10.41 36.01 0.37 -0.09 16 2 C -0.01 -0.09 7.31 -35.54 -0.26 -0.35 16 3 C -0.21 -2.00 10.78 -39.82 -0.43 -2.43 16 4 C -0.20 -2.17 10.84 -39.34 -0.43 -2.59 16 5 C 0.07 0.94 7.17 -36.64 -0.26 0.67 16 6 C 0.06 0.97 7.10 -82.51 -0.59 0.38 16 7 C -0.15 -2.77 10.77 -38.93 -0.42 -3.19 16 8 C 0.03 0.60 6.79 -82.89 -0.56 0.04 16 9 C 0.53 13.96 7.39 -12.42 -0.09 13.87 16 10 O -0.57 -16.49 16.63 5.28 0.09 -16.41 16 11 N -0.41 -10.94 2.18 -117.24 -0.26 -11.19 16 12 C -0.30 -8.29 9.28 -14.99 -0.14 -8.43 16 13 H 0.11 3.12 7.43 -52.49 -0.39 2.73 16 14 C 0.03 0.79 5.11 -17.46 -0.09 0.70 16 15 N -0.88 -23.45 8.85 55.50 0.49 -22.95 16 16 Si 0.94 20.68 29.57 -169.99 -5.03 15.66 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 20 C 0.14 3.31 4.79 -5.19 -0.02 3.29 16 21 C 0.51 12.12 5.53 36.01 0.20 12.32 16 22 O -0.52 -14.36 16.74 -18.75 -0.31 -14.68 16 23 O -0.53 -10.36 13.42 -39.25 -0.53 -10.89 16 24 N -0.25 -4.77 8.01 33.35 0.27 -4.50 16 25 N -0.38 -5.55 6.90 33.25 0.23 -5.32 16 26 H 0.44 4.52 8.96 -190.45 -1.71 2.81 16 27 O -0.16 -2.16 10.68 4.45 0.05 -2.11 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 33 H 0.16 3.00 8.06 -52.49 -0.42 2.58 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.13 3.02 6.37 -51.93 -0.33 2.69 16 36 H 0.10 2.10 5.33 -51.93 -0.28 1.82 16 37 H 0.39 5.91 9.10 45.56 0.41 6.32 16 LS Contribution 331.66 15.07 5.00 5.00 Total: -1.00 -36.42 331.66 -6.68 -43.10 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -3.96 Total: 10.10 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: -2.72 Total: 14.20 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.73 Total: -43.97 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -0.71 Total: -44.08 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.42 -6.68 -43.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738486992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.304 kcal (2) G-P(sol) polarization free energy of solvation -36.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds