Wall clock time and date at job start Tue Mar 31 2020 12:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38279 * 119.92836 * 2 1 4 4 C 1.38112 * 120.07096 * 179.72447 * 3 2 1 5 5 C 1.38866 * 119.92879 * 0.25624 * 4 3 2 6 6 N 1.39924 * 120.07229 * 180.02562 * 5 4 3 7 7 C 1.46503 * 120.00456 * 174.04913 * 6 5 4 8 8 C 1.50702 * 109.46782 * 87.44080 * 7 6 5 9 9 H 1.07999 * 120.00218 * 0.02562 * 8 7 6 10 10 C 1.37871 * 119.99679 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00499 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00018 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47298 * 89.99653 * 12 10 8 14 14 H 1.48505 * 109.47182 * 210.00107 * 12 10 8 15 15 H 1.48505 * 109.46963 * 329.99518 * 12 10 8 16 16 C 1.34783 * 119.99882 * 354.05442 * 6 5 4 17 17 O 1.21287 * 119.99821 * 357.87938 * 16 6 5 18 18 C 1.50699 * 120.00151 * 177.88632 * 16 6 5 19 19 H 1.08999 * 109.47036 * 160.66461 * 18 16 6 20 20 F 1.39903 * 109.47219 * 40.66141 * 18 16 6 21 21 C 1.53002 * 109.46879 * 280.66594 * 18 16 6 22 22 F 1.39898 * 109.47342 * 100.91265 * 21 18 16 23 23 F 1.39906 * 109.46641 * 220.91238 * 21 18 16 24 24 F 1.39897 * 109.47173 * 340.91078 * 21 18 16 25 25 C 1.38869 * 119.86129 * 359.97438 * 5 4 3 26 26 C 1.38113 * 119.92816 * 0.02562 * 25 5 4 27 27 H 1.08996 * 109.47040 * 90.00230 * 1 2 3 28 28 H 1.09011 * 109.46728 * 210.00155 * 1 2 3 29 29 H 1.09000 * 109.47342 * 329.99853 * 1 2 3 30 30 H 1.08006 * 119.96557 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.03289 * 180.26890 * 4 3 2 32 32 H 1.08993 * 109.47131 * 207.44132 * 7 6 5 33 33 H 1.08994 * 109.46660 * 327.44406 * 7 6 5 34 34 H 0.97003 * 120.00681 * 180.02562 * 11 10 8 35 35 H 1.07998 * 120.03773 * 179.97438 * 25 5 4 36 36 H 1.07998 * 119.96416 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0057 5 6 4.2739 0.0001 0.0061 6 7 5.6731 0.0001 0.0125 7 6 6.4051 -1.2621 0.1445 8 6 6.6075 -1.8703 -1.2194 9 1 6.2291 -1.3668 -2.0968 10 6 7.2757 -3.0694 -1.3472 11 7 7.7369 -3.6823 -0.2789 12 14 7.5273 -3.8231 -3.0378 13 1 8.8061 -3.3338 -3.6126 14 1 7.5721 -5.3026 -2.9186 15 1 6.4035 -3.4320 -3.9263 16 6 6.3475 1.1613 -0.1027 17 8 5.7423 2.2020 -0.2505 18 6 7.8535 1.1667 -0.0480 19 1 8.2298 2.0901 -0.4884 20 9 8.3501 0.0722 -0.7641 21 6 8.3112 1.0730 1.4089 22 9 8.6967 -0.2415 1.6930 23 9 9.3967 1.9317 1.6128 24 9 7.2588 1.4431 2.2531 25 6 3.5781 -1.2017 0.0013 26 6 2.1970 -1.1984 -0.0044 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6551 2.1328 -0.0004 31 1 4.1162 2.1382 0.0101 32 1 7.3744 -1.0734 0.6057 33 1 5.8338 -1.9498 0.7678 34 1 8.2074 -4.5259 -0.3688 35 1 4.1164 -2.1380 0.0012 36 1 1.6553 -2.1327 -0.0078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815137947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:05 Heat of formation + Delta-G solvation = -181.475897 kcal Electronic energy + Delta-G solvation = -28386.320646 eV Core-core repulsion = 23757.236828 eV Total energy + Delta-G solvation = -4629.083818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.23709 -48.02299 -47.66279 -47.22107 -40.35100 -38.18865 -35.65920 -32.85096 -31.87424 -30.49432 -30.36494 -27.67179 -26.17438 -24.11631 -23.46601 -21.96434 -21.35346 -19.78765 -18.77846 -18.43276 -18.13057 -17.14882 -16.77967 -16.38523 -15.68183 -15.30694 -14.77043 -14.71850 -14.54098 -14.28973 -14.25369 -13.99703 -13.80088 -13.76943 -13.62020 -13.54680 -13.42574 -13.27126 -13.05279 -12.51122 -12.28961 -11.98523 -11.92506 -11.69284 -11.31714 -11.09959 -11.05829 -10.65607 -10.52477 -10.29581 -10.10236 -9.16424 -9.07101 -8.59289 -8.43042 -7.29393 -6.21957 -4.28357 1.54621 1.92069 2.28805 2.83375 3.06634 3.22475 3.29426 3.33375 3.59018 3.82268 4.03825 4.28346 4.32943 4.47260 4.68436 5.09823 5.15335 5.23960 5.27731 5.51379 5.57895 5.76228 5.88005 6.00087 6.06908 6.16483 6.43688 6.67033 6.78548 6.84549 7.00240 7.07517 7.17616 7.61955 7.66370 7.84302 7.90366 8.21581 8.74059 9.37108 10.85621 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.007141 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.107887 B = 3919.873063 C = 6015.812687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.169 4.169 5 C 0.156 3.844 6 N -0.511 5.511 7 C 0.203 3.797 8 C -0.529 4.529 9 H 0.062 0.938 10 C 0.071 3.929 11 N -0.886 5.886 12 Si 0.897 3.103 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.497 3.503 17 O -0.515 6.515 18 C 0.041 3.959 19 H 0.153 0.847 20 F -0.126 7.126 21 C 0.435 3.565 22 F -0.147 7.147 23 F -0.173 7.173 24 F -0.169 7.169 25 C -0.129 4.129 26 C -0.105 4.105 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.175 0.825 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.266 0.734 35 H 0.142 0.858 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.185 7.881 2.696 9.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.124 4.124 3 C -0.127 4.127 4 C -0.188 4.188 5 C 0.062 3.938 6 N -0.229 5.229 7 C 0.085 3.915 8 C -0.567 4.567 9 H 0.081 0.919 10 C -0.133 4.133 11 N -0.524 5.524 12 Si 0.725 3.275 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.198 1.198 16 C 0.283 3.717 17 O -0.395 6.395 18 C -0.001 4.001 19 H 0.171 0.829 20 F -0.106 7.106 21 C 0.380 3.620 22 F -0.128 7.128 23 F -0.155 7.155 24 F -0.150 7.150 25 C -0.149 4.149 26 C -0.123 4.123 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.191 0.809 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.160 0.840 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.281 8.161 2.712 9.606 hybrid contribution 0.486 -0.830 -0.771 1.232 sum -3.795 7.331 1.941 8.480 Atomic orbital electron populations 1.20682 0.91909 1.02002 1.01614 1.19834 0.95573 0.93488 1.03550 1.20877 0.93808 0.96940 1.01065 1.22550 0.94463 0.99776 1.01994 1.18002 0.81963 0.94525 0.99338 1.46020 1.04804 1.09378 1.62702 1.20386 0.93211 0.78350 0.99554 1.21174 1.37476 1.06216 0.91853 0.91948 1.24839 0.94879 0.96500 0.97081 1.69914 1.36965 1.17111 1.28390 0.86498 0.78840 0.78271 0.83938 1.20363 1.21029 1.19763 1.20179 0.88368 0.84316 0.78830 1.90379 1.66813 1.32508 1.49768 1.23200 0.94486 0.93662 0.88706 0.82934 1.93259 1.87892 1.52634 1.76797 1.20774 0.75939 0.75197 0.90109 1.93277 1.90871 1.34410 1.94251 1.93220 1.55913 1.70460 1.95882 1.93246 1.56770 1.91400 1.73602 1.21145 0.94049 0.97785 1.01937 1.20763 0.93388 0.97209 1.00970 0.91901 0.92083 0.92174 0.86577 0.80899 0.91480 0.93512 0.92392 0.84012 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 2 C -0.12 -1.88 5.88 -104.59 -0.62 -2.49 16 3 C -0.11 -1.74 9.69 -39.61 -0.38 -2.12 16 4 C -0.17 -3.16 9.02 -39.40 -0.36 -3.51 16 5 C 0.16 3.19 6.49 -83.70 -0.54 2.65 16 6 N -0.51 -10.85 2.68 -114.74 -0.31 -11.16 16 7 C 0.20 4.74 4.01 -5.19 -0.02 4.72 16 8 C -0.53 -13.45 7.53 -34.44 -0.26 -13.71 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -23.96 13.29 55.43 0.74 -23.22 16 12 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 16 C 0.50 9.74 5.70 -10.98 -0.06 9.68 16 17 O -0.52 -10.18 13.52 5.55 0.08 -10.11 16 18 C 0.04 0.69 3.81 -27.88 -0.11 0.58 16 19 H 0.15 1.97 8.03 -51.93 -0.42 1.55 16 20 F -0.13 -2.54 12.61 2.25 0.03 -2.51 16 21 C 0.44 7.20 3.23 37.16 0.12 7.32 16 22 F -0.15 -2.78 14.35 2.25 0.03 -2.75 16 23 F -0.17 -2.52 17.25 2.25 0.04 -2.48 16 24 F -0.17 -2.87 15.99 2.25 0.04 -2.84 16 25 C -0.13 -2.50 9.11 -39.39 -0.36 -2.86 16 26 C -0.10 -1.72 9.69 -39.61 -0.38 -2.10 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.63 8.09 -51.92 -0.42 0.21 16 29 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 31 H 0.17 3.33 4.59 -55.97 -0.26 3.08 16 32 H 0.07 1.59 3.19 -51.93 -0.17 1.42 16 33 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.14 2.94 6.21 -52.49 -0.33 2.61 16 36 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -27.83 315.37 -5.50 -33.33 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -3.16 Total: 2.47 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.71 Total: -0.94 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.43 Total: -34.39 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.11 kcal Atomic # 9 Polarization: -10.71 SS G_CDS: 0.14 Total: -10.57 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.83 -5.50 -33.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815137947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.145 kcal (2) G-P(sol) polarization free energy of solvation -27.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds