Wall clock time and date at job start Tue Mar 31 2020 12:49:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46508 * 1
3 3 C 1.35084 * 126.40453 * 2 1
4 4 Cl 1.73601 * 125.65455 * 359.97438 * 3 2 1
5 5 N 1.30648 * 108.69237 * 179.70787 * 3 2 1
6 6 C 1.34223 * 109.28083 * 0.44394 * 5 3 2
7 7 Cl 1.73599 * 125.98567 * 179.82436 * 6 5 3
8 8 C 1.34702 * 108.03191 * 359.55496 * 6 5 3
9 9 C 1.50701 * 126.59389 * 180.23229 * 8 6 5
10 10 N 1.46898 * 109.47026 * 270.02201 * 9 8 6
11 11 C 1.46897 * 111.00362 * 179.97438 * 10 9 8
12 12 C 1.53000 * 109.47525 * 179.97438 * 11 10 9
13 13 C 1.52993 * 109.47329 * 300.00642 * 12 11 10
14 14 C 1.53004 * 109.46530 * 60.00589 * 12 11 10
15 15 C 1.53001 * 109.47113 * 180.02562 * 12 11 10
16 16 C 1.50699 * 109.46861 * 180.02562 * 15 12 11
17 17 H 1.07995 * 120.00450 * 359.97438 * 16 15 12
18 18 C 1.37882 * 119.99553 * 180.02562 * 16 15 12
19 19 N 1.31515 * 120.00233 * 359.97438 * 18 16 15
20 20 Si 1.86800 * 119.99641 * 179.97438 * 18 16 15
21 21 H 1.48502 * 109.47242 * 89.99776 * 20 18 16
22 22 H 1.48497 * 109.46972 * 209.99694 * 20 18 16
23 23 H 1.48502 * 109.47394 * 329.99624 * 20 18 16
24 24 H 1.09000 * 109.47072 * 270.02509 * 1 2 3
25 25 H 1.08996 * 109.47042 * 30.02568 * 1 2 3
26 26 H 1.09001 * 109.46928 * 150.03187 * 1 2 3
27 27 H 1.08997 * 109.47101 * 30.02463 * 9 8 6
28 28 H 1.09000 * 109.46792 * 150.02638 * 9 8 6
29 29 H 1.00909 * 110.99838 * 56.05021 * 10 9 8
30 30 H 1.08996 * 109.47489 * 300.00863 * 11 10 9
31 31 H 1.09010 * 109.46717 * 60.00394 * 11 10 9
32 32 H 1.09002 * 109.47202 * 59.99533 * 13 12 11
33 33 H 1.08999 * 109.47313 * 179.97438 * 13 12 11
34 34 H 1.08998 * 109.46892 * 299.99924 * 13 12 11
35 35 H 1.09005 * 109.47151 * 60.00119 * 14 12 11
36 36 H 1.08999 * 109.46678 * 180.02562 * 14 12 11
37 37 H 1.09002 * 109.47039 * 299.99878 * 14 12 11
38 38 H 1.09004 * 109.46884 * 300.00303 * 15 12 11
39 39 H 1.08998 * 109.47070 * 60.00100 * 15 12 11
40 40 H 0.96998 * 119.99601 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2668 1.0872 0.0000
4 17 1.7320 2.7388 -0.0006
5 7 3.5113 0.6897 0.0063
6 6 3.5481 -0.6520 0.0007
7 17 4.9802 -1.6331 0.0014
8 6 2.2792 -1.1039 0.0005
9 6 1.8388 -2.5451 0.0000
10 7 1.6963 -3.0131 -1.3851
11 6 1.2678 -4.4176 -1.4249
12 6 1.1300 -4.8678 -2.8807
13 6 0.0896 -3.9970 -3.5876
14 6 2.4793 -4.7262 -3.5880
15 6 0.6831 -6.3305 -2.9220
16 6 0.5480 -6.7741 -4.3559
17 1 0.7593 -6.0820 -5.1575
18 6 0.1536 -8.0635 -4.6443
19 7 -0.1043 -8.9062 -3.6682
20 14 -0.0145 -8.6132 -6.4217
21 1 1.2798 -9.1684 -6.8927
22 1 -1.0659 -9.6572 -6.5195
23 1 -0.3911 -7.4509 -7.2658
24 1 -0.3633 0.0004 1.0277
25 1 -0.3633 0.8897 -0.5142
26 1 -0.3633 -0.8903 -0.5133
27 1 2.5835 -3.1527 0.5140
28 1 0.8812 -2.6325 0.5133
29 1 2.5536 -2.8822 -1.9010
30 1 2.0087 -5.0380 -0.9209
31 1 0.3062 -4.5185 -0.9213
32 1 0.4076 -2.9548 -3.5581
33 1 -0.0082 -4.3174 -4.6248
34 1 -0.8716 -4.0979 -3.0836
35 1 3.2205 -5.3467 -3.0844
36 1 2.3811 -5.0465 -4.6253
37 1 2.7973 -3.6840 -3.5586
38 1 1.4241 -6.9512 -2.4182
39 1 -0.2782 -6.4311 -2.4181
40 1 -0.3814 -9.8133 -3.8712
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000808429743.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:49:25
Heat of formation + Delta-G solvation = 36.037206 kcal
Electronic energy + Delta-G solvation = -22382.017149 eV
Core-core repulsion = 18898.251518 eV
Total energy + Delta-G solvation = -3483.765631 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 319.091 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-42.58702 -37.81030 -37.37145 -36.78066 -34.91661 -34.22766 -32.30756 -30.13820
-27.42723 -27.06052 -26.38133 -26.05710 -24.25557 -22.23530 -21.99095 -20.63408
-18.15176 -17.65040 -16.61000 -16.30665 -15.95522 -15.33486 -14.89562 -14.69226
-14.47320 -14.18698 -13.73215 -13.38704 -13.21728 -12.84783 -12.73790 -12.51747
-12.28556 -12.03643 -11.96450 -11.79456 -11.60336 -11.42694 -11.02227 -10.91599
-10.80787 -10.53662 -10.43235 -10.32409 -10.16874 -10.00465 -9.73774 -9.09840
-8.88914 -8.64120 -8.34150 -8.27062 -5.98885 -3.98970 0.88002 1.32922
1.61693 2.38022 2.68485 3.31777 3.38638 3.41323 4.10496 4.38243
4.40825 4.48679 4.74295 4.79244 5.08175 5.13877 5.34901 5.37238
5.57645 5.66136 5.72447 5.79629 5.92765 6.17149 6.25270 6.33311
6.44927 6.59555 6.72689 6.78243 7.06055 7.15933 7.20145 7.24241
7.28148 7.48960 7.66668 7.81074 8.01203 8.45338 9.06355 9.64107
11.12747
Molecular weight = 319.09amu
Principal moments of inertia in cm(-1)
A = 0.021447 B = 0.002771 C = 0.002612
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1305.257116 B =10101.545543 C =10719.208927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.063 3.937
2 N -0.428 5.428
3 C 0.253 3.747
4 Cl 0.041 6.959
5 N -0.456 5.456
6 C 0.059 3.941
7 Cl 0.001 6.999
8 C 0.035 3.965
9 C 0.126 3.874
10 N -0.683 5.683
11 C 0.070 3.930
12 C -0.058 4.058
13 C -0.115 4.115
14 C -0.130 4.130
15 C 0.035 3.965
16 C -0.507 4.507
17 H 0.059 0.941
18 C 0.055 3.945
19 N -0.898 5.898
20 Si 0.887 3.113
21 H -0.282 1.282
22 H -0.288 1.288
23 H -0.274 1.274
24 H 0.084 0.916
25 H 0.093 0.907
26 H 0.107 0.893
27 H 0.062 0.938
28 H 0.086 0.914
29 H 0.346 0.654
30 H 0.029 0.971
31 H 0.068 0.932
32 H 0.040 0.960
33 H 0.055 0.945
34 H 0.039 0.961
35 H 0.042 0.958
36 H 0.064 0.936
37 H 0.033 0.967
38 H 0.013 0.987
39 H 0.015 0.985
40 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.248 19.817 10.457 22.519
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 N -0.114 5.114
3 C -0.034 4.034
4 Cl 0.069 6.931
5 N -0.179 5.179
6 C -0.098 4.098
7 Cl 0.029 6.971
8 C -0.082 4.082
9 C -0.004 4.004
10 N -0.316 5.316
11 C -0.058 4.058
12 C -0.058 4.058
13 C -0.173 4.173
14 C -0.187 4.187
15 C -0.003 4.003
16 C -0.546 4.546
17 H 0.077 0.923
18 C -0.146 4.146
19 N -0.537 5.537
20 Si 0.715 3.285
21 H -0.208 1.208
22 H -0.214 1.214
23 H -0.199 1.199
24 H 0.103 0.897
25 H 0.111 0.889
26 H 0.126 0.874
27 H 0.080 0.920
28 H 0.104 0.896
29 H 0.165 0.835
30 H 0.047 0.953
31 H 0.087 0.913
32 H 0.059 0.941
33 H 0.074 0.926
34 H 0.058 0.942
35 H 0.061 0.939
36 H 0.083 0.917
37 H 0.052 0.948
38 H 0.032 0.968
39 H 0.033 0.967
40 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 2.131 20.468 10.431 23.071
hybrid contribution 0.079 -1.183 -0.667 1.360
sum 2.211 19.285 9.764 21.729
Atomic orbital electron populations
1.22312 0.74708 1.06393 1.04392 1.45041 1.08430 1.04447 1.53470
1.22712 0.85667 0.84660 1.10339 1.98426 1.88609 1.08821 1.97244
1.69816 1.17422 1.10596 1.20072 1.20309 0.87754 0.88973 1.12741
1.98381 1.36065 1.65242 1.97389 1.20853 0.88525 0.90126 1.08723
1.20380 1.01493 0.85753 0.92798 1.60683 1.38573 1.22146 1.10181
1.22161 0.99463 0.85233 0.98992 1.20633 0.95331 0.98735 0.91102
1.21596 0.97546 0.97510 1.00626 1.21778 0.96534 0.98366 1.02054
1.19117 0.96125 0.87892 0.97155 1.21228 1.44697 0.96276 0.92361
0.92295 1.25010 0.95776 0.96983 0.96786 1.69961 1.47074 1.05542
1.31160 0.86671 0.77718 0.78445 0.85627 1.20799 1.21381 1.19914
0.89724 0.88880 0.87432 0.91965 0.89612 0.83468 0.95271 0.91339
0.94070 0.92615 0.94208 0.93932 0.91659 0.94828 0.96843 0.96687
0.93150
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.42 10.70 59.85 0.64 1.06 16
2 N -0.43 -4.38 3.16 -117.71 -0.37 -4.75 16
3 C 0.25 2.91 8.51 -90.21 -0.77 2.15 16
4 Cl 0.04 0.37 28.77 -51.86 -1.49 -1.13 16
5 N -0.46 -6.29 11.26 -8.89 -0.10 -6.39 16
6 C 0.06 0.76 7.70 -17.76 -0.14 0.63 16
7 Cl 0.00 0.01 28.91 -51.86 -1.50 -1.49 16
8 C 0.04 0.41 6.47 -81.46 -0.53 -0.12 16
9 C 0.13 1.37 5.62 -4.98 -0.03 1.35 16
10 N -0.68 -8.88 5.70 -115.06 -0.66 -9.53 16
11 C 0.07 1.08 4.65 -3.83 -0.02 1.06 16
12 C -0.06 -1.08 0.60 -154.51 -0.09 -1.17 16
13 C -0.12 -2.10 8.06 37.15 0.30 -1.80 16
14 C -0.13 -2.34 7.89 37.16 0.29 -2.04 16
15 C 0.03 0.84 4.04 -27.88 -0.11 0.72 16
16 C -0.51 -13.53 7.65 -34.44 -0.26 -13.79 16
17 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16
18 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16
19 N -0.90 -26.36 13.29 55.43 0.74 -25.62 16
20 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16
21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16
22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
23 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16
24 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
25 H 0.09 0.49 7.81 -51.93 -0.41 0.08 16
26 H 0.11 0.74 7.82 -51.93 -0.41 0.33 16
27 H 0.06 0.67 7.93 -51.93 -0.41 0.26 16
28 H 0.09 0.82 7.88 -51.93 -0.41 0.41 16
29 H 0.35 4.72 6.76 -39.29 -0.27 4.45 16
30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.07 1.06 8.14 -51.92 -0.42 0.63 16
32 H 0.04 0.67 7.60 -51.93 -0.39 0.28 16
33 H 0.05 1.11 6.62 -51.93 -0.34 0.77 16
34 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16
35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
36 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16
37 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16
38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
39 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16
40 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16
LS Contribution 355.90 15.07 5.36 5.36
Total: -1.00 -30.08 355.90 -9.56 -39.65
By element:
Atomic # 1 Polarization: 3.87 SS G_CDS: -5.71 Total: -1.84 kcal
Atomic # 6 Polarization: -9.72 SS G_CDS: -0.81 Total: -10.53 kcal
Atomic # 7 Polarization: -45.90 SS G_CDS: -0.39 Total: -46.30 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal
Atomic # 17 Polarization: 0.38 SS G_CDS: -2.99 Total: -2.61 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -30.08 -9.56 -39.65 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000808429743.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.685 kcal
(2) G-P(sol) polarization free energy of solvation -30.083 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.602 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.037 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds