Wall clock time and date at job start Tue Mar 31 2020 12:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38279 * 119.92836 * 2 1 4 4 C 1.38112 * 120.07096 * 179.72447 * 3 2 1 5 5 C 1.38866 * 119.92879 * 0.25624 * 4 3 2 6 6 N 1.39924 * 120.07229 * 180.02562 * 5 4 3 7 7 C 1.46503 * 120.00456 * 174.04913 * 6 5 4 8 8 C 1.50702 * 109.46782 * 87.44080 * 7 6 5 9 9 H 1.07999 * 120.00218 * 0.02562 * 8 7 6 10 10 C 1.37871 * 119.99679 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00499 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00018 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47298 * 89.99653 * 12 10 8 14 14 H 1.48505 * 109.47182 * 210.00107 * 12 10 8 15 15 H 1.48505 * 109.46963 * 329.99518 * 12 10 8 16 16 C 1.34783 * 119.99882 * 354.05442 * 6 5 4 17 17 O 1.21287 * 119.99821 * 357.87938 * 16 6 5 18 18 C 1.50699 * 120.00151 * 177.88632 * 16 6 5 19 19 H 1.08999 * 109.47036 * 160.66461 * 18 16 6 20 20 F 1.39903 * 109.47219 * 40.66141 * 18 16 6 21 21 C 1.53002 * 109.46879 * 280.66594 * 18 16 6 22 22 F 1.39898 * 109.47342 * 100.91265 * 21 18 16 23 23 F 1.39906 * 109.46641 * 220.91238 * 21 18 16 24 24 F 1.39897 * 109.47173 * 340.91078 * 21 18 16 25 25 C 1.38869 * 119.86129 * 359.97438 * 5 4 3 26 26 C 1.38113 * 119.92816 * 0.02562 * 25 5 4 27 27 H 1.08996 * 109.47040 * 90.00230 * 1 2 3 28 28 H 1.09011 * 109.46728 * 210.00155 * 1 2 3 29 29 H 1.09000 * 109.47342 * 329.99853 * 1 2 3 30 30 H 1.08006 * 119.96557 * 359.97438 * 3 2 1 31 31 H 1.08000 * 120.03289 * 180.26890 * 4 3 2 32 32 H 1.08993 * 109.47131 * 207.44132 * 7 6 5 33 33 H 1.08994 * 109.46660 * 327.44406 * 7 6 5 34 34 H 0.97003 * 120.00681 * 180.02562 * 11 10 8 35 35 H 1.07998 * 120.03773 * 179.97438 * 25 5 4 36 36 H 1.07998 * 119.96416 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 0.0057 5 6 4.2739 0.0001 0.0061 6 7 5.6731 0.0001 0.0125 7 6 6.4051 -1.2621 0.1445 8 6 6.6075 -1.8703 -1.2194 9 1 6.2291 -1.3668 -2.0968 10 6 7.2757 -3.0694 -1.3472 11 7 7.7369 -3.6823 -0.2789 12 14 7.5273 -3.8231 -3.0378 13 1 8.8061 -3.3338 -3.6126 14 1 7.5721 -5.3026 -2.9186 15 1 6.4035 -3.4320 -3.9263 16 6 6.3475 1.1613 -0.1027 17 8 5.7423 2.2020 -0.2505 18 6 7.8535 1.1667 -0.0480 19 1 8.2298 2.0901 -0.4884 20 9 8.3501 0.0722 -0.7641 21 6 8.3112 1.0730 1.4089 22 9 8.6967 -0.2415 1.6930 23 9 9.3967 1.9317 1.6128 24 9 7.2588 1.4431 2.2531 25 6 3.5781 -1.2017 0.0013 26 6 2.1970 -1.1984 -0.0044 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6551 2.1328 -0.0004 31 1 4.1162 2.1382 0.0101 32 1 7.3744 -1.0734 0.6057 33 1 5.8338 -1.9498 0.7678 34 1 8.2074 -4.5259 -0.3688 35 1 4.1164 -2.1380 0.0012 36 1 1.6553 -2.1327 -0.0078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815137947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:04 Heat of formation + Delta-G solvation = -195.405896 kcal Electronic energy + Delta-G solvation = -28386.924696 eV Core-core repulsion = 23757.236828 eV Total energy + Delta-G solvation = -4629.687869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.094 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.60661 -49.47902 -48.96287 -48.68422 -41.85870 -39.57295 -37.24678 -34.73345 -33.24973 -31.84968 -31.74156 -29.46421 -27.44333 -25.61017 -25.15734 -23.40547 -22.72150 -21.23474 -20.15890 -19.83503 -19.54806 -18.71166 -18.59573 -18.01562 -17.08149 -16.73204 -16.50402 -16.20392 -16.04265 -15.70322 -15.63652 -15.35400 -15.22368 -15.16455 -15.01759 -14.93963 -14.72940 -14.55727 -14.46542 -14.29550 -13.76765 -13.44739 -13.18519 -12.96102 -12.83426 -12.79579 -12.60220 -12.26272 -12.16098 -11.94548 -11.84907 -10.81907 -10.63939 -10.50400 -9.80917 -8.77138 -8.20086 -6.32925 0.13213 0.54100 0.90313 1.36963 1.40426 1.43790 1.51692 1.60593 2.22357 2.36546 2.46500 2.64207 2.93399 3.02032 3.11023 3.41485 3.72451 4.02298 4.10253 4.24917 4.41466 4.43985 4.58769 4.85577 4.91073 4.93963 5.09241 5.17967 5.22941 5.37725 5.51542 5.64014 5.67010 5.78146 5.94678 6.21568 6.22919 6.63065 6.75962 7.34895 8.86027 Molecular weight = 319.09amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.007141 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.107887 B = 3919.873063 C = 6015.812687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.114 4.114 3 C -0.106 4.106 4 C -0.180 4.180 5 C 0.123 3.877 6 N -0.521 5.521 7 C 0.218 3.782 8 C -0.528 4.528 9 H 0.049 0.951 10 C 0.029 3.971 11 N -0.915 5.915 12 Si 0.952 3.048 13 H -0.273 1.273 14 H -0.279 1.279 15 H -0.273 1.273 16 C 0.491 3.509 17 O -0.519 6.519 18 C 0.039 3.961 19 H 0.199 0.801 20 F -0.146 7.146 21 C 0.442 3.558 22 F -0.163 7.163 23 F -0.156 7.156 24 F -0.172 7.172 25 C -0.150 4.150 26 C -0.105 4.105 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.148 0.852 31 H 0.168 0.832 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.268 0.732 35 H 0.117 0.883 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.681 8.889 2.104 10.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C -0.124 4.124 4 C -0.199 4.199 5 C 0.029 3.971 6 N -0.239 5.239 7 C 0.099 3.901 8 C -0.566 4.566 9 H 0.067 0.933 10 C -0.172 4.172 11 N -0.554 5.554 12 Si 0.778 3.222 13 H -0.199 1.199 14 H -0.205 1.205 15 H -0.198 1.198 16 C 0.277 3.723 17 O -0.399 6.399 18 C -0.001 4.001 19 H 0.216 0.784 20 F -0.126 7.126 21 C 0.387 3.613 22 F -0.145 7.145 23 F -0.138 7.138 24 F -0.153 7.153 25 C -0.171 4.171 26 C -0.123 4.123 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.166 0.834 31 H 0.184 0.816 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.135 0.865 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.789 9.188 2.120 11.065 hybrid contribution 0.832 -1.072 -0.550 1.465 sum -4.957 8.116 1.570 9.639 Atomic orbital electron populations 1.20761 0.88512 1.03695 1.02986 1.20302 0.97918 0.92425 1.00881 1.21264 0.92818 0.98783 0.99543 1.22577 0.95795 0.98712 1.02860 1.18324 0.81767 0.95604 1.01445 1.45960 1.05421 1.09042 1.63524 1.20009 0.92893 0.79062 0.98163 1.21246 1.36902 1.06273 0.92194 0.93313 1.25497 0.94773 0.96920 1.00034 1.70001 1.37834 1.17538 1.30005 0.85637 0.78662 0.77673 0.80241 1.19888 1.20465 1.19795 1.20548 0.89435 0.83832 0.78438 1.90372 1.67324 1.32261 1.49899 1.23500 0.92870 0.94662 0.89066 0.78445 1.93204 1.87943 1.54074 1.77347 1.20633 0.76195 0.74725 0.89767 1.93242 1.91028 1.35858 1.94334 1.93254 1.55018 1.69724 1.95764 1.93241 1.57050 1.91341 1.73702 1.21101 0.95498 0.96572 1.03898 1.21082 0.92226 0.99110 0.99926 0.90494 0.90690 0.90322 0.83425 0.81579 0.91598 0.95714 0.92279 0.86542 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 10.01 71.24 0.71 -1.20 16 2 C -0.11 -3.18 5.88 -19.84 -0.12 -3.30 16 3 C -0.11 -3.16 9.69 22.25 0.22 -2.94 16 4 C -0.18 -6.68 9.02 22.39 0.20 -6.48 16 5 C 0.12 5.11 6.49 38.15 0.25 5.36 16 6 N -0.52 -22.78 2.68 -635.31 -1.70 -24.48 16 7 C 0.22 10.61 4.01 85.63 0.34 10.95 16 8 C -0.53 -27.61 7.53 25.60 0.19 -27.42 16 9 H 0.05 2.64 7.81 -2.91 -0.02 2.61 16 10 C 0.03 1.51 5.46 84.65 0.46 1.97 16 11 N -0.91 -50.53 13.29 21.44 0.28 -50.24 16 12 Si 0.95 42.33 29.54 68.60 2.03 44.35 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 C 0.49 19.34 5.70 87.66 0.50 19.84 16 17 O -0.52 -20.36 13.52 -3.05 -0.04 -20.40 16 18 C 0.04 1.32 3.81 29.85 0.11 1.43 16 19 H 0.20 4.69 8.03 -2.39 -0.02 4.67 16 20 F -0.15 -5.92 12.61 44.97 0.57 -5.35 16 21 C 0.44 14.46 3.23 71.98 0.23 14.69 16 22 F -0.16 -6.28 14.35 44.97 0.65 -5.63 16 23 F -0.16 -4.31 17.25 44.97 0.78 -3.53 16 24 F -0.17 -5.84 15.99 44.97 0.72 -5.12 16 25 C -0.15 -6.00 9.11 22.39 0.20 -5.79 16 26 C -0.11 -3.34 9.69 22.25 0.22 -3.12 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.22 8.09 -2.38 -0.02 1.20 16 29 H 0.08 1.21 8.08 -2.39 -0.02 1.20 16 30 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.17 6.36 4.59 -58.07 -0.27 6.10 16 32 H 0.07 3.24 3.19 -2.39 -0.01 3.23 16 33 H 0.02 1.30 6.62 -2.39 -0.02 1.28 16 34 H 0.27 14.06 8.31 -92.71 -0.77 13.28 16 35 H 0.12 5.15 6.21 -2.91 -0.02 5.13 16 36 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -60.92 315.37 7.69 -53.23 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.90 Total: 13.19 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: 3.52 Total: 3.99 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -1.42 Total: -74.72 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.04 Total: -20.40 kcal Atomic # 9 Polarization: -22.34 SS G_CDS: 2.71 Total: -19.63 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -60.92 7.69 -53.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815137947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.176 kcal (2) G-P(sol) polarization free energy of solvation -60.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds