Wall clock time and date at job start Tue Mar 31 2020 12:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00034 * 2 1 4 4 H 1.48505 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46852 * 300.00253 * 3 2 1 6 6 H 1.48493 * 109.47204 * 60.00019 * 3 2 1 7 7 C 1.37876 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99639 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00100 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.64072 * 56.85995 * 9 7 2 11 11 C 1.55158 * 110.71824 * 180.02562 * 9 7 2 12 12 C 1.54914 * 101.61488 * 154.02318 * 11 9 7 13 13 N 1.47462 * 104.81132 * 323.04235 * 12 11 9 14 14 C 1.34781 * 125.62986 * 204.04869 * 13 12 11 15 15 O 1.21591 * 120.00230 * 174.71733 * 14 13 12 16 16 C 1.47578 * 119.99850 * 354.71767 * 14 13 12 17 17 C 1.39396 * 120.16822 * 323.91903 * 16 14 13 18 18 C 1.38480 * 120.48365 * 179.75783 * 17 16 14 19 19 F 1.35097 * 119.78607 * 180.28096 * 18 17 16 20 20 C 1.38180 * 120.42431 * 0.49454 * 18 17 16 21 21 C 1.39376 * 119.91366 * 359.76645 * 20 18 17 22 22 C 1.46852 * 134.26180 * 180.02562 * 21 20 18 23 23 C 1.33978 * 106.14931 * 179.97438 * 22 21 20 24 24 O 1.34463 * 110.12523 * 0.02562 * 23 22 21 25 25 C 1.34625 * 110.92410 * 359.97438 * 24 23 22 26 26 C 1.47025 * 108.72432 * 24.07013 * 13 12 11 27 27 H 0.97007 * 119.99621 * 359.97438 * 1 2 3 28 28 H 0.96696 * 114.00158 * 303.13798 * 10 9 7 29 29 H 1.09002 * 111.00170 * 272.11114 * 11 9 7 30 30 H 1.08996 * 111.00691 * 35.93380 * 11 9 7 31 31 H 1.09007 * 110.36742 * 81.84822 * 12 11 9 32 32 H 1.09005 * 110.36560 * 204.16716 * 12 11 9 33 33 H 1.07997 * 119.75700 * 359.97284 * 17 16 14 34 34 H 1.07994 * 120.04230 * 179.73883 * 20 18 17 35 35 H 1.07997 * 126.92683 * 359.97438 * 22 21 20 36 36 H 1.07994 * 124.93817 * 179.97438 * 23 22 21 37 37 H 1.09000 * 109.87961 * 239.56061 * 26 13 12 38 38 H 1.08993 * 110.00836 * 118.46391 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.3656 -2.5695 -1.1199 11 6 2.2334 -3.7001 -0.0005 12 6 1.3750 -4.8052 0.6641 13 7 0.5906 -4.1032 1.6968 14 6 0.0652 -4.6673 2.8024 15 8 -0.4835 -3.9737 3.6368 16 6 0.1560 -6.1270 3.0003 17 6 0.0531 -6.9894 1.9100 18 6 0.1424 -8.3599 2.0875 19 9 0.0464 -9.1825 1.0201 20 6 0.3245 -8.8916 3.3498 21 6 0.4243 -8.0453 4.4527 22 6 0.6148 -8.2573 5.8933 23 6 0.6296 -7.0389 6.4505 24 8 0.4678 -6.0961 5.5055 25 6 0.3401 -6.6537 4.2868 26 6 0.4760 -2.6865 1.3207 27 1 -0.4850 0.8401 0.0004 28 1 -0.2690 -1.8414 -1.1659 29 1 2.5097 -3.9787 -1.0175 30 1 3.1185 -3.4809 0.5966 31 1 0.7116 -5.2631 -0.0697 32 1 2.0154 -5.5598 1.1207 33 1 -0.0938 -6.5857 0.9192 34 1 0.3891 -9.9615 3.4816 35 1 0.7214 -9.2043 6.4013 36 1 0.7528 -6.8427 7.5052 37 1 0.9125 -2.0600 2.0986 38 1 -0.5716 -2.4225 1.1766 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823528083.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:53 Heat of formation + Delta-G solvation = -87.041647 kcal Electronic energy + Delta-G solvation = -26704.348919 eV Core-core repulsion = 22621.216817 eV Total energy + Delta-G solvation = -4083.132102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.03638 -42.67016 -39.68630 -37.67617 -37.04102 -34.41304 -33.05156 -32.19744 -30.70791 -29.91614 -29.55488 -27.86126 -25.60267 -24.21947 -22.77840 -22.46575 -21.74158 -19.75125 -19.30121 -18.06692 -17.69372 -17.26791 -16.78865 -16.42251 -16.29539 -15.59982 -15.55587 -15.24838 -14.81674 -14.79015 -14.20740 -13.83707 -13.41343 -13.27402 -13.10547 -12.92364 -12.86523 -12.71053 -12.18592 -12.03248 -11.74868 -11.57243 -11.39515 -11.10272 -10.84433 -10.67682 -10.50474 -10.44751 -10.19591 -9.57502 -9.38847 -8.71690 -8.69070 -8.52792 -8.35816 -7.98510 -6.32905 -4.41367 0.33680 0.94363 2.02012 2.57554 2.91142 3.18198 3.27493 3.30670 3.35311 3.53552 3.85547 4.22396 4.27007 4.38750 4.67821 4.77379 4.93477 4.95520 5.04803 5.26853 5.34494 5.37130 5.63932 5.67464 5.73334 5.79956 5.83439 5.95464 6.05054 6.13378 6.36577 6.43710 6.70170 6.78922 6.86440 6.92332 7.21615 7.31009 7.70216 7.94317 8.06311 8.53587 8.62988 9.27587 9.39486 10.75046 Molecular weight = 319.11amu Principal moments of inertia in cm(-1) A = 0.019578 B = 0.003700 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.869894 B = 7565.033436 C = 8504.810235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.586 6.586 11 C -0.118 4.118 12 C 0.096 3.904 13 N -0.601 5.601 14 C 0.561 3.439 15 O -0.532 6.532 16 C -0.073 4.073 17 C -0.099 4.099 18 C 0.081 3.919 19 F -0.133 7.133 20 C -0.092 4.092 21 C -0.114 4.114 22 C -0.215 4.215 23 C 0.020 3.980 24 O -0.173 6.173 25 C 0.090 3.910 26 C 0.101 3.899 27 H 0.271 0.729 28 H 0.387 0.613 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.212 0.788 37 H 0.069 0.931 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.673 -17.022 7.805 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.208 3.792 10 O -0.396 6.396 11 C -0.156 4.156 12 C -0.027 4.027 13 N -0.333 5.333 14 C 0.348 3.652 15 O -0.410 6.410 16 C -0.077 4.077 17 C -0.118 4.118 18 C 0.062 3.938 19 F -0.111 7.111 20 C -0.111 4.111 21 C -0.115 4.115 22 C -0.234 4.234 23 C -0.046 4.046 24 O -0.072 6.072 25 C 0.040 3.960 26 C -0.020 4.020 27 H 0.081 0.919 28 H 0.239 0.761 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.176 0.824 34 H 0.161 0.839 35 H 0.180 0.820 36 H 0.228 0.772 37 H 0.087 0.913 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.518 -16.803 8.174 18.747 hybrid contribution 0.014 1.025 0.081 1.028 sum 1.533 -15.778 8.255 17.873 Atomic orbital electron populations 1.69579 1.06043 1.27955 1.49967 1.25078 0.95055 0.99850 0.93272 0.86327 0.80057 0.82621 0.77797 1.19554 1.20695 1.20728 1.21564 0.93799 0.90051 1.52143 0.91360 1.19478 0.85845 0.92200 0.81650 1.86069 1.51406 1.53472 1.48638 1.22781 0.97708 0.94689 1.00408 1.22551 0.93994 0.96013 0.90129 1.48707 1.51415 1.12508 1.20708 1.17567 0.80067 0.86021 0.81548 1.90811 1.44568 1.63058 1.42605 1.18747 1.05738 0.94580 0.88618 1.21356 0.99600 0.91081 0.99750 1.17136 1.05537 0.87532 0.83610 1.91527 1.93906 1.71584 1.54123 1.20467 1.00692 1.00559 0.89378 1.19607 1.05463 0.92163 0.94267 1.22438 1.10641 0.99176 0.91130 1.24168 0.99792 0.86279 0.94345 1.84171 1.73526 1.35770 1.13728 1.19309 1.00887 0.90574 0.85207 1.23126 1.01936 0.77183 0.99760 0.91901 0.76112 0.90229 0.90399 0.91341 0.91646 0.82367 0.83854 0.81969 0.77183 0.91276 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.55 10.98 55.43 0.61 -22.94 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -13.83 8.11 -34.44 -0.28 -14.11 16 8 H 0.07 1.73 7.76 -52.48 -0.41 1.32 16 9 C 0.25 5.90 0.86 -89.94 -0.08 5.82 16 10 O -0.59 -14.44 13.09 -35.23 -0.46 -14.90 16 11 C -0.12 -2.29 6.22 -24.58 -0.15 -2.44 16 12 C 0.10 1.65 5.19 -2.51 -0.01 1.64 16 13 N -0.60 -12.33 3.33 -171.69 -0.57 -12.90 16 14 C 0.56 11.53 7.50 -12.45 -0.09 11.44 16 15 O -0.53 -12.84 17.10 5.29 0.09 -12.75 16 16 C -0.07 -1.21 5.43 -104.91 -0.57 -1.78 16 17 C -0.10 -1.37 8.13 -39.06 -0.32 -1.69 16 18 C 0.08 1.00 7.28 -39.51 -0.29 0.71 16 19 F -0.13 -1.60 17.26 2.25 0.04 -1.57 16 20 C -0.09 -1.01 10.06 -39.18 -0.39 -1.41 16 21 C -0.11 -1.41 6.39 -105.18 -0.67 -2.08 16 22 C -0.21 -2.03 11.15 -37.60 -0.42 -2.44 16 23 C 0.02 0.19 11.96 29.23 0.35 0.54 16 24 O -0.17 -2.63 10.44 4.39 0.05 -2.58 16 25 C 0.09 1.39 6.99 -38.02 -0.27 1.13 16 26 C 0.10 2.42 5.54 -3.06 -0.02 2.40 16 27 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.39 9.88 6.98 45.56 0.32 10.20 16 29 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.08 1.46 8.03 -51.93 -0.42 1.05 16 31 H 0.07 1.10 6.90 -51.92 -0.36 0.75 16 32 H 0.07 0.96 7.26 -51.93 -0.38 0.58 16 33 H 0.16 2.11 5.69 -52.49 -0.30 1.81 16 34 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 35 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.21 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.07 1.80 7.82 -51.93 -0.41 1.39 16 38 H 0.07 1.75 8.07 -51.93 -0.42 1.33 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -30.72 328.26 -6.82 -37.54 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -3.19 Total: 10.48 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.30 Total: -0.55 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.04 Total: -35.84 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.32 Total: -30.24 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.72 -6.82 -37.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823528083.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.500 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds