Wall clock time and date at job start Tue Mar 31 2020 12:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86810 * 119.99871 * 2 1 4 4 H 1.48496 * 109.46722 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47038 * 299.99679 * 3 2 1 6 6 H 1.48498 * 109.46919 * 59.99949 * 3 2 1 7 7 C 1.38804 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00041 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.76193 * 100.00084 * 185.65595 * 9 7 2 11 11 C 1.39118 * 120.18835 * 6.87232 * 10 9 7 12 12 C 1.37915 * 120.04441 * 180.27054 * 11 10 9 13 13 C 1.38656 * 120.44173 * 359.72338 * 12 11 10 14 14 C 1.37808 * 120.38281 * 0.02562 * 13 12 11 15 15 C 1.39677 * 119.93627 * 359.97438 * 14 13 12 16 16 C 1.47429 * 120.21650 * 180.02562 * 15 14 13 17 17 O 1.21604 * 120.00570 * 180.02562 * 16 15 14 18 18 N 1.34774 * 119.99445 * 0.02562 * 16 15 14 19 19 C 1.46503 * 119.99728 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47024 * 179.97438 * 19 18 16 21 21 H 1.09007 * 109.73762 * 305.59861 * 20 19 18 22 22 C 1.53504 * 109.70981 * 184.99989 * 20 19 18 23 23 C 1.53249 * 108.16151 * 177.90985 * 22 20 19 24 24 C 1.50451 * 109.44041 * 46.82484 * 23 22 20 25 25 C 1.30680 * 122.49142 * 342.51738 * 24 23 22 26 26 O 1.35135 * 123.34985 * 0.43489 * 25 24 23 27 27 H 0.96996 * 119.99759 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.97554 * 359.97406 * 11 10 9 29 29 H 1.08006 * 119.77307 * 179.73785 * 12 11 10 30 30 H 1.07999 * 119.80762 * 179.97438 * 13 12 11 31 31 H 1.07989 * 120.03066 * 179.97438 * 14 13 12 32 32 H 0.96999 * 120.00892 * 359.97438 * 18 16 15 33 33 H 1.08994 * 109.47574 * 59.99912 * 19 18 16 34 34 H 1.09001 * 109.47015 * 299.99634 * 19 18 16 35 35 H 1.09001 * 109.72324 * 297.58020 * 22 20 19 36 36 H 1.08997 * 109.72634 * 58.24097 * 22 20 19 37 37 H 1.09001 * 109.47959 * 166.81270 * 23 22 20 38 38 H 1.08996 * 109.47823 * 286.83182 * 23 22 20 39 39 H 1.07995 * 118.75097 * 162.54087 * 24 23 22 40 40 H 1.08001 * 118.32581 * 180.45977 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0096 -1.2020 0.0005 8 1 3.0896 -1.2020 0.0010 9 16 1.1287 -2.7280 0.0019 10 6 2.4712 -3.8562 0.1731 11 6 3.7585 -3.3819 0.4038 12 6 4.8080 -4.2674 0.5319 13 6 4.5901 -5.6335 0.4379 14 6 3.3214 -6.1231 0.2149 15 6 2.2468 -5.2406 0.0828 16 6 0.8869 -5.7578 -0.1554 17 8 -0.0457 -4.9859 -0.2703 18 7 0.6774 -7.0860 -0.2458 19 6 -0.6738 -7.6000 -0.4831 20 6 -0.6349 -9.1283 -0.5432 21 1 0.0951 -9.4490 -1.2865 22 6 -2.0232 -9.6673 -0.9150 23 6 -1.9316 -11.1937 -1.0167 24 6 -1.1959 -11.7319 0.1803 25 6 -0.4514 -10.9773 0.9444 26 8 -0.2797 -9.6527 0.7394 27 1 -0.4849 0.8400 -0.0004 28 1 3.9368 -2.3193 0.4780 29 1 5.8064 -3.8941 0.7067 30 1 5.4195 -6.3177 0.5394 31 1 3.1581 -7.1881 0.1423 32 1 1.4214 -7.7018 -0.1546 33 1 -1.0505 -7.2091 -1.4282 34 1 -1.3301 -7.2845 0.3280 35 1 -2.7432 -9.3925 -0.1441 36 1 -2.3341 -9.2528 -1.8740 37 1 -2.9356 -11.6169 -1.0466 38 1 -1.3951 -11.4659 -1.9256 39 1 -1.2864 -12.7818 0.4167 40 1 0.0528 -11.4357 1.7823 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781487806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:35 Heat of formation + Delta-G solvation = -34.361770 kcal Electronic energy + Delta-G solvation = -23395.425024 eV Core-core repulsion = 19880.790469 eV Total energy + Delta-G solvation = -3514.634555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46041 -39.31865 -37.43179 -34.81968 -34.18081 -32.73870 -32.01847 -30.43367 -30.24710 -27.43754 -25.81065 -24.39152 -23.36016 -22.43731 -21.79328 -20.13626 -19.16753 -18.25784 -17.35105 -16.88973 -16.33287 -15.80460 -15.78566 -15.16945 -14.81316 -14.60338 -14.31602 -14.20947 -13.87109 -13.66455 -13.32716 -13.21419 -12.97771 -12.82045 -12.60617 -12.41646 -11.80424 -11.57457 -11.21981 -11.20584 -11.19531 -10.97535 -10.90411 -10.76803 -10.30681 -9.78904 -9.63030 -9.49234 -8.78652 -8.71039 -8.66290 -8.30900 -8.04434 -6.51592 -6.44783 -4.15108 1.55608 2.04263 2.04452 3.11648 3.12738 3.13132 3.21373 3.42227 3.49693 3.54665 4.07623 4.36938 4.49152 4.51482 4.64233 4.83492 4.95322 4.96292 5.08064 5.15109 5.30352 5.34399 5.37626 5.41927 5.56223 5.61628 5.62317 5.74954 5.87494 6.00781 6.04337 6.14213 6.26314 6.40956 6.61592 6.73130 6.87535 7.04942 7.15418 7.35322 7.46559 7.61223 7.91617 8.18108 8.80319 9.01630 10.58541 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.003002 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.320745 B = 9324.309393 C =10496.898126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.083 3.917 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.595 4.595 8 H 0.091 0.909 9 S 0.183 5.817 10 C -0.056 4.056 11 C -0.154 4.154 12 C -0.077 4.077 13 C -0.187 4.187 14 C -0.060 4.060 15 C -0.177 4.177 16 C 0.553 3.447 17 O -0.510 6.510 18 N -0.735 5.735 19 C 0.132 3.868 20 C 0.078 3.922 21 H 0.078 0.922 22 C -0.153 4.153 23 C -0.080 4.080 24 C -0.288 4.288 25 C 0.058 3.942 26 O -0.316 6.316 27 H 0.274 0.726 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.397 0.603 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.119 0.881 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.081 -20.682 -0.975 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.128 4.128 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.741 4.741 8 H 0.109 0.891 9 S 0.448 5.552 10 C -0.176 4.176 11 C -0.179 4.179 12 C -0.099 4.099 13 C -0.212 4.212 14 C -0.080 4.080 15 C -0.192 4.192 16 C 0.342 3.658 17 O -0.387 6.387 18 N -0.390 5.390 19 C 0.008 3.992 20 C 0.022 3.978 21 H 0.096 0.904 22 C -0.191 4.191 23 C -0.117 4.117 24 C -0.308 4.308 25 C -0.005 4.005 26 O -0.230 6.230 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.130 0.870 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.233 0.767 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.207 -19.694 -1.064 19.760 hybrid contribution 2.256 0.524 0.069 2.317 sum 1.049 -19.171 -0.995 19.225 Atomic orbital electron populations 1.69985 1.06229 1.28280 1.44578 1.25100 0.94966 0.99622 0.93099 0.86102 0.79969 0.81321 0.78156 1.19158 1.20249 1.20239 1.24098 0.97033 0.94076 1.58940 0.89103 1.84760 1.02295 0.92895 1.75294 1.23085 1.00731 0.96986 0.96784 1.21439 0.91724 1.00861 1.03848 1.21087 0.98114 0.93382 0.97307 1.20632 0.96327 0.95257 1.08938 1.20899 0.92571 0.97478 0.97070 1.19095 0.92520 0.92628 1.14967 1.18303 0.89042 0.81467 0.76966 1.90784 1.43593 1.55388 1.48960 1.45740 1.09465 1.07311 1.76520 1.21291 0.85783 0.89125 1.03039 1.22799 0.96884 0.93816 0.84293 0.90398 1.22213 0.96814 0.96419 1.03685 1.20327 1.00450 0.94291 0.96640 1.22506 1.05196 1.00924 1.02165 1.22036 0.96515 0.82740 0.99162 1.86010 1.81279 1.21464 1.34226 0.91602 0.84365 0.87029 0.87086 0.87161 0.76740 0.89576 0.90510 0.90148 0.89647 0.90562 0.91217 0.86339 0.82711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.82 13.22 55.49 0.73 -24.09 16 2 C 0.08 2.28 5.49 -17.46 -0.10 2.19 16 3 Si 0.92 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.59 -16.48 9.00 30.94 0.28 -16.20 16 8 H 0.09 2.39 4.98 -52.49 -0.26 2.13 16 9 S 0.18 4.95 18.56 -107.50 -2.00 2.95 16 10 C -0.06 -1.29 6.14 -38.39 -0.24 -1.53 16 11 C -0.15 -3.24 9.22 -39.37 -0.36 -3.60 16 12 C -0.08 -1.32 10.03 -39.55 -0.40 -1.72 16 13 C -0.19 -2.91 10.02 -39.58 -0.40 -3.31 16 14 C -0.06 -0.97 9.53 -39.20 -0.37 -1.34 16 15 C -0.18 -3.54 5.89 -104.75 -0.62 -4.16 16 16 C 0.55 10.84 7.75 -12.52 -0.10 10.74 16 17 O -0.51 -11.98 13.77 5.27 0.07 -11.91 16 18 N -0.74 -10.72 5.47 -61.38 -0.34 -11.06 16 19 C 0.13 1.65 5.36 -4.04 -0.02 1.63 16 20 C 0.08 0.77 2.88 -26.47 -0.08 0.69 16 21 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 22 C -0.15 -1.27 5.54 -26.34 -0.15 -1.41 16 23 C -0.08 -0.60 6.23 -27.88 -0.17 -0.77 16 24 C -0.29 -2.30 9.97 -36.06 -0.36 -2.66 16 25 C 0.06 0.51 10.88 29.10 0.32 0.83 16 26 O -0.32 -3.46 10.02 -17.11 -0.17 -3.63 16 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.14 3.04 5.03 -52.49 -0.26 2.77 16 29 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 30 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.37 6.40 -52.49 -0.34 1.03 16 32 H 0.40 4.83 6.50 -40.82 -0.27 4.56 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -32.50 346.32 -9.17 -41.67 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.91 Total: 5.73 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -2.76 Total: -20.62 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.40 Total: -35.15 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.10 Total: -15.54 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -2.00 Total: 2.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.50 -9.17 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781487806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.313 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds