Wall clock time and date at job start Tue Mar 31 2020 12:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86810 * 119.99871 * 2 1 4 4 H 1.48496 * 109.46722 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47038 * 299.99679 * 3 2 1 6 6 H 1.48498 * 109.46919 * 59.99949 * 3 2 1 7 7 C 1.38804 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00041 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.76193 * 100.00084 * 185.65595 * 9 7 2 11 11 C 1.39118 * 120.18835 * 6.87232 * 10 9 7 12 12 C 1.37915 * 120.04441 * 180.27054 * 11 10 9 13 13 C 1.38656 * 120.44173 * 359.72338 * 12 11 10 14 14 C 1.37808 * 120.38281 * 0.02562 * 13 12 11 15 15 C 1.39677 * 119.93627 * 359.97438 * 14 13 12 16 16 C 1.47429 * 120.21650 * 180.02562 * 15 14 13 17 17 O 1.21604 * 120.00570 * 180.02562 * 16 15 14 18 18 N 1.34774 * 119.99445 * 0.02562 * 16 15 14 19 19 C 1.46503 * 119.99728 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47024 * 179.97438 * 19 18 16 21 21 H 1.09007 * 109.73762 * 305.59861 * 20 19 18 22 22 C 1.53504 * 109.70981 * 184.99989 * 20 19 18 23 23 C 1.53249 * 108.16151 * 177.90985 * 22 20 19 24 24 C 1.50451 * 109.44041 * 46.82484 * 23 22 20 25 25 C 1.30680 * 122.49142 * 342.51738 * 24 23 22 26 26 O 1.35135 * 123.34985 * 0.43489 * 25 24 23 27 27 H 0.96996 * 119.99759 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.97554 * 359.97406 * 11 10 9 29 29 H 1.08006 * 119.77307 * 179.73785 * 12 11 10 30 30 H 1.07999 * 119.80762 * 179.97438 * 13 12 11 31 31 H 1.07989 * 120.03066 * 179.97438 * 14 13 12 32 32 H 0.96999 * 120.00892 * 359.97438 * 18 16 15 33 33 H 1.08994 * 109.47574 * 59.99912 * 19 18 16 34 34 H 1.09001 * 109.47015 * 299.99634 * 19 18 16 35 35 H 1.09001 * 109.72324 * 297.58020 * 22 20 19 36 36 H 1.08997 * 109.72634 * 58.24097 * 22 20 19 37 37 H 1.09001 * 109.47959 * 166.81270 * 23 22 20 38 38 H 1.08996 * 109.47823 * 286.83182 * 23 22 20 39 39 H 1.07995 * 118.75097 * 162.54087 * 24 23 22 40 40 H 1.08001 * 118.32581 * 180.45977 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3965 -1.2125 6 1 1.8907 2.3965 1.2125 7 6 2.0096 -1.2020 0.0005 8 1 3.0896 -1.2020 0.0010 9 16 1.1287 -2.7280 0.0019 10 6 2.4712 -3.8562 0.1731 11 6 3.7585 -3.3819 0.4038 12 6 4.8080 -4.2674 0.5319 13 6 4.5901 -5.6335 0.4379 14 6 3.3214 -6.1231 0.2149 15 6 2.2468 -5.2406 0.0828 16 6 0.8869 -5.7578 -0.1554 17 8 -0.0457 -4.9859 -0.2703 18 7 0.6774 -7.0860 -0.2458 19 6 -0.6738 -7.6000 -0.4831 20 6 -0.6349 -9.1283 -0.5432 21 1 0.0951 -9.4490 -1.2865 22 6 -2.0232 -9.6673 -0.9150 23 6 -1.9316 -11.1937 -1.0167 24 6 -1.1959 -11.7319 0.1803 25 6 -0.4514 -10.9773 0.9444 26 8 -0.2797 -9.6527 0.7394 27 1 -0.4849 0.8400 -0.0004 28 1 3.9368 -2.3193 0.4780 29 1 5.8064 -3.8941 0.7067 30 1 5.4195 -6.3177 0.5394 31 1 3.1581 -7.1881 0.1423 32 1 1.4214 -7.7018 -0.1546 33 1 -1.0505 -7.2091 -1.4282 34 1 -1.3301 -7.2845 0.3280 35 1 -2.7432 -9.3925 -0.1441 36 1 -2.3341 -9.2528 -1.8740 37 1 -2.9356 -11.6169 -1.0466 38 1 -1.3951 -11.4659 -1.9256 39 1 -1.2864 -12.7818 0.4167 40 1 0.0528 -11.4357 1.7823 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781487806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:34 Heat of formation + Delta-G solvation = -55.672318 kcal Electronic energy + Delta-G solvation = -23396.349119 eV Core-core repulsion = 19880.790469 eV Total energy + Delta-G solvation = -3515.558650 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34526 -40.68692 -38.93844 -36.08808 -34.85548 -34.75923 -33.09840 -31.79189 -31.71468 -28.38088 -27.83438 -25.32099 -24.36487 -23.65830 -23.18678 -21.61249 -20.12395 -19.74704 -18.85336 -17.75042 -17.39485 -17.24505 -17.01998 -16.82255 -16.13912 -15.89912 -15.56265 -15.35196 -15.19965 -14.91561 -14.67431 -14.35013 -14.22900 -13.84113 -13.68141 -13.42433 -13.28574 -13.14298 -12.99760 -12.86051 -12.53526 -12.04437 -11.84022 -11.72939 -11.57240 -11.44461 -11.39269 -11.20151 -10.41092 -10.16625 -9.91003 -9.75894 -9.30416 -8.46072 -8.44573 -6.23694 0.04172 0.54646 1.27232 1.35695 1.42952 1.46110 1.65536 2.01896 2.14451 2.26274 2.43237 2.88182 3.05073 3.25529 3.59445 3.74929 3.93580 3.96928 4.02587 4.14433 4.27015 4.28778 4.45916 4.52272 4.61395 4.62841 4.72111 4.79907 4.85452 4.88195 5.02139 5.11711 5.18735 5.37199 5.40764 5.44574 5.47970 5.57922 5.67980 5.68182 6.10822 6.17225 6.61173 6.67462 6.96568 7.34866 8.61140 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.003002 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.320745 B = 9324.309393 C =10496.898126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 0.994 3.006 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.601 4.601 8 H 0.094 0.906 9 S 0.063 5.937 10 C -0.072 4.072 11 C -0.175 4.175 12 C -0.069 4.069 13 C -0.157 4.157 14 C -0.053 4.053 15 C -0.183 4.183 16 C 0.546 3.454 17 O -0.556 6.556 18 N -0.711 5.711 19 C 0.129 3.871 20 C 0.087 3.913 21 H 0.095 0.905 22 C -0.153 4.153 23 C -0.082 4.082 24 C -0.285 4.285 25 C 0.038 3.962 26 O -0.337 6.337 27 H 0.275 0.725 28 H 0.119 0.881 29 H 0.150 0.850 30 H 0.166 0.834 31 H 0.158 0.842 32 H 0.413 0.587 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.135 0.865 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.365 -24.223 -1.025 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.815 3.185 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.747 4.747 8 H 0.112 0.888 9 S 0.322 5.678 10 C -0.190 4.190 11 C -0.201 4.201 12 C -0.090 4.090 13 C -0.180 4.180 14 C -0.073 4.073 15 C -0.196 4.196 16 C 0.335 3.665 17 O -0.437 6.437 18 N -0.366 5.366 19 C 0.006 3.994 20 C 0.031 3.969 21 H 0.113 0.887 22 C -0.191 4.191 23 C -0.119 4.119 24 C -0.304 4.304 25 C -0.024 4.024 26 O -0.252 6.252 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.168 0.832 30 H 0.184 0.816 31 H 0.176 0.824 32 H 0.251 0.749 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.153 0.847 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 2.156 -23.369 -1.105 23.495 hybrid contribution 1.409 1.176 0.114 1.838 sum 3.564 -22.194 -0.992 22.500 Atomic orbital electron populations 1.70138 1.08035 1.29099 1.46770 1.26157 0.95864 1.03448 0.92737 0.84981 0.78795 0.76302 0.78394 1.18048 1.19565 1.19501 1.24278 0.97064 0.94380 1.59024 0.88785 1.84929 1.06506 0.95454 1.80937 1.22986 0.99735 0.97290 0.98959 1.21457 0.92242 1.00946 1.05412 1.21545 0.98514 0.93820 0.95117 1.21323 0.97445 0.95167 1.04073 1.21429 0.91541 0.99238 0.95114 1.19484 0.94141 0.92083 1.13882 1.18499 0.88621 0.82745 0.76640 1.90784 1.44890 1.56964 1.51045 1.45548 1.10960 1.05716 1.74344 1.21397 0.84207 0.91535 1.02271 1.22691 0.98322 0.91313 0.84618 0.88709 1.22225 0.95598 0.97389 1.03903 1.20400 1.01253 0.93259 0.97006 1.22775 1.04158 1.01685 1.01787 1.22411 0.97676 0.81938 1.00344 1.85964 1.81778 1.22886 1.34574 0.91530 0.86322 0.83230 0.81640 0.82411 0.74914 0.89535 0.92508 0.91280 0.88496 0.89527 0.90076 0.84750 0.80817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 2 C 0.02 1.36 5.49 84.87 0.47 1.82 16 3 Si 0.99 44.34 29.55 68.60 2.03 46.37 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.60 -35.48 9.00 67.96 0.61 -34.87 16 8 H 0.09 5.24 4.98 -2.91 -0.01 5.23 16 9 S 0.06 3.69 18.56 -56.49 -1.05 2.64 16 10 C -0.07 -3.41 6.14 23.04 0.14 -3.27 16 11 C -0.18 -7.39 9.22 22.40 0.21 -7.18 16 12 C -0.07 -2.10 10.03 22.29 0.22 -1.88 16 13 C -0.16 -3.92 10.02 22.27 0.22 -3.70 16 14 C -0.05 -1.48 9.53 22.52 0.21 -1.26 16 15 C -0.18 -7.19 5.89 -19.95 -0.12 -7.31 16 16 C 0.55 21.78 7.75 86.66 0.67 22.45 16 17 O -0.56 -27.94 13.77 -4.04 -0.06 -28.00 16 18 N -0.71 -19.93 5.47 -466.37 -2.55 -22.48 16 19 C 0.13 3.23 5.36 86.38 0.46 3.69 16 20 C 0.09 1.55 2.88 30.76 0.09 1.64 16 21 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 22 C -0.15 -2.30 5.54 30.85 0.17 -2.13 16 23 C -0.08 -1.01 6.23 29.85 0.19 -0.83 16 24 C -0.28 -3.76 9.97 25.90 0.26 -3.50 16 25 C 0.04 0.58 10.88 68.11 0.74 1.32 16 26 O -0.34 -6.74 10.02 -84.12 -0.84 -7.59 16 27 H 0.28 15.67 8.31 -92.71 -0.77 14.89 16 28 H 0.12 5.41 5.03 -2.91 -0.01 5.39 16 29 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 31 H 0.16 2.88 6.40 -2.92 -0.02 2.86 16 32 H 0.41 8.71 6.50 -92.71 -0.60 8.11 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -79.68 346.32 2.83 -76.84 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.47 Total: 22.91 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 4.55 Total: -35.00 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -2.27 Total: -78.18 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.90 Total: -35.58 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.05 Total: 2.64 kcal Total: -79.68 2.83 -76.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781487806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.171 kcal (2) G-P(sol) polarization free energy of solvation -79.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds