Wall clock time and date at job start Tue Mar 31 2020 12:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34760 * 125.64634 * 2 1 4 4 C 1.40867 * 107.05899 * 179.97438 * 3 2 1 5 5 C 1.36146 * 106.72859 * 0.02562 * 4 3 2 6 6 C 1.47330 * 125.95222 * 180.02562 * 5 4 3 7 7 C 1.36987 * 126.63345 * 180.02562 * 6 5 4 8 8 C 1.41149 * 105.42150 * 179.97438 * 7 6 5 9 9 C 1.47648 * 126.30525 * 180.02562 * 8 7 6 10 10 O 1.21603 * 120.00129 * 354.00670 * 9 8 7 11 11 N 1.34777 * 119.99677 * 174.01017 * 9 8 7 12 12 C 1.36921 * 119.99792 * 183.92888 * 11 9 8 13 13 H 1.07997 * 119.99909 * 21.97191 * 12 11 9 14 14 C 1.39011 * 119.99896 * 201.97041 * 12 11 9 15 15 N 1.31385 * 120.00124 * 10.20196 * 14 12 11 16 16 Si 1.86804 * 119.99893 * 190.20014 * 14 12 11 17 17 H 1.48497 * 109.47197 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47269 * 120.00165 * 16 14 12 19 19 H 1.48499 * 109.47158 * 240.00059 * 16 14 12 20 20 C 1.46501 * 120.00455 * 3.92647 * 11 9 8 21 21 C 1.50707 * 109.46745 * 83.54628 * 20 11 9 22 22 O 1.20821 * 120.00051 * 0.02562 * 21 20 11 23 23 O 1.34229 * 119.99853 * 179.97438 * 21 20 11 24 24 N 1.31907 * 107.38455 * 359.74599 * 8 7 6 25 25 N 1.28443 * 110.49739 * 0.43724 * 24 8 7 26 26 H 0.97003 * 125.01896 * 179.82073 * 25 24 8 27 27 O 1.34323 * 125.64552 * 180.30649 * 2 1 3 28 28 H 1.09002 * 109.47114 * 89.99886 * 1 2 3 29 29 H 1.09001 * 109.46980 * 210.00048 * 1 2 3 30 30 H 1.08997 * 109.47280 * 329.99520 * 1 2 3 31 31 H 1.08000 * 126.47074 * 359.96580 * 3 2 1 32 32 H 1.08004 * 126.63408 * 180.02562 * 4 3 2 33 33 H 1.07998 * 127.28706 * 359.97393 * 7 6 5 34 34 H 0.97000 * 119.99845 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47031 * 203.54688 * 20 11 9 36 36 H 1.08990 * 109.46969 * 323.55107 * 20 11 9 37 37 H 0.96701 * 116.99628 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2924 1.0951 0.0000 4 6 3.6276 0.6461 0.0006 5 6 3.5834 -0.7147 0.0004 6 6 4.7474 -1.6179 0.0013 7 6 4.7193 -2.9875 0.0006 8 6 6.0719 -3.3907 0.0015 9 6 6.5698 -4.7807 0.0006 10 8 5.7887 -5.7064 0.1090 11 7 7.8900 -5.0235 -0.1202 12 6 8.3443 -6.3125 -0.2020 13 1 7.6788 -7.1003 -0.5228 14 6 9.6621 -6.6073 0.1280 15 7 10.4138 -5.6978 0.7058 16 14 10.3642 -8.2965 -0.2503 17 1 9.3214 -9.1325 -0.8973 18 1 11.5253 -8.1564 -1.1654 19 1 10.8041 -8.9437 1.0118 20 6 8.8390 -3.9083 -0.1642 21 6 9.1635 -3.4693 1.2406 22 8 8.6547 -4.0307 2.1817 23 8 10.0186 -2.4552 1.4461 24 7 6.8092 -2.2969 -0.0030 25 7 6.0630 -1.2515 0.0027 26 1 6.3863 -0.3369 0.0034 27 8 2.2899 -1.0915 -0.0058 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.9608 2.1229 -0.0005 32 1 4.5147 1.2622 0.0012 33 1 3.8467 -3.6239 -0.0004 34 1 11.3333 -5.9036 0.9364 35 1 9.7526 -4.2282 -0.6651 36 1 8.3966 -3.0762 -0.7117 37 1 10.1953 -2.2094 2.3645 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738486992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:46 Heat of formation + Delta-G solvation = -37.424740 kcal Electronic energy + Delta-G solvation = -26528.944175 eV Core-core repulsion = 22467.883585 eV Total energy + Delta-G solvation = -4061.060590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.91472 -43.30138 -41.04897 -39.80186 -37.04864 -36.34582 -34.38891 -34.11604 -33.59204 -32.79469 -31.39492 -29.50333 -27.46461 -27.07985 -24.65103 -23.09399 -22.92692 -22.66787 -21.34619 -20.56935 -19.59954 -19.04442 -18.68001 -18.22475 -17.53315 -17.33035 -16.83393 -16.60528 -16.41091 -16.15765 -15.86730 -15.39405 -15.05291 -14.94274 -14.63015 -13.99069 -13.86198 -13.77257 -13.68580 -13.62646 -13.56560 -13.29053 -12.76673 -12.69900 -12.55094 -12.15495 -12.10318 -11.76847 -11.51969 -11.29529 -10.98401 -10.83292 -10.66153 -10.47459 -9.89179 -8.95333 -8.45834 -6.06074 -0.09359 0.57011 1.23209 1.25582 1.41984 1.44242 1.58014 1.79246 1.87217 2.09499 2.27871 2.34867 2.60330 2.88028 3.14262 3.36194 3.40607 3.82140 3.96830 4.06989 4.26632 4.43563 4.56806 4.61629 4.74192 4.77672 4.80536 4.82352 4.96243 4.98666 5.14067 5.17978 5.38560 5.55939 5.83331 5.97853 6.00671 6.10499 6.33994 6.72699 7.00677 7.20886 7.49576 7.81933 8.59568 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.024938 B = 0.003363 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.531109 B = 8324.700148 C = 9168.943420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.007 4.007 3 C -0.213 4.213 4 C -0.169 4.169 5 C 0.017 3.983 6 C 0.100 3.900 7 C -0.179 4.179 8 C -0.003 4.003 9 C 0.515 3.485 10 O -0.614 6.614 11 N -0.422 5.422 12 C -0.339 4.339 13 H 0.086 0.914 14 C -0.001 4.001 15 N -0.894 5.894 16 Si 1.006 2.994 17 H -0.269 1.269 18 H -0.257 1.257 19 H -0.282 1.282 20 C 0.143 3.857 21 C 0.518 3.482 22 O -0.561 6.561 23 O -0.516 6.516 24 N -0.256 5.256 25 N -0.349 5.349 26 H 0.465 0.535 27 O -0.186 6.186 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.117 0.883 31 H 0.185 0.815 32 H 0.180 0.820 33 H 0.157 0.843 34 H 0.278 0.722 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.218 19.526 -3.260 22.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.232 4.232 4 C -0.189 4.189 5 C -0.034 4.034 6 C -0.026 4.026 7 C -0.207 4.207 8 C -0.161 4.161 9 C 0.304 3.696 10 O -0.499 6.499 11 N -0.139 5.139 12 C -0.466 4.466 13 H 0.104 0.896 14 C -0.203 4.203 15 N -0.533 5.533 16 Si 0.828 3.172 17 H -0.193 1.193 18 H -0.182 1.182 19 H -0.207 1.207 20 C 0.018 3.982 21 C 0.361 3.639 22 O -0.451 6.451 23 O -0.328 6.328 24 N -0.094 5.094 25 N -0.068 5.068 26 H 0.314 0.686 27 O -0.082 6.082 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.135 0.865 31 H 0.202 0.798 32 H 0.197 0.803 33 H 0.175 0.825 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -9.581 18.830 -3.311 21.386 hybrid contribution 0.125 -0.768 0.899 1.189 sum -9.456 18.062 -2.412 20.530 Atomic orbital electron populations 1.20589 0.82132 1.05526 1.05008 1.23540 0.95692 0.83395 1.03151 1.21878 0.91454 1.00826 1.09002 1.22198 1.00484 0.91589 1.04659 1.18717 0.80854 0.91693 1.12139 1.18202 0.84435 0.91298 1.08685 1.21788 0.96688 0.93535 1.08731 1.21829 0.92864 0.92339 1.09095 1.17327 0.83154 0.86204 0.82912 1.90564 1.56580 1.45443 1.57311 1.43407 1.03761 1.06532 1.60209 1.19865 0.96595 0.85273 1.44890 0.89578 1.26221 0.96214 1.03692 0.94176 1.69753 1.09305 1.36145 1.38116 0.84700 0.78228 0.76247 0.78022 1.19313 1.18183 1.20747 1.21029 0.96114 0.89835 0.91271 1.23405 0.73329 0.74379 0.92768 1.90573 1.53605 1.55038 1.45894 1.84434 1.61170 1.50148 1.37027 1.73641 1.21724 0.93439 1.20553 1.43449 1.01456 1.09228 1.52634 0.68561 1.84035 1.15596 1.36627 1.71971 0.88429 0.90445 0.86481 0.79777 0.80287 0.82544 0.91193 0.86293 0.85791 0.73149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.41 71.24 0.74 0.01 16 2 C -0.01 -0.13 7.31 24.89 0.18 0.06 16 3 C -0.21 -3.24 10.78 22.11 0.24 -3.00 16 4 C -0.17 -3.02 10.84 22.43 0.24 -2.78 16 5 C 0.02 0.43 7.17 24.18 0.17 0.61 16 6 C 0.10 3.07 7.10 40.51 0.29 3.36 16 7 C -0.18 -7.12 10.77 22.69 0.24 -6.87 16 8 C 0.00 -0.15 6.79 42.33 0.29 0.13 16 9 C 0.51 29.01 7.39 86.73 0.64 29.65 16 10 O -0.61 -38.48 16.63 -4.04 -0.07 -38.55 16 11 N -0.42 -23.61 2.18 -643.08 -1.40 -25.01 16 12 C -0.34 -19.91 9.28 84.08 0.78 -19.13 16 13 H 0.09 5.30 7.43 -2.91 -0.02 5.28 16 14 C 0.00 -0.08 5.11 84.94 0.43 0.35 16 15 N -0.89 -47.89 8.85 21.67 0.19 -47.70 16 16 Si 1.01 43.03 29.57 68.60 2.03 45.06 16 17 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 20 C 0.14 6.86 4.79 85.64 0.41 7.27 16 21 C 0.52 24.73 5.53 71.24 0.39 25.13 16 22 O -0.56 -31.89 16.74 21.98 0.37 -31.53 16 23 O -0.52 -19.16 13.42 -51.41 -0.69 -19.85 16 24 N -0.26 -9.63 8.01 -48.40 -0.39 -10.01 16 25 N -0.35 -9.64 6.90 -48.72 -0.34 -9.97 16 26 H 0.46 7.99 8.96 -220.00 -1.97 6.02 16 27 O -0.19 -4.88 10.68 -6.99 -0.07 -4.96 16 28 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 32 H 0.18 1.96 8.06 -2.91 -0.02 1.93 16 33 H 0.16 6.24 8.06 -2.91 -0.02 6.22 16 34 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.12 5.81 6.37 -2.39 -0.02 5.80 16 36 H 0.13 5.24 5.33 -2.39 -0.01 5.23 16 37 H 0.41 11.59 9.10 -74.06 -0.67 10.92 16 Total: -1.00 -84.56 331.66 3.21 -81.34 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: -1.47 Total: 26.40 kcal Atomic # 6 Polarization: 29.73 SS G_CDS: 5.06 Total: 34.79 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -1.93 Total: -92.70 kcal Atomic # 8 Polarization: -94.41 SS G_CDS: -0.46 Total: -94.88 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -84.56 3.21 -81.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738486992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.916 kcal (2) G-P(sol) polarization free energy of solvation -84.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds