Wall clock time and date at job start Tue Mar 31 2020 12:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38281 * 119.92534 * 2 1 4 4 C 1.38109 * 120.06819 * 179.72544 * 3 2 1 5 5 C 1.38875 * 119.93060 * 0.25339 * 4 3 2 6 6 N 1.39921 * 120.07073 * 180.02562 * 5 4 3 7 7 C 1.46501 * 119.99966 * 173.32344 * 6 5 4 8 8 C 1.50703 * 109.46981 * 82.29393 * 7 6 5 9 9 H 1.08004 * 120.00107 * 5.08560 * 8 7 6 10 10 C 1.37880 * 120.00369 * 185.09709 * 8 7 6 11 11 N 1.31517 * 119.99461 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00373 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47302 * 89.99560 * 12 10 8 14 14 H 1.48498 * 109.47056 * 209.99671 * 12 10 8 15 15 H 1.48504 * 109.47101 * 329.99757 * 12 10 8 16 16 C 1.34782 * 120.00403 * 353.32848 * 6 5 4 17 17 O 1.21289 * 119.99427 * 5.03754 * 16 6 5 18 18 C 1.50697 * 120.00290 * 185.04231 * 16 6 5 19 19 H 1.09000 * 109.47087 * 199.16711 * 18 16 6 20 20 F 1.39903 * 109.46947 * 319.15978 * 18 16 6 21 21 C 1.52996 * 109.47434 * 79.15804 * 18 16 6 22 22 F 1.39904 * 109.46728 * 40.16325 * 21 18 16 23 23 F 1.39901 * 109.47203 * 160.15586 * 21 18 16 24 24 F 1.39893 * 109.47742 * 280.16156 * 21 18 16 25 25 C 1.38871 * 119.85586 * 0.02562 * 5 4 3 26 26 C 1.38105 * 119.93101 * 359.97438 * 25 5 4 27 27 H 1.08999 * 109.47030 * 89.99796 * 1 2 3 28 28 H 1.09002 * 109.46541 * 209.99515 * 1 2 3 29 29 H 1.08995 * 109.47296 * 329.99587 * 1 2 3 30 30 H 1.07998 * 119.96672 * 0.02562 * 3 2 1 31 31 H 1.08005 * 120.03652 * 180.28072 * 4 3 2 32 32 H 1.09000 * 109.47594 * 202.28786 * 7 6 5 33 33 H 1.08997 * 109.47522 * 322.29416 * 7 6 5 34 34 H 0.96996 * 119.99476 * 180.02562 * 11 10 8 35 35 H 1.08001 * 120.03506 * 179.97438 * 25 5 4 36 36 H 1.08001 * 119.96724 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2019 0.0057 5 6 4.2739 0.0001 0.0062 6 7 5.6731 0.0002 0.0125 7 6 6.4050 -1.2603 0.1605 8 6 6.4972 -1.9476 -1.1775 9 1 6.1280 -1.4544 -2.0646 10 6 7.0528 -3.2062 -1.2692 11 7 7.5026 -3.8066 -0.1890 12 14 7.1665 -4.0585 -2.9275 13 1 8.4576 -3.7125 -3.5744 14 1 7.0877 -5.5288 -2.7348 15 1 6.0445 -3.6116 -3.7917 16 6 6.3476 1.1598 -0.1174 17 8 5.7447 2.2118 -0.1480 18 6 7.8507 1.1493 -0.2249 19 1 8.2392 2.1386 0.0169 20 9 8.3756 0.2108 0.6702 21 6 8.2575 0.7761 -1.6518 22 9 7.4000 1.4053 -2.5607 23 9 9.5723 1.1930 -1.8860 24 9 8.1722 -0.6108 -1.8135 25 6 3.5781 -1.2017 0.0003 26 6 2.1971 -1.1983 -0.0054 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6552 2.1327 0.0004 31 1 4.1162 2.1382 0.0103 32 1 7.4085 -1.0561 0.5339 33 1 5.8794 -1.9051 0.8647 34 1 7.8938 -4.6919 -0.2536 35 1 4.1164 -2.1380 0.0002 36 1 1.6553 -2.1327 -0.0095 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815137946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:01 Heat of formation + Delta-G solvation = -178.432549 kcal Electronic energy + Delta-G solvation = -28698.899485 eV Core-core repulsion = 24069.947636 eV Total energy + Delta-G solvation = -4628.951849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.32829 -49.77166 -48.72967 -48.41497 -41.83056 -39.56112 -37.21671 -34.70935 -33.20332 -31.83118 -31.73668 -29.43903 -27.41455 -25.69203 -24.88680 -23.41575 -22.69716 -21.32200 -19.88491 -19.71436 -19.43343 -18.80554 -18.61374 -17.86048 -17.25346 -16.66440 -16.51545 -16.26437 -15.98135 -15.54802 -15.47121 -15.28851 -15.08079 -15.05365 -14.82863 -14.79258 -14.65185 -14.50651 -14.46382 -14.29403 -13.93787 -13.29257 -13.15154 -12.94699 -12.87365 -12.79711 -12.53975 -12.18234 -12.04803 -11.88864 -11.68877 -10.78185 -10.60291 -10.39775 -9.79348 -8.75473 -8.18501 -6.20297 0.15228 0.55727 0.96435 1.37200 1.39857 1.47531 1.55082 1.59587 2.36490 2.46780 2.55923 2.77686 2.96990 3.06392 3.22329 3.42271 3.77298 4.04899 4.11019 4.26946 4.44701 4.46730 4.60870 4.90020 4.92648 4.96806 5.18467 5.22141 5.26162 5.40578 5.53146 5.67077 5.67522 5.79979 5.96629 6.24420 6.27114 6.64196 6.78660 7.36702 8.87715 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.011925 B = 0.006836 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.456710 B = 4094.939427 C = 5569.151019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.115 4.115 3 C -0.108 4.108 4 C -0.183 4.183 5 C 0.122 3.878 6 N -0.518 5.518 7 C 0.181 3.819 8 C -0.504 4.504 9 H 0.048 0.952 10 C 0.031 3.969 11 N -0.914 5.914 12 Si 0.936 3.064 13 H -0.275 1.275 14 H -0.280 1.280 15 H -0.275 1.275 16 C 0.488 3.512 17 O -0.517 6.517 18 C 0.053 3.947 19 H 0.202 0.798 20 F -0.150 7.150 21 C 0.419 3.581 22 F -0.179 7.179 23 F -0.172 7.172 24 F -0.132 7.132 25 C -0.147 4.147 26 C -0.108 4.108 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.147 0.853 31 H 0.170 0.830 32 H 0.103 0.897 33 H 0.027 0.973 34 H 0.267 0.733 35 H 0.118 0.882 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 8.976 0.730 10.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 C -0.126 4.126 4 C -0.202 4.202 5 C 0.028 3.972 6 N -0.237 5.237 7 C 0.063 3.937 8 C -0.542 4.542 9 H 0.066 0.934 10 C -0.170 4.170 11 N -0.554 5.554 12 Si 0.762 3.238 13 H -0.201 1.201 14 H -0.205 1.205 15 H -0.199 1.199 16 C 0.275 3.725 17 O -0.397 6.397 18 C 0.013 3.987 19 H 0.218 0.782 20 F -0.130 7.130 21 C 0.364 3.636 22 F -0.160 7.160 23 F -0.153 7.153 24 F -0.113 7.113 25 C -0.167 4.167 26 C -0.127 4.127 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.165 0.835 31 H 0.187 0.813 32 H 0.119 0.881 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.191 9.270 0.777 10.653 hybrid contribution 0.644 -1.210 -1.025 1.711 sum -4.546 8.060 -0.248 9.257 Atomic orbital electron populations 1.20758 0.88607 1.03659 1.02927 1.20295 0.97870 0.92467 1.00957 1.21259 0.92936 0.98684 0.99711 1.22681 0.95789 0.98893 1.02844 1.18337 0.82012 0.95441 1.01383 1.46038 1.05314 1.09202 1.63105 1.20792 0.95760 0.79216 0.97948 1.21272 1.38769 1.01137 0.93059 0.93393 1.25300 0.95375 0.97327 0.98972 1.69977 1.40923 1.15454 1.29049 0.85874 0.78615 0.78085 0.81214 1.20112 1.20508 1.19942 1.20498 0.89343 0.83956 0.78706 1.90356 1.67180 1.31395 1.50720 1.23342 0.92563 0.97203 0.85635 0.78163 1.92660 1.87055 1.65594 1.67706 1.21091 0.75497 0.78290 0.88753 1.93203 1.70434 1.82560 1.69818 1.93214 1.36515 1.90284 1.95334 1.93817 1.95061 1.26466 1.95944 1.21114 0.95362 0.96767 1.03447 1.21076 0.92381 0.99013 1.00182 0.90577 0.90756 0.90305 0.83520 0.81325 0.88060 0.95509 0.92419 0.86427 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 10.01 71.24 0.71 -1.25 16 2 C -0.12 -3.25 5.88 -19.84 -0.12 -3.37 16 3 C -0.11 -3.23 9.69 22.25 0.22 -3.02 16 4 C -0.18 -6.75 9.05 22.39 0.20 -6.55 16 5 C 0.12 5.07 6.45 38.15 0.25 5.31 16 6 N -0.52 -22.13 2.70 -635.30 -1.71 -23.85 16 7 C 0.18 8.56 3.99 85.63 0.34 8.90 16 8 C -0.50 -25.57 4.88 25.60 0.13 -25.45 16 9 H 0.05 2.55 7.47 -2.91 -0.02 2.53 16 10 C 0.03 1.60 5.34 84.66 0.45 2.05 16 11 N -0.91 -49.72 13.29 21.45 0.28 -49.44 16 12 Si 0.94 42.42 29.54 68.60 2.03 44.45 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 16 C 0.49 18.70 6.11 87.66 0.54 19.23 16 17 O -0.52 -19.84 13.50 -3.06 -0.04 -19.88 16 18 C 0.05 1.70 3.65 29.85 0.11 1.81 16 19 H 0.20 4.40 8.14 -2.39 -0.02 4.38 16 20 F -0.15 -5.34 13.15 44.97 0.59 -4.75 16 21 C 0.42 14.81 3.10 71.98 0.22 15.03 16 22 F -0.18 -6.51 16.48 44.97 0.74 -5.77 16 23 F -0.17 -5.36 17.32 44.97 0.78 -4.58 16 24 F -0.13 -5.76 11.51 44.97 0.52 -5.24 16 25 C -0.15 -5.88 8.98 22.39 0.20 -5.68 16 26 C -0.11 -3.50 9.69 22.25 0.22 -3.28 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.25 8.09 -2.39 -0.02 1.23 16 29 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 30 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 31 H 0.17 6.41 4.53 -62.19 -0.28 6.12 16 32 H 0.10 4.82 3.90 -2.39 -0.01 4.81 16 33 H 0.03 1.38 6.97 -2.39 -0.02 1.36 16 34 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.12 5.27 6.09 -2.91 -0.02 5.25 16 36 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -59.35 311.48 7.53 -51.82 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.88 Total: 13.50 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 3.46 Total: 3.74 kcal Atomic # 7 Polarization: -71.86 SS G_CDS: -1.43 Total: -73.29 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.04 Total: -19.88 kcal Atomic # 9 Polarization: -22.97 SS G_CDS: 2.63 Total: -20.34 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -59.35 7.53 -51.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815137946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.613 kcal (2) G-P(sol) polarization free energy of solvation -59.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds