Wall clock time and date at job start Tue Mar 31 2020 12:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31546 * 1 3 3 Si 1.86800 * 120.00454 * 2 1 4 4 H 1.48496 * 109.47107 * 269.99824 * 3 2 1 5 5 H 1.48507 * 109.47038 * 29.99985 * 3 2 1 6 6 H 1.48501 * 109.47512 * 149.99637 * 3 2 1 7 7 C 1.38807 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99765 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00057 * 359.97438 * 7 2 1 10 10 C 1.76202 * 100.00156 * 185.64669 * 9 7 2 11 11 C 1.39110 * 120.18728 * 8.25126 * 10 9 7 12 12 C 1.37909 * 120.05008 * 179.97438 * 11 10 9 13 13 C 1.38661 * 120.43811 * 0.02562 * 12 11 10 14 14 C 1.37811 * 120.38082 * 359.66823 * 13 12 11 15 15 C 1.39677 * 119.93569 * 0.62898 * 14 13 12 16 16 C 1.47430 * 120.21406 * 179.67522 * 15 14 13 17 17 O 1.21606 * 119.99861 * 142.60079 * 16 15 14 18 18 N 1.34775 * 119.99895 * 322.59420 * 16 15 14 19 19 C 1.50281 * 127.01371 * 354.16032 * 18 16 15 20 20 C 1.54390 * 103.52708 * 218.75269 * 19 18 16 21 21 H 1.09004 * 117.61831 * 197.14147 * 20 19 18 22 22 C 1.53004 * 118.12267 * 41.57674 * 20 19 18 23 23 C 1.53001 * 60.49241 * 266.87900 * 22 20 19 24 24 C 1.53000 * 119.53723 * 248.20977 * 23 22 20 25 25 O 1.42908 * 109.47031 * 250.23656 * 24 23 22 26 26 C 1.48144 * 127.84057 * 174.98198 * 18 16 15 27 27 H 0.97004 * 119.99969 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.97517 * 359.97438 * 11 10 9 29 29 H 1.07999 * 119.78629 * 179.97438 * 12 11 10 30 30 H 1.08005 * 119.81025 * 179.97438 * 13 12 11 31 31 H 1.07994 * 120.03328 * 180.30296 * 14 13 12 32 32 H 1.08999 * 109.11254 * 101.17970 * 19 18 16 33 33 H 1.08993 * 112.72798 * 338.07248 * 19 18 16 34 34 H 1.08997 * 117.44023 * 14.50469 * 22 20 19 35 35 H 1.09005 * 117.44508 * 159.25092 * 22 20 19 36 36 H 1.09005 * 109.47322 * 10.23347 * 24 23 22 37 37 H 1.08991 * 109.47252 * 130.23615 * 24 23 22 38 38 H 0.96695 * 113.99775 * 180.02562 * 25 24 23 39 39 H 1.09003 * 110.40399 * 21.63631 * 26 18 16 40 40 H 1.08999 * 110.41117 * 259.20944 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5471 1.4401 0.7001 7 6 2.0094 -1.2021 0.0005 8 1 3.0895 -1.2021 0.0010 9 16 1.1284 -2.7280 0.0019 10 6 2.4709 -3.8564 0.1729 11 6 3.7533 -3.3836 0.4319 12 6 4.8019 -4.2693 0.5657 13 6 4.5887 -5.6340 0.4433 14 6 3.3246 -6.1222 0.1930 15 6 2.2522 -5.2390 0.0484 16 6 0.8985 -5.7543 -0.2265 17 8 -0.0698 -5.2199 0.2791 18 7 0.7342 -6.8175 -1.0383 19 6 1.7966 -7.5183 -1.8374 20 6 1.0861 -7.8543 -3.1663 21 1 1.5432 -8.6085 -3.8071 22 6 0.1717 -6.7941 -3.7834 23 6 -0.4241 -7.8568 -2.8578 24 6 -1.3635 -8.9180 -3.4341 25 8 -2.6942 -8.6779 -2.9716 26 6 -0.5227 -7.5366 -1.3508 27 1 -0.4850 0.8401 0.0004 28 1 3.9279 -2.3222 0.5283 29 1 5.7959 -3.8976 0.7664 30 1 5.4174 -6.3185 0.5496 31 1 3.1641 -7.1864 0.1036 32 1 2.0873 -8.4327 -1.3202 33 1 2.6685 -6.8906 -2.0207 34 1 0.2490 -5.7778 -3.3972 35 1 -0.0457 -6.8764 -4.8484 36 1 -1.3429 -8.8689 -4.5229 37 1 -1.0386 -9.9062 -3.1088 38 1 -3.3448 -9.3144 -3.2980 39 1 -1.3845 -6.8991 -1.1533 40 1 -0.5886 -8.4568 -0.7703 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000783802218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:13 Heat of formation + Delta-G solvation = -8.915320 kcal Electronic energy + Delta-G solvation = -24157.933760 eV Core-core repulsion = 20644.402646 eV Total energy + Delta-G solvation = -3513.531114 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.103 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47784 -38.67259 -37.23849 -36.49252 -33.29318 -32.75441 -30.67108 -30.31369 -28.90883 -26.44058 -26.18563 -25.82985 -22.79080 -21.99222 -20.90436 -19.52109 -19.21206 -17.90528 -17.44218 -16.83613 -16.25598 -15.85659 -15.51690 -15.15391 -14.91187 -14.62078 -14.13161 -13.77652 -13.44888 -13.23376 -13.17402 -13.00579 -12.92753 -12.74184 -12.16520 -11.92621 -11.72267 -11.57060 -11.32524 -11.19622 -11.14273 -10.96571 -10.53898 -10.32643 -10.08688 -9.79720 -9.61600 -9.55285 -9.48263 -8.73496 -8.55347 -8.31849 -8.27757 -6.55198 -6.45891 -4.18021 1.60206 2.00760 3.09403 3.11658 3.13206 3.19930 3.30751 3.38877 3.43454 4.00358 4.04848 4.34005 4.41552 4.61175 4.71745 4.92002 4.94782 5.06004 5.11635 5.16224 5.25286 5.35542 5.39441 5.54036 5.59690 5.63448 5.74042 5.80678 5.81468 5.88838 6.06837 6.13755 6.16365 6.35675 6.43798 6.62116 6.87595 7.03562 7.13227 7.43042 7.44138 7.58131 7.84751 8.15711 8.70584 8.99517 10.58297 Molecular weight = 319.10amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.004060 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.012605 B = 6894.843766 C = 8112.084833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.578 4.578 8 H 0.092 0.908 9 S 0.131 5.869 10 C -0.049 4.049 11 C -0.152 4.152 12 C -0.078 4.078 13 C -0.184 4.184 14 C -0.066 4.066 15 C -0.165 4.165 16 C 0.585 3.415 17 O -0.511 6.511 18 N -0.632 5.632 19 C 0.129 3.871 20 C -0.170 4.170 21 H 0.123 0.877 22 C -0.132 4.132 23 C -0.152 4.152 24 C 0.129 3.871 25 O -0.565 6.565 26 C 0.154 3.846 27 H 0.275 0.725 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.378 0.622 39 H 0.089 0.911 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -18.482 -7.401 20.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.130 4.130 3 Si 0.747 3.253 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.725 4.725 8 H 0.110 0.890 9 S 0.393 5.607 10 C -0.168 4.168 11 C -0.178 4.178 12 C -0.100 4.100 13 C -0.208 4.208 14 C -0.086 4.086 15 C -0.179 4.179 16 C 0.375 3.625 17 O -0.386 6.386 18 N -0.368 5.368 19 C 0.006 3.994 20 C -0.188 4.188 21 H 0.141 0.859 22 C -0.169 4.169 23 C -0.153 4.153 24 C 0.050 3.950 25 O -0.370 6.370 26 C 0.031 3.969 27 H 0.085 0.915 28 H 0.156 0.844 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.225 0.775 39 H 0.108 0.892 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.720 -17.355 -6.826 18.729 hybrid contribution 1.765 0.570 -0.267 1.874 sum 3.485 -16.786 -7.093 18.553 Atomic orbital electron populations 1.69981 1.06231 1.28417 1.44410 1.25111 0.95026 0.99660 0.93160 0.86101 0.79652 0.80819 0.78699 1.19879 1.20443 1.19194 1.23708 0.96529 0.92638 1.59639 0.88993 1.84375 1.03548 0.94712 1.78057 1.22956 1.00553 0.96625 0.96653 1.21411 0.91722 1.00883 1.03774 1.21087 0.98131 0.93372 0.97361 1.20653 0.96345 0.95272 1.08534 1.20987 0.92113 0.97893 0.97576 1.19062 0.92483 0.92751 1.13583 1.17985 0.89263 0.77476 0.77737 1.90830 1.41318 1.55948 1.50464 1.49280 1.09455 1.31629 1.46484 1.22344 0.91794 0.96861 0.88384 1.23689 0.91764 1.03780 0.99602 0.85882 1.23020 0.99907 0.96137 0.97849 1.22533 0.94781 1.02021 0.95982 1.21323 0.81860 0.95341 0.96435 1.86562 1.17817 1.57247 1.75369 1.21401 0.88235 0.96466 0.90789 0.91519 0.84352 0.86964 0.86995 0.86761 0.90632 0.88695 0.88135 0.87977 0.93249 0.93242 0.77487 0.89213 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.03 13.22 55.49 0.73 -24.30 16 2 C 0.08 2.25 5.49 -17.46 -0.10 2.15 16 3 Si 0.92 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.58 -16.08 8.98 30.94 0.28 -15.80 16 8 H 0.09 2.41 5.02 -52.48 -0.26 2.15 16 9 S 0.13 3.58 19.26 -107.50 -2.07 1.51 16 10 C -0.05 -1.14 6.13 -38.39 -0.24 -1.37 16 11 C -0.15 -3.21 9.20 -39.38 -0.36 -3.57 16 12 C -0.08 -1.33 10.03 -39.55 -0.40 -1.73 16 13 C -0.18 -2.83 10.02 -39.58 -0.40 -3.22 16 14 C -0.07 -1.07 7.93 -39.20 -0.31 -1.38 16 15 C -0.16 -3.36 5.47 -104.75 -0.57 -3.93 16 16 C 0.58 12.14 7.22 -12.52 -0.09 12.05 16 17 O -0.51 -12.72 15.25 5.27 0.08 -12.63 16 18 N -0.63 -10.18 2.94 -168.78 -0.50 -10.68 16 19 C 0.13 1.52 5.23 -1.20 -0.01 1.51 16 20 C -0.17 -1.72 7.00 -89.29 -0.63 -2.34 16 21 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 22 C -0.13 -1.60 9.62 -26.73 -0.26 -1.86 16 23 C -0.15 -1.76 2.79 -153.19 -0.43 -2.19 16 24 C 0.13 1.13 7.38 37.16 0.27 1.40 16 25 O -0.56 -5.66 13.35 -35.23 -0.47 -6.13 16 26 C 0.15 2.23 6.46 -2.41 -0.02 2.21 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.14 3.03 5.08 -52.49 -0.27 2.77 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 31 H 0.11 1.51 6.42 -52.49 -0.34 1.17 16 32 H 0.08 0.71 7.89 -51.93 -0.41 0.30 16 33 H 0.09 1.16 6.69 -51.93 -0.35 0.81 16 34 H 0.10 1.56 8.00 -51.93 -0.42 1.15 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 0.36 8.04 -51.93 -0.42 -0.06 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 1.84 9.12 45.56 0.42 2.26 16 39 H 0.09 1.57 7.85 -51.93 -0.41 1.16 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -34.42 344.96 -9.41 -43.83 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.12 Total: 5.50 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.24 Total: -18.06 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.24 Total: -34.98 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.39 Total: -18.77 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -2.07 Total: 1.51 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.42 -9.41 -43.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783802218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.919 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds