Wall clock time and date at job start Tue Mar 31 2020 12:49:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46508 * 1
3 3 C 1.35084 * 126.40453 * 2 1
4 4 Cl 1.73601 * 125.65455 * 359.97438 * 3 2 1
5 5 N 1.30648 * 108.69237 * 179.70787 * 3 2 1
6 6 C 1.34223 * 109.28083 * 0.44394 * 5 3 2
7 7 Cl 1.73599 * 125.98567 * 179.82436 * 6 5 3
8 8 C 1.34702 * 108.03191 * 359.55496 * 6 5 3
9 9 C 1.50701 * 126.59389 * 180.23229 * 8 6 5
10 10 N 1.46898 * 109.47026 * 270.02201 * 9 8 6
11 11 C 1.46897 * 111.00362 * 179.97438 * 10 9 8
12 12 C 1.53000 * 109.47525 * 179.97438 * 11 10 9
13 13 C 1.52993 * 109.47329 * 300.00642 * 12 11 10
14 14 C 1.53004 * 109.46530 * 60.00589 * 12 11 10
15 15 C 1.53001 * 109.47113 * 180.02562 * 12 11 10
16 16 C 1.50699 * 109.46861 * 180.02562 * 15 12 11
17 17 H 1.07995 * 120.00450 * 359.97438 * 16 15 12
18 18 C 1.37882 * 119.99553 * 180.02562 * 16 15 12
19 19 N 1.31515 * 120.00233 * 359.97438 * 18 16 15
20 20 Si 1.86800 * 119.99641 * 179.97438 * 18 16 15
21 21 H 1.48502 * 109.47242 * 89.99776 * 20 18 16
22 22 H 1.48497 * 109.46972 * 209.99694 * 20 18 16
23 23 H 1.48502 * 109.47394 * 329.99624 * 20 18 16
24 24 H 1.09000 * 109.47072 * 270.02509 * 1 2 3
25 25 H 1.08996 * 109.47042 * 30.02568 * 1 2 3
26 26 H 1.09001 * 109.46928 * 150.03187 * 1 2 3
27 27 H 1.08997 * 109.47101 * 30.02463 * 9 8 6
28 28 H 1.09000 * 109.46792 * 150.02638 * 9 8 6
29 29 H 1.00909 * 110.99838 * 56.05021 * 10 9 8
30 30 H 1.08996 * 109.47489 * 300.00863 * 11 10 9
31 31 H 1.09010 * 109.46717 * 60.00394 * 11 10 9
32 32 H 1.09002 * 109.47202 * 59.99533 * 13 12 11
33 33 H 1.08999 * 109.47313 * 179.97438 * 13 12 11
34 34 H 1.08998 * 109.46892 * 299.99924 * 13 12 11
35 35 H 1.09005 * 109.47151 * 60.00119 * 14 12 11
36 36 H 1.08999 * 109.46678 * 180.02562 * 14 12 11
37 37 H 1.09002 * 109.47039 * 299.99878 * 14 12 11
38 38 H 1.09004 * 109.46884 * 300.00303 * 15 12 11
39 39 H 1.08998 * 109.47070 * 60.00100 * 15 12 11
40 40 H 0.96998 * 119.99601 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.2668 1.0872 0.0000
4 17 1.7320 2.7388 -0.0006
5 7 3.5113 0.6897 0.0063
6 6 3.5481 -0.6520 0.0007
7 17 4.9802 -1.6331 0.0014
8 6 2.2792 -1.1039 0.0005
9 6 1.8388 -2.5451 0.0000
10 7 1.6963 -3.0131 -1.3851
11 6 1.2678 -4.4176 -1.4249
12 6 1.1300 -4.8678 -2.8807
13 6 0.0896 -3.9970 -3.5876
14 6 2.4793 -4.7262 -3.5880
15 6 0.6831 -6.3305 -2.9220
16 6 0.5480 -6.7741 -4.3559
17 1 0.7593 -6.0820 -5.1575
18 6 0.1536 -8.0635 -4.6443
19 7 -0.1043 -8.9062 -3.6682
20 14 -0.0145 -8.6132 -6.4217
21 1 1.2798 -9.1684 -6.8927
22 1 -1.0659 -9.6572 -6.5195
23 1 -0.3911 -7.4509 -7.2658
24 1 -0.3633 0.0004 1.0277
25 1 -0.3633 0.8897 -0.5142
26 1 -0.3633 -0.8903 -0.5133
27 1 2.5835 -3.1527 0.5140
28 1 0.8812 -2.6325 0.5133
29 1 2.5536 -2.8822 -1.9010
30 1 2.0087 -5.0380 -0.9209
31 1 0.3062 -4.5185 -0.9213
32 1 0.4076 -2.9548 -3.5581
33 1 -0.0082 -4.3174 -4.6248
34 1 -0.8716 -4.0979 -3.0836
35 1 3.2205 -5.3467 -3.0844
36 1 2.3811 -5.0465 -4.6253
37 1 2.7973 -3.6840 -3.5586
38 1 1.4241 -6.9512 -2.4182
39 1 -0.2782 -6.4311 -2.4181
40 1 -0.3814 -9.8133 -3.8712
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000808429743.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:49:24
Heat of formation + Delta-G solvation = 18.890760 kcal
Electronic energy + Delta-G solvation = -22382.760674 eV
Core-core repulsion = 18898.251518 eV
Total energy + Delta-G solvation = -3484.509157 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 319.091 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-43.42814 -39.19579 -38.15179 -37.67798 -36.13735 -35.13948 -34.21891 -31.20377
-28.94573 -28.04920 -27.86896 -27.24749 -25.68983 -23.83897 -22.85807 -21.47916
-19.55929 -18.57028 -18.29835 -17.42655 -16.98277 -16.59518 -16.26020 -15.71882
-15.64540 -15.51884 -14.72251 -14.55689 -14.37292 -14.14238 -13.87435 -13.71288
-13.41206 -13.35889 -13.13047 -12.78246 -12.76387 -12.68534 -12.43582 -12.38839
-12.27606 -12.21202 -12.12354 -11.88061 -11.36199 -11.32694 -10.87210 -10.81243
-10.71896 -10.47799 -9.57512 -9.32096 -8.12132 -6.18063 0.08542 0.48195
0.75284 1.41842 1.42494 1.47230 1.52555 1.93375 2.45202 3.19314
3.22335 3.46480 3.76507 3.85093 4.15530 4.25815 4.34516 4.35912
4.43094 4.50575 4.69205 4.79200 4.81870 4.86252 4.98245 5.01050
5.10614 5.23510 5.25446 5.55848 5.57354 5.58301 5.62557 5.67069
5.90190 5.95610 5.98930 6.33698 6.39285 6.41270 6.97420 7.49108
8.99959
Molecular weight = 319.09amu
Principal moments of inertia in cm(-1)
A = 0.021447 B = 0.002771 C = 0.002612
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1305.257116 B =10101.545543 C =10719.208927
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.056 3.944
2 N -0.423 5.423
3 C 0.250 3.750
4 Cl 0.062 6.938
5 N -0.490 5.490
6 C 0.041 3.959
7 Cl -0.002 7.002
8 C 0.037 3.963
9 C 0.131 3.869
10 N -0.676 5.676
11 C 0.083 3.917
12 C -0.054 4.054
13 C -0.105 4.105
14 C -0.124 4.124
15 C 0.041 3.959
16 C -0.513 4.513
17 H 0.064 0.936
18 C -0.002 4.002
19 N -0.936 5.936
20 Si 0.951 3.049
21 H -0.277 1.277
22 H -0.287 1.287
23 H -0.264 1.264
24 H 0.106 0.894
25 H 0.107 0.893
26 H 0.108 0.892
27 H 0.065 0.935
28 H 0.104 0.896
29 H 0.343 0.657
30 H 0.025 0.975
31 H 0.071 0.929
32 H 0.064 0.936
33 H 0.034 0.966
34 H 0.036 0.964
35 H 0.037 0.963
36 H 0.044 0.956
37 H 0.061 0.939
38 H -0.015 1.015
39 H -0.011 1.011
40 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.717 21.464 10.250 23.848
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 N -0.108 5.108
3 C -0.038 4.038
4 Cl 0.089 6.911
5 N -0.214 5.214
6 C -0.115 4.115
7 Cl 0.026 6.974
8 C -0.082 4.082
9 C 0.001 3.999
10 N -0.309 5.309
11 C -0.046 4.046
12 C -0.055 4.055
13 C -0.163 4.163
14 C -0.181 4.181
15 C 0.003 3.997
16 C -0.551 4.551
17 H 0.082 0.918
18 C -0.199 4.199
19 N -0.578 5.578
20 Si 0.777 3.223
21 H -0.203 1.203
22 H -0.213 1.213
23 H -0.188 1.188
24 H 0.125 0.875
25 H 0.126 0.874
26 H 0.126 0.874
27 H 0.083 0.917
28 H 0.122 0.878
29 H 0.163 0.837
30 H 0.043 0.957
31 H 0.089 0.911
32 H 0.083 0.917
33 H 0.053 0.947
34 H 0.056 0.944
35 H 0.056 0.944
36 H 0.063 0.937
37 H 0.080 0.920
38 H 0.003 0.997
39 H 0.008 0.992
40 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 1.586 22.140 10.221 24.437
hybrid contribution 0.226 -1.612 -0.556 1.721
sum 1.812 20.528 9.665 22.762
Atomic orbital electron populations
1.22625 0.72518 1.07159 1.06128 1.45244 1.09614 1.03641 1.52282
1.22939 0.85508 0.85791 1.09540 1.98433 1.88280 1.07219 1.97118
1.69756 1.18984 1.11168 1.21504 1.20510 0.88289 0.89059 1.13690
1.98371 1.36361 1.65213 1.97441 1.20826 0.88268 0.90526 1.08567
1.20396 1.02634 0.85377 0.91512 1.60605 1.38494 1.20104 1.11694
1.21854 0.99708 0.86653 0.96335 1.20488 0.95852 0.95342 0.93799
1.21484 0.97243 0.98534 0.98997 1.21696 0.95935 1.00017 1.00459
1.18994 0.94033 0.91284 0.95346 1.21629 1.43438 0.96329 0.93695
0.91835 1.25855 0.95821 0.97373 1.00852 1.70093 1.48515 1.05886
1.33303 0.85653 0.77683 0.78152 0.80817 1.20318 1.21294 1.18808
0.87532 0.87450 0.87351 0.91660 0.87766 0.83718 0.95701 0.91054
0.91676 0.94731 0.94441 0.94371 0.93670 0.91990 0.99658 0.99226
0.93217
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.56 10.70 127.77 1.37 1.93 16
2 N -0.42 -7.65 3.16 -526.32 -1.66 -9.31 16
3 C 0.25 5.30 8.51 180.21 1.53 6.83 16
4 Cl 0.06 0.97 28.77 -2.72 -0.08 0.90 16
5 N -0.49 -12.98 11.26 -182.04 -2.05 -15.03 16
6 C 0.04 1.01 7.70 83.52 0.64 1.65 16
7 Cl 0.00 -0.05 28.91 -2.72 -0.08 -0.12 16
8 C 0.04 0.78 6.47 40.91 0.26 1.04 16
9 C 0.13 2.54 5.62 85.56 0.48 3.02 16
10 N -0.68 -16.02 5.70 -517.94 -2.95 -18.97 16
11 C 0.08 2.46 4.65 86.30 0.40 2.86 16
12 C -0.05 -2.00 0.60 -52.18 -0.03 -2.03 16
13 C -0.11 -3.68 8.06 71.98 0.58 -3.10 16
14 C -0.12 -4.33 7.89 71.98 0.57 -3.76 16
15 C 0.04 2.02 4.04 29.85 0.12 2.14 16
16 C -0.51 -27.61 7.65 25.60 0.20 -27.41 16
17 H 0.06 3.31 5.68 -2.91 -0.02 3.29 16
18 C 0.00 -0.13 5.46 84.66 0.46 0.34 16
19 N -0.94 -56.09 13.29 21.45 0.28 -55.81 16
20 Si 0.95 43.83 29.54 68.60 2.03 45.85 16
21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16
22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16
23 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16
24 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16
25 H 0.11 0.79 7.81 -2.39 -0.02 0.77 16
26 H 0.11 1.14 7.82 -2.39 -0.02 1.12 16
27 H 0.07 1.28 7.93 -2.39 -0.02 1.26 16
28 H 0.10 1.68 7.88 -2.39 -0.02 1.66 16
29 H 0.34 8.55 6.76 -89.69 -0.61 7.95 16
30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16
31 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16
32 H 0.06 1.96 7.60 -2.39 -0.02 1.94 16
33 H 0.03 1.33 6.62 -2.39 -0.02 1.32 16
34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16
35 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16
36 H 0.04 1.74 6.62 -2.39 -0.02 1.73 16
37 H 0.06 1.81 6.57 -2.39 -0.02 1.79 16
38 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16
39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16
40 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16
Total: -1.00 -65.20 355.90 2.53 -62.68
By element:
Atomic # 1 Polarization: 5.85 SS G_CDS: 0.45 Total: 6.30 kcal
Atomic # 6 Polarization: -23.07 SS G_CDS: 6.59 Total: -16.48 kcal
Atomic # 7 Polarization: -92.74 SS G_CDS: -6.38 Total: -99.12 kcal
Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal
Atomic # 17 Polarization: 0.93 SS G_CDS: -0.16 Total: 0.77 kcal
Total: -65.20 2.53 -62.68 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000808429743.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.568 kcal
(2) G-P(sol) polarization free energy of solvation -65.203 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.677 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.891 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds